Summary 

Globals

Reference size 2,966,890,203
Number of reads 33,798,160
Mapped reads 33,798,160 / 100%
Unmapped reads 0 / 0%
Mapped paired reads 33,798,160 / 100%
Mapped reads, first in pair 16,899,080 / 50%
Mapped reads, second in pair 16,899,080 / 50%
Mapped reads, both in pair 33,798,160 / 100%
Mapped reads, singletons 0 / 0%
Read min/max/mean length 20 / 145 / 106.85
Duplicated reads (estimated) 8,671,464 / 25.66%
Duplication rate 21.78%
Clipped reads 0 / 0%

ACGT Content

Number/percentage of A's 1,301,858,420 / 36.29%
Number/percentage of C's 493,272,311 / 13.75%
Number/percentage of T's 1,300,669,810 / 36.25%
Number/percentage of G's 491,818,114 / 13.71%
Number/percentage of N's 23,108 / 0%
GC Percentage 27.46%

Coverage

Mean 1.2123
Standard Deviation 5.0232

Mapping Quality

Mean Mapping Quality 4.54

Insert size

Mean 124.82
Standard Deviation 59.17
P25/Median/P75 85 / 114 / 148

Mismatches and indels

General error rate 20.32%
Mismatches 706,577,340
Insertions 7,733,036
Mapped reads with at least one insertion 16.03%
Deletions 5,624,862
Mapped reads with at least one deletion 14.32%
Homopolymer indels 44.94%

Chromosome stats

Name Length Mapped bases Mean coverage Standard deviation
NC_027300.1 159038749 239614493 1.5066 3.7142
NC_027301.1 72943711 97286691 1.3337 3.3136
NC_027302.1 92503428 129993779 1.4053 3.4338
NC_027303.1 82398023 123252039 1.4958 3.5512
NC_027304.1 80503876 110802146 1.3764 3.4665
NC_027305.1 87043187 116879393 1.3428 3.5718
NC_027306.1 58785265 82927939 1.4107 3.4854
NC_027307.1 26434011 35919472 1.3588 5.0098
NC_027308.1 141712163 206388407 1.4564 4.4045
NC_027309.1 116138521 176870639 1.5229 3.6166
NC_027310.1 93888508 131777762 1.4036 3.4058
NC_027311.1 91880962 132867360 1.4461 5.4874
NC_027312.1 107758822 164861386 1.5299 3.4524
NC_027313.1 93901823 139259296 1.483 3.8295
NC_027314.1 103963436 150324290 1.4459 3.6086
NC_027315.1 87796322 126464590 1.4404 3.3868
NC_027316.1 57682537 75060117 1.3013 3.4422
NC_027317.1 70695409 102634965 1.4518 3.8569
NC_027318.1 82978132 120142223 1.4479 3.5844
NC_027319.1 86795997 129832023 1.4958 3.677
NC_027320.1 58021487 82947139 1.4296 3.5523
NC_027321.1 63420196 96216649 1.5171 3.8431
NC_027322.1 49854004 75126953 1.5069 3.3939
NC_027323.1 48650976 69186413 1.4221 3.3951
NC_027324.1 51481326 76161433 1.4794 3.8738
NC_027325.1 47900953 62097653 1.2964 3.3346
NC_027326.1 43943985 64320522 1.4637 3.7807
NC_027327.1 39600944 59133279 1.4932 3.6027
NC_027328.1 42488238 58188952 1.3695 3.3486
NW_012341867.1 84119 111154 1.3214 2.6774
NW_012341873.1 59724 45180 0.7565 2.4048
NW_012397676.1 2137 0 0 0
NW_012520740.1 1225 0 0 0
NW_012533698.1 1213 478 0.3941 0.7871
NW_012527290.1 1219 0 0 0
NW_012539745.1 1207 0 0 0
NW_012553565.1 1141 247 0.2165 0.6113
NW_012447123.1 1419 0 0 0
NW_012433467.1 1507 1963 1.3026 3.2421
NW_012355069.1 9880 3759 0.3805 1.1944
NW_012368724.1 4610 6203 1.3456 2.248
NW_012410781.1 1777 113 0.0636 0.244
NW_012461484.1 1351 0 0 0
NW_012376763.1 3776 822 0.2177 1.2326
NW_012426299.1 1570 580 0.3694 0.8253
NW_012407458.1 1845 1392 0.7545 0.9693
NW_012396957.1 2167 0 0 0
NW_012373463.1 4061 480 0.1182 0.8204
NW_012372152.1 4188 0 0 0
NW_012529413.1 1217 2311 1.8989 4.279
NW_012469258.1 1322 0 0 0
NW_012364231.1 5590 5956 1.0655 1.8285
NW_012416477.1 1684 0 0 0
NW_012355556.1 9562 1330 0.1391 0.5515
NW_012504207.1 1242 0 0 0
NW_012470149.1 1319 5132 3.8908 4.0755
NW_012370782.1 4342 848 0.1953 0.4937
NW_012560826.1 1064 1289 1.2115 2.5953
NW_012384819.1 3173 172 0.0542 0.3199
NW_012498598.1 1250 0 0 0
NW_012531527.1 1215 866 0.7128 1.3086
NW_012418030.1 1663 248 0.1491 0.5161
NW_012429582.1 1539 0 0 0
NW_012549680.1 1184 930 0.7855 1.618
NW_012445221.1 1430 514 0.3594 0.7013
NW_012570784.1 1010 292 0.2891 0.6188
NW_012352289.1 11960 28668 2.397 4.4169
NW_012373575.1 4052 206 0.0508 0.3108
NW_012433088.1 1510 0 0 0
NW_012354549.1 10252 6411 0.6253 1.2906
NW_012482321.1 1284 587 0.4572 1.0548
NW_012438876.1 1469 288 0.1961 0.397
NW_012439628.1 1464 0 0 0
NW_012519567.1 1226 288 0.2349 0.4239
NW_012395687.1 2222 0 0 0
NW_012348838.1 17480 20923 1.197 2.4975
NW_012564558.1 1038 0 0 0
NW_012496755.1 1253 0 0 0
NW_012476999.1 1298 510 0.3929 0.6374
NW_012468184.1 1326 287 0.2164 0.5768
NW_012540724.1 1206 230 0.1907 0.578
NW_012528379.1 1218 0 0 0
NW_012421097.1 1625 0 0 0
NW_012446751.1 1421 346 0.2435 0.629
NW_012482322.1 1284 0 0 0
NW_012528380.1 1218 0 0 0
NW_012396592.1 2181 0 0 0
NW_012438877.1 1469 800 0.5446 0.7994
NW_012522946.1 1223 0 0 0
NW_012519568.1 1226 514 0.4192 1.0472
NW_012380504.1 3449 854 0.2476 0.7079
NW_012390387.1 2560 376 0.1469 0.8702
NW_012407014.1 1855 0 0 0
NW_012482323.1 1284 0 0 0
NW_012363396.1 5825 0 0 0
NW_012533699.1 1213 0 0 0
NW_012507489.1 1238 258 0.2084 0.5784
NW_012481921.1 1285 273 0.2125 0.409
NW_012518473.1 1227 483 0.3936 0.8346
NW_012407983.1 1834 577 0.3146 0.6779
NW_012394924.1 2262 346 0.153 0.5182
NW_012381718.1 3352 0 0 0
NW_012361046.1 6638 190 0.0286 0.2344
NW_012442162.1 1448 286 0.1975 0.589
NW_012429583.1 1539 0 0 0
NW_012423211.1 1601 1960 1.2242 1.6102
NW_012378833.1 3595 288 0.0801 0.3893
NW_012457206.1 1369 0 0 0
NW_012492463.1 1261 1280 1.0151 2.3055
NW_012546132.1 1198 0 0 0
NW_012363797.1 5710 162 0.0284 0.2298
NW_012531528.1 1215 289 0.2379 0.5086
NW_012402924.1 1959 0 0 0
NW_012535801.1 1211 0 0 0
NW_012493984.1 1258 870 0.6916 1.2872
NW_012400629.1 2031 7503 3.6942 5.7348
NW_012511101.1 1234 0 0 0
NW_012539746.1 1207 0 0 0
NW_012535802.1 1211 338 0.2791 0.6148
NW_012548973.1 1188 0 0 0
NW_012419630.1 1643 0 0 0
NW_012508364.1 1237 0 0 0
NW_012450472.1 1401 167 0.1192 0.4618
NW_012446752.1 1421 270 0.19 0.5804
NW_012444725.1 1433 0 0 0
NW_012571081.1 1009 244 0.2418 0.6444
NW_012363300.1 5854 352 0.0601 0.337
NW_012567232.1 1024 0 0 0
NW_012409031.1 1812 258 0.1424 0.5052
NW_012387086.1 2907 1594 0.5483 1.7666
NW_012573665.1 1001 836 0.8352 2.3507
NW_012565825.1 1031 292 0.2832 0.9555
NW_012429811.1 1537 807 0.525 0.8979
NW_012349627.1 15483 8438 0.545 1.3579
NW_012420859.1 1628 599 0.3679 0.8546
NW_012452095.1 1393 0 0 0
NW_012389619.1 2630 0 0 0
NW_012386820.1 2946 0 0 0
NW_012531529.1 1215 0 0 0
NW_012347580.1 25679 16467 0.6413 2.3081
NW_012555226.1 1120 226 0.2018 0.5949
NW_012364800.1 5443 0 0 0
NW_012353190.1 11243 1106 0.0984 0.6363
NW_012505793.1 1240 0 0 0
NW_012413356.1 1731 286 0.1652 0.5259
NW_012345239.1 37994 1102 0.029 0.2086
NW_012490052.1 1266 0 0 0
NW_012549844.1 1183 234 0.1978 0.5899
NW_012424506.1 1588 1152 0.7254 1.0376
NW_012441841.1 1450 332 0.229 0.7961
NW_012491998.1 1262 0 0 0
NW_012513107.1 1232 0 0 0
NW_012451243.1 1397 0 0 0
NW_012569129.1 1016 703 0.6919 2.2901
NW_012521802.1 1224 859 0.7018 1.093
NW_012544600.1 1201 0 0 0
NW_012386013.1 3055 4131 1.3522 3.1566
NW_012409523.1 1802 292 0.162 0.487
NW_012398119.1 2120 499 0.2354 0.8303
NW_012465939.1 1334 0 0 0
NW_012385979.1 3059 928 0.3034 0.7286
NW_012475328.1 1303 129 0.099 0.4258
NW_012561850.1 1056 538 0.5095 0.8605
NW_012422041.1 1614 176 0.109 0.4472
NW_012454789.1 1380 281 0.2036 0.597
NW_012353499.1 10981 6527 0.5944 1.7542
NW_012487351.1 1272 0 0 0
NW_012510186.1 1235 244 0.1976 0.5899
NW_012544601.1 1201 0 0 0
NW_012432836.1 1512 2007 1.3274 3.6968
NW_012501956.1 1245 632 0.5076 0.7132
NW_012567426.1 1023 0 0 0
NW_012382015.1 3329 866 0.2601 0.6391
NW_012419712.1 1642 281 0.1711 0.531
NW_012497984.1 1251 0 0 0
NW_012345002.1 38580 2033 0.0527 0.3524
NW_012420276.1 1635 165 0.1009 0.428
NW_012438878.1 1469 0 0 0
NW_012353439.1 11031 12047 1.0921 2.6356
NW_012456538.1 1372 221 0.1611 0.5382
NW_012463053.1 1345 0 0 0
NW_012371260.1 4288 802 0.187 0.7495
NW_012433607.1 1506 1737 1.1534 5.0231
NW_012388595.1 2732 965 0.3532 0.8589
NW_012550238.1 1180 0 0 0
NW_012462794.1 1346 0 0 0
NW_012347837.1 22988 17647 0.7677 2.1673
NW_012541630.1 1205 288 0.239 0.641
NW_012456321.1 1373 0 0 0
NW_012504208.1 1242 578 0.4654 0.8169
NW_012518474.1 1227 0 0 0
NW_012448184.1 1413 0 0 0
NW_012527291.1 1219 287 0.2354 0.6346
NW_012421337.1 1622 0 0 0
NW_012419568.1 1644 788 0.4793 1.0146
NW_012467627.1 1328 644 0.4849 1.6136
NW_012422303.1 1611 0 0 0
NW_012548091.1 1192 774 0.6493 1.4739
NW_012362286.1 6188 1037 0.1676 0.5344
NW_012533700.1 1213 717 0.5911 1.0317
NW_012477000.1 1298 0 0 0
NW_012354729.1 10127 5464 0.5395 2.0218
NW_012353083.1 11320 11958 1.0564 2.0617
NW_012391306.1 2486 0 0 0
NW_012546552.1 1197 0 0 0
NW_012388639.1 2728 1980 0.7258 1.2281
NW_012449692.1 1405 1541 1.0968 1.4305
NW_012535803.1 1211 0 0 0
NW_012520741.1 1225 570 0.4653 0.8094
NW_012517376.1 1228 0 0 0
NW_012351084.1 13261 13548 1.0216 2.5373
NW_012346956.1 37001 0 0 0
NW_012554833.1 1125 688 0.6116 1.3433
NW_012529414.1 1217 291 0.2391 0.5827
NW_012396358.1 2191 9770 4.4592 4.0845
NW_012472625.1 1311 1983 1.5126 1.8946
NW_012425468.1 1578 0 0 0
NW_012499224.1 1249 1310 1.0488 2.3835
NW_012542491.1 1204 577 0.4792 1.1186
NW_012460997.1 1353 0 0 0
NW_012521803.1 1224 0 0 0
NW_012501957.1 1245 209 0.1679 0.548
NW_012446951.1 1420 0 0 0
NW_012388528.1 2739 0 0 0
NW_012398908.1 2091 282 0.1349 0.467
NW_012405451.1 1892 2482 1.3118 2.2027
NW_012566822.1 1026 0 0 0
NW_012416393.1 1685 290 0.1721 0.5145
NW_012408154.1 1830 0 0 0
NW_012562700.1 1050 0 0 0
NW_012345662.1 37506 1105 0.0295 0.2759
NW_012432352.1 1516 0 0 0
NW_012395553.1 2229 1372 0.6155 1.6139
NW_012557761.1 1092 165 0.1511 0.5154
NW_012408641.1 1820 0 0 0
NW_012437086.1 1481 554 0.3741 1.1464
NW_012530485.1 1216 1363 1.1209 2.0442
NW_012444064.1 1437 147 0.1023 0.4334
NW_012434172.1 1502 290 0.1931 0.435
NW_012369546.1 4494 139 0.0309 0.235
NW_012346704.1 37008 0 0 0
NW_012495075.1 1256 0 0 0
NW_012467926.1 1327 282 0.2125 0.5798
NW_012400506.1 2035 0 0 0
NW_012360473.1 6877 6009 0.8738 1.7384
NW_012565826.1 1031 0 0 0
NW_012543258.1 1203 762 0.6334 1.4728
NW_012450296.1 1402 647 0.4615 1.094
NW_012531530.1 1215 468 0.3852 0.7412
NW_012518475.1 1227 828 0.6748 0.9692
NW_012426190.1 1571 280 0.1782 0.5642
NW_012341991.1 11024 2493 0.2261 1.2834
NW_012473619.1 1308 0 0 0
NW_012461992.1 1349 0 0 0
NW_012402006.1 1987 0 0 0
NW_012491999.1 1262 264 0.2092 0.6056
NW_012470150.1 1319 0 0 0
NW_012501265.1 1246 219 0.1758 0.4862
NW_012356584.1 8898 3049 0.3427 0.9267
NW_012496756.1 1253 0 0 0
NW_012549681.1 1184 0 0 0
NW_012374279.1 3988 1175 0.2946 0.8225
NW_012464297.1 1340 170 0.1269 0.477
NW_012478487.1 1294 0 0 0
NW_012522947.1 1223 0 0 0
NW_012457445.1 1368 0 0 0
NW_012344859.1 39060 1004 0.0257 0.2894
NW_012357142.1 8560 5300 0.6192 1.4291
NW_012501958.1 1245 573 0.4602 0.4979
NW_012506648.1 1239 0 0 0
NW_012414232.1 1717 3294 1.9185 4.9788
NW_012358275.1 7907 2245 0.2839 1.0106
NW_012364885.1 5420 1220 0.2251 0.6824
NW_012411667.1 1761 5466 3.1039 3.9357
NW_012477751.1 1296 521 0.402 0.9563
NW_012455227.1 1378 8061 5.8498 5.151
NW_012493491.1 1259 0 0 0
NW_012536824.1 1210 0 0 0
NW_012358785.1 7644 739 0.0967 0.4199
NW_012477001.1 1298 2182 1.681 2.6281
NW_012425096.1 1582 0 0 0
NW_012346447.1 37041 707 0.0191 0.2237
NW_012349331.1 16160 21563 1.3343 2.7257
NW_012562812.1 1049 0 0 0
NW_012553183.1 1146 0 0 0
NW_012349648.1 15450 14609 0.9456 1.8904
NW_012348791.1 17612 24967 1.4176 4.354
NW_012444561.1 1434 2009 1.401 1.5731
NW_012353362.1 11093 6515 0.5873 1.5366
NW_012381646.1 3358 716 0.2132 0.5915
NW_012473296.1 1287 192 0.1492 0.518
NW_012505794.1 1240 786 0.6339 1.0106
NW_012504209.1 1242 0 0 0
NW_012570472.1 1011 381 0.3769 0.6843
NW_012531531.1 1215 0 0 0
NW_012463528.1 1343 0 0 0
NW_012404895.1 1906 1468 0.7702 2.0896
NW_012404931.1 1905 1364 0.716 1.1602
NW_012504966.1 1241 0 0 0
NW_012571408.1 1008 270 0.2679 0.6746
NW_012499862.1 1248 1119 0.8966 1.9204
NW_012539747.1 1207 472 0.3911 1.0013
NW_012531532.1 1215 188 0.1547 0.5266
NW_012559670.1 1074 0 0 0
NW_012520742.1 1225 0 0 0
NW_012563100.1 1047 0 0 0
NW_012395298.1 2242 126 0.0562 0.3237
NW_012466206.1 1333 251 0.1883 0.573
NW_012442503.1 1446 583 0.4032 1.0985
NW_012429049.1 1544 314 0.2034 0.5919
NW_012385696.1 3101 486 0.1567 0.7115
NW_012385722.1 3097 0 0 0
NW_012455456.1 1377 130 0.0944 0.4172
NW_012543259.1 1203 178 0.148 0.3534
NW_012471357.1 1315 0 0 0
NW_012444902.1 1432 985 0.6878 1.0909
NW_012549987.1 1182 1509 1.2766 2.3302
NW_012342741.1 31419 178 0.0057 0.1048
NW_012547586.1 1194 694 0.5812 1.1233
NW_012514188.1 1231 392 0.3184 0.7317
NW_012511102.1 1234 0 0 0
NW_012436303.1 1486 541 0.3641 0.8564
NW_012466488.1 1332 290 0.2177 0.6137
NW_012504967.1 1241 487 0.3924 0.6216
NW_012383033.1 3254 6379 1.9604 3.2601
NW_012532640.1 1214 287 0.2364 0.6374
NW_012545179.1 1200 0 0 0
NW_012372498.1 4153 3689 0.8883 1.7288
NW_012383564.1 3217 6489 2.0171 3.9749
NW_012368648.1 4621 577 0.1249 0.4474
NW_012370841.1 4335 408 0.0941 0.3618
NW_012501959.1 1245 0 0 0
NW_012527292.1 1219 0 0 0
NW_012350122.1 14581 10158 0.6967 1.4274
NW_012535804.1 1211 1967 1.6243 3.1357
NW_012353418.1 11045 14518 1.3144 4.0301
NW_012382787.1 3271 7198 2.2006 5.0903
NW_012487352.1 1272 1495 1.1753 2.0437
NW_012380931.1 3415 5686 1.665 3.0945
NW_012385802.1 3085 285 0.0924 0.2995
NW_012367987.1 4734 12570 2.6553 5.0034
NW_012492000.1 1262 0 0 0
NW_012498599.1 1250 0 0 0
NW_012560364.1 1068 266 0.2491 0.6561
NW_012359193.1 7451 21036 2.8232 11.4391
NW_012557456.1 1095 541 0.4941 0.8492
NW_012389926.1 2601 280 0.1077 0.4471
NW_012415650.1 1696 0 0 0
NW_012359842.1 7141 4008 0.5613 1.402
NW_012490053.1 1266 0 0 0
NW_012514189.1 1231 289 0.2348 0.6406
NW_012459055.1 1361 0 0 0
NW_012354173.1 10507 497 0.0473 0.2528
NW_012350273.1 14368 30822 2.1452 3.8079
NW_012488231.1 1270 0 0 0
NW_012564559.1 1038 0 0 0
NW_012447124.1 1419 0 0 0
NW_012370904.1 4329 302 0.0698 0.3576
NW_012411081.1 1771 293 0.1654 0.4995
NW_012368479.1 4650 146 0.0314 0.2425
NW_012464298.1 1340 2362 1.7627 4.5068
NW_012403764.1 1936 292 0.1508 0.3569
NW_012426091.1 1572 0 0 0
NW_012398930.1 2090 477 0.2282 0.6295
NW_012510187.1 1235 0 0 0
NW_012526229.1 1220 0 0 0
NW_012557571.1 1094 726 0.6636 1.2139
NW_012562701.1 1050 0 0 0
NW_012545180.1 1200 0 0 0
NW_012405023.1 1903 0 0 0
NW_012526230.1 1220 0 0 0
NW_012434022.1 1503 456 0.3034 0.6992
NW_012522948.1 1223 417 0.341 1.043
NW_012439318.1 1466 2043 1.3936 3.8992
NW_012501960.1 1245 0 0 0
NW_012428727.1 1547 741 0.479 1.1221
NW_012511103.1 1234 0 0 0
NW_012425202.1 1581 101 0.0639 0.3435
NW_012514190.1 1231 0 0 0
NW_012481150.1 1287 0 0 0
NW_012344023.1 43052 5760 0.1338 0.9168
NW_012349707.1 15329 14649 0.9556 2.2265
NW_012406065.1 1877 1103 0.5876 1.0249
NW_012397806.1 2132 0 0 0
NW_012415452.1 1699 0 0 0
NW_012452096.1 1393 0 0 0
NW_012475990.1 1301 0 0 0
NW_012543950.1 1202 0 0 0
NW_012406307.1 1871 0 0 0
NW_012418499.1 1657 5299 3.1979 9.1799
NW_012360946.1 6680 207 0.031 0.2443
NW_012379792.1 3510 1291 0.3678 0.9319
NW_012549496.1 1185 0 0 0
NW_012541631.1 1205 267 0.2216 0.4153
NW_012551829.1 1163 0 0 0
NW_012485145.1 1277 0 0 0
NW_012571409.1 1008 0 0 0
NW_012492979.1 1260 0 0 0
NW_012538776.1 1208 10926 9.0447 9.0338
NW_012423599.1 1597 579 0.3626 0.8363
NW_012559185.1 1078 0 0 0
NW_012452491.1 1391 1152 0.8282 2.3612
NW_012422208.1 1612 0 0 0
NW_012519569.1 1226 0 0 0
NW_012556629.1 1104 0 0 0
NW_012535805.1 1211 0 0 0
NW_012551145.1 1171 424 0.3621 0.7572
NW_012505795.1 1240 924 0.7452 1.1925
NW_012534720.1 1212 0 0 0
NW_012549497.1 1185 288 0.243 0.6203
NW_012460512.1 1355 0 0 0
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