/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_3_S15_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_3_S15_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
29194972
Paired-end alignments with a unique best hit
14679213
Pairs without alignments under any condition
9019515
Pairs that did not map uniquely
5496244
Genomic sequence context not extractable (edges of chromosomes)
2730
Cytosine Methylation
Total C's analysed
615276348
Methylated C's in CpG context
41810630
Methylated C's in CHG context
1897192
Methylated C's in CHH context
19117743
Methylated C's in Unknown context
665571
Unmethylated C's in CpG context
12339050
Unmethylated C's in CHG context
158655853
Unmethylated C's in CHH context
381455880
Unmethylated C's in Unknown context
1734905
Percentage methylation (CpG context)
77.2%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
4.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3531912
original top strand
CTOT
3795811
complementary to original top strand
CTOB
3803991
complementary to original bottom strand
OB
3544769
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions