/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_1_S1_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_1_S1_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
39102702
Paired-end alignments with a unique best hit
19406595
Pairs without alignments under any condition
12183912
Pairs that did not map uniquely
7512195
Genomic sequence context not extractable (edges of chromosomes)
2059
Cytosine Methylation
Total C's analysed
795043989
Methylated C's in CpG context
61507148
Methylated C's in CHG context
2567479
Methylated C's in CHH context
13095077
Methylated C's in Unknown context
1086181
Unmethylated C's in CpG context
18699831
Unmethylated C's in CHG context
198109732
Unmethylated C's in CHH context
501064722
Unmethylated C's in Unknown context
2607755
Percentage methylation (CpG context)
76.7%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5046317
original top strand
CTOT
4624992
complementary to original top strand
CTOB
4649906
complementary to original bottom strand
OB
5083321
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions