/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_4_S16_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_4_S16_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
34400085
Paired-end alignments with a unique best hit
16901015
Pairs without alignments under any condition
11211337
Pairs that did not map uniquely
6287733
Genomic sequence context not extractable (edges of chromosomes)
1935
Cytosine Methylation
Total C's analysed
706890716
Methylated C's in CpG context
53200529
Methylated C's in CHG context
2089496
Methylated C's in CHH context
12724965
Methylated C's in Unknown context
814187
Unmethylated C's in CpG context
15958390
Unmethylated C's in CHG context
177822938
Unmethylated C's in CHH context
445094398
Unmethylated C's in Unknown context
2179425
Percentage methylation (CpG context)
76.9%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4147379
original top strand
CTOT
4280174
complementary to original top strand
CTOB
4297075
complementary to original bottom strand
OB
4174452
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions