/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_3_S3_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_3_S3_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
27293279
Paired-end alignments with a unique best hit
14077908
Pairs without alignments under any condition
7639032
Pairs that did not map uniquely
5576339
Genomic sequence context not extractable (edges of chromosomes)
1641
Cytosine Methylation
Total C's analysed
562213851
Methylated C's in CpG context
42389529
Methylated C's in CHG context
1897697
Methylated C's in CHH context
10650157
Methylated C's in Unknown context
790890
Unmethylated C's in CpG context
13177716
Unmethylated C's in CHG context
143348150
Unmethylated C's in CHH context
350750602
Unmethylated C's in Unknown context
1719039
Percentage methylation (CpG context)
76.3%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3758456
original top strand
CTOT
3263750
complementary to original top strand
CTOB
3278875
complementary to original bottom strand
OB
3775186
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions