/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_2_S2_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_2_S2_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
35355537
Paired-end alignments with a unique best hit
18964065
Pairs without alignments under any condition
9596391
Pairs that did not map uniquely
6795081
Genomic sequence context not extractable (edges of chromosomes)
1968
Cytosine Methylation
Total C's analysed
770362160
Methylated C's in CpG context
56862554
Methylated C's in CHG context
2552593
Methylated C's in CHH context
14987501
Methylated C's in Unknown context
1096199
Unmethylated C's in CpG context
18225219
Unmethylated C's in CHG context
193626816
Unmethylated C's in CHH context
484107477
Unmethylated C's in Unknown context
2307573
Percentage methylation (CpG context)
75.7%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
3.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5040279
original top strand
CTOT
4389671
complementary to original top strand
CTOB
4434918
complementary to original bottom strand
OB
5097229
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions