/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_2_S10_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_2_S10_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
36787094
Paired-end alignments with a unique best hit
19234846
Pairs without alignments under any condition
10787173
Pairs that did not map uniquely
6765075
Genomic sequence context not extractable (edges of chromosomes)
1896
Cytosine Methylation
Total C's analysed
820518155
Methylated C's in CpG context
60637196
Methylated C's in CHG context
2424625
Methylated C's in CHH context
11753552
Methylated C's in Unknown context
958276
Unmethylated C's in CpG context
18846821
Unmethylated C's in CHG context
205061739
Unmethylated C's in CHH context
521794222
Unmethylated C's in Unknown context
2412670
Percentage methylation (CpG context)
76.3%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4981245
original top strand
CTOT
4594462
complementary to original top strand
CTOB
4629142
complementary to original bottom strand
OB
5028101
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions