Summary 

Globals

Reference size 2,966,890,203
Number of reads 29,352,966
Mapped reads 29,352,966 / 100%
Unmapped reads 0 / 0%
Mapped paired reads 29,352,966 / 100%
Mapped reads, first in pair 14,676,483 / 50%
Mapped reads, second in pair 14,676,483 / 50%
Mapped reads, both in pair 29,352,966 / 100%
Mapped reads, singletons 0 / 0%
Read min/max/mean length 20 / 145 / 113.26
Duplicated reads (estimated) 11,329,097 / 38.6%
Duplication rate 34.27%
Clipped reads 0 / 0%

ACGT Content

Number/percentage of A's 1,191,426,010 / 36.05%
Number/percentage of C's 462,276,963 / 13.99%
Number/percentage of T's 1,189,372,310 / 35.99%
Number/percentage of G's 461,410,899 / 13.96%
Number/percentage of N's 22,706 / 0%
GC Percentage 27.95%

Coverage

Mean 1.1168
Standard Deviation 5.3436

Mapping Quality

Mean Mapping Quality 4.54

Insert size

Mean 139.88
Standard Deviation 69.54
P25/Median/P75 93 / 127 / 164

Mismatches and indels

General error rate 19.29%
Mismatches 618,177,220
Insertions 6,608,709
Mapped reads with at least one insertion 15.91%
Deletions 5,234,894
Mapped reads with at least one deletion 15.17%
Homopolymer indels 43.33%

Chromosome stats

Name Length Mapped bases Mean coverage Standard deviation
NC_027300.1 159038749 205621859 1.2929 3.5901
NC_027301.1 72943711 87334851 1.1973 3.5189
NC_027302.1 92503428 112421423 1.2153 3.4161
NC_027303.1 82398023 104634798 1.2699 3.9068
NC_027304.1 80503876 100187897 1.2445 3.5982
NC_027305.1 87043187 105642035 1.2137 4.5733
NC_027306.1 58785265 76313748 1.2982 3.7924
NC_027307.1 26434011 31664431 1.1979 5.4838
NC_027308.1 141712163 183849909 1.2973 5.032
NC_027309.1 116138521 150633339 1.297 3.3834
NC_027310.1 93888508 113376154 1.2076 3.2721
NC_027311.1 91880962 115674085 1.259 11.2385
NC_027312.1 107758822 141461550 1.3128 3.2719
NC_027313.1 93901823 121799625 1.2971 3.6165
NC_027314.1 103963436 131618350 1.266 4.1457
NC_027315.1 87796322 108496117 1.2358 3.2684
NC_027316.1 57682537 69340602 1.2021 4.3082
NC_027317.1 70695409 91029289 1.2876 3.7095
NC_027318.1 82978132 103584491 1.2483 3.7206
NC_027319.1 86795997 113946120 1.3128 3.7413
NC_027320.1 58021487 71185360 1.2269 3.6003
NC_027321.1 63420196 82579399 1.3021 3.9381
NC_027322.1 49854004 62424484 1.2521 2.9748
NC_027323.1 48650976 59248740 1.2178 3.5306
NC_027324.1 51481326 65703642 1.2763 3.7863
NC_027325.1 47900953 55500737 1.1587 4.1187
NC_027326.1 43943985 58633077 1.3343 3.9392
NC_027327.1 39600944 51965699 1.3122 3.4958
NC_027328.1 42488238 51254959 1.2063 3.3166
NW_012341867.1 84119 122376 1.4548 3.1661
NW_012341873.1 59724 35093 0.5876 2.1725
NW_012397676.1 2137 0 0 0
NW_012520740.1 1225 0 0 0
NW_012533698.1 1213 579 0.4773 0.7324
NW_012527290.1 1219 579 0.475 0.4992
NW_012539745.1 1207 0 0 0
NW_012553565.1 1141 0 0 0
NW_012447123.1 1419 0 0 0
NW_012433467.1 1507 2480 1.6457 3.8469
NW_012355069.1 9880 2534 0.2565 1.2896
NW_012368724.1 4610 4198 0.9106 1.648
NW_012410781.1 1777 0 0 0
NW_012461484.1 1351 0 0 0
NW_012376763.1 3776 752 0.1992 0.9322
NW_012426299.1 1570 0 0 0
NW_012407458.1 1845 0 0 0
NW_012396957.1 2167 0 0 0
NW_012373463.1 4061 4571 1.1256 2.2707
NW_012372152.1 4188 0 0 0
NW_012529413.1 1217 3447 2.8324 4.9039
NW_012469258.1 1322 0 0 0
NW_012364231.1 5590 25857 4.6256 6.9303
NW_012416477.1 1684 532 0.3159 0.6067
NW_012355556.1 9562 2200 0.2301 0.9308
NW_012504207.1 1242 958 0.7713 1.472
NW_012470149.1 1319 15798 11.9773 8.0883
NW_012370782.1 4342 2442 0.5624 1.7229
NW_012560826.1 1064 1076 1.0113 1.8851
NW_012384819.1 3173 0 0 0
NW_012498598.1 1250 0 0 0
NW_012531527.1 1215 276 0.2272 0.604
NW_012418030.1 1663 0 0 0
NW_012429582.1 1539 444 0.2885 1.0221
NW_012549680.1 1184 504 0.4257 1.2197
NW_012445221.1 1430 480 0.3357 0.5843
NW_012570784.1 1010 0 0 0
NW_012352289.1 11960 21279 1.7792 3.785
NW_012373575.1 4052 1734 0.4279 1.4573
NW_012433088.1 1510 0 0 0
NW_012354549.1 10252 7815 0.7623 1.7383
NW_012482321.1 1284 578 0.4502 0.801
NW_012438876.1 1469 1156 0.7869 1.6349
NW_012439628.1 1464 0 0 0
NW_012519567.1 1226 1824 1.4878 1.655
NW_012395687.1 2222 0 0 0
NW_012348838.1 17480 10061 0.5756 1.5714
NW_012564558.1 1038 579 0.5578 0.7307
NW_012496755.1 1253 287 0.2291 0.6037
NW_012476999.1 1298 0 0 0
NW_012468184.1 1326 0 0 0
NW_012540724.1 1206 198 0.1642 0.5388
NW_012528379.1 1218 0 0 0
NW_012421097.1 1625 289 0.1778 0.3824
NW_012446751.1 1421 0 0 0
NW_012482322.1 1284 0 0 0
NW_012528380.1 1218 0 0 0
NW_012396592.1 2181 0 0 0
NW_012438877.1 1469 338 0.2301 0.9181
NW_012522946.1 1223 0 0 0
NW_012519568.1 1226 834 0.6803 1.7104
NW_012380504.1 3449 3396 0.9846 2.7107
NW_012390387.1 2560 158 0.0617 0.338
NW_012407014.1 1855 1144 0.6167 1.103
NW_012482323.1 1284 0 0 0
NW_012363396.1 5825 0 0 0
NW_012533699.1 1213 0 0 0
NW_012507489.1 1238 0 0 0
NW_012481921.1 1285 289 0.2249 0.4175
NW_012518473.1 1227 1022 0.8329 1.312
NW_012407983.1 1834 1108 0.6041 0.8844
NW_012394924.1 2262 400 0.1768 0.5574
NW_012381718.1 3352 0 0 0
NW_012361046.1 6638 248 0.0374 0.268
NW_012442162.1 1448 446 0.308 0.9863
NW_012429583.1 1539 268 0.1741 0.5581
NW_012423211.1 1601 173 0.1081 0.4439
NW_012378833.1 3595 351 0.0976 0.5802
NW_012457206.1 1369 0 0 0
NW_012492463.1 1261 2087 1.655 4.1369
NW_012546132.1 1198 278 0.2321 0.6233
NW_012363797.1 5710 470 0.0823 0.5605
NW_012531528.1 1215 0 0 0
NW_012402924.1 1959 0 0 0
NW_012535801.1 1211 289 0.2386 0.4257
NW_012493984.1 1258 484 0.3847 1.1042
NW_012400629.1 2031 6007 2.9577 3.4802
NW_012511101.1 1234 572 0.4635 0.6693
NW_012539746.1 1207 192 0.1591 0.365
NW_012535802.1 1211 462 0.3815 0.7805
NW_012548973.1 1188 0 0 0
NW_012419630.1 1643 0 0 0
NW_012508364.1 1237 0 0 0
NW_012450472.1 1401 0 0 0
NW_012446752.1 1421 278 0.1956 0.5196
NW_012444725.1 1433 0 0 0
NW_012571081.1 1009 0 0 0
NW_012363300.1 5854 288 0.0492 0.2163
NW_012567232.1 1024 0 0 0
NW_012409031.1 1812 283 0.1562 0.362
NW_012387086.1 2907 430 0.1479 0.4918
NW_012573665.1 1001 0 0 0
NW_012565825.1 1031 0 0 0
NW_012429811.1 1537 822 0.5348 1.6867
NW_012349627.1 15483 15241 0.9844 1.8578
NW_012420859.1 1628 238 0.1462 0.5147
NW_012452095.1 1393 289 0.2075 0.4029
NW_012389619.1 2630 0 0 0
NW_012386820.1 2946 0 0 0
NW_012531529.1 1215 0 0 0
NW_012347580.1 25679 15310 0.5962 2.2816
NW_012555226.1 1120 2275 2.0312 3.5572
NW_012364800.1 5443 0 0 0
NW_012353190.1 11243 0 0 0
NW_012505793.1 1240 0 0 0
NW_012413356.1 1731 98 0.0566 0.3247
NW_012345239.1 37994 663 0.0175 0.1781
NW_012490052.1 1266 291 0.2299 0.6291
NW_012549844.1 1183 532 0.4497 0.6646
NW_012424506.1 1588 2208 1.3904 2.1327
NW_012441841.1 1450 291 0.2007 0.5962
NW_012491998.1 1262 288 0.2282 0.4197
NW_012513107.1 1232 0 0 0
NW_012451243.1 1397 0 0 0
NW_012569129.1 1016 914 0.8996 2.4152
NW_012521802.1 1224 290 0.2369 0.4252
NW_012544600.1 1201 0 0 0
NW_012386013.1 3055 1856 0.6075 1.5123
NW_012409523.1 1802 993 0.5511 1.3069
NW_012398119.1 2120 0 0 0
NW_012465939.1 1334 0 0 0
NW_012385979.1 3059 1700 0.5557 1.0852
NW_012475328.1 1303 0 0 0
NW_012561850.1 1056 3594 3.4034 3.5556
NW_012422041.1 1614 287 0.1778 0.5185
NW_012454789.1 1380 0 0 0
NW_012353499.1 10981 5991 0.5456 1.3906
NW_012487351.1 1272 0 0 0
NW_012510186.1 1235 370 0.2996 0.6286
NW_012544601.1 1201 0 0 0
NW_012432836.1 1512 2131 1.4094 3.8146
NW_012501956.1 1245 874 0.702 1.1013
NW_012567426.1 1023 0 0 0
NW_012382015.1 3329 0 0 0
NW_012419712.1 1642 814 0.4957 1.0289
NW_012497984.1 1251 0 0 0
NW_012345002.1 38580 3150 0.0816 0.5481
NW_012420276.1 1635 1172 0.7168 1.6835
NW_012438878.1 1469 577 0.3928 1.1722
NW_012353439.1 11031 10140 0.9192 2.347
NW_012456538.1 1372 0 0 0
NW_012463053.1 1345 0 0 0
NW_012371260.1 4288 591 0.1378 0.5619
NW_012433607.1 1506 1015 0.674 2.9027
NW_012388595.1 2732 0 0 0
NW_012550238.1 1180 272 0.2305 0.632
NW_012462794.1 1346 0 0 0
NW_012347837.1 22988 24264 1.0555 2.3414
NW_012541630.1 1205 0 0 0
NW_012456321.1 1373 277 0.2017 0.4013
NW_012504208.1 1242 1632 1.314 1.5226
NW_012518474.1 1227 1430 1.1654 0.916
NW_012448184.1 1413 289 0.2045 0.5226
NW_012527291.1 1219 289 0.2371 0.4248
NW_012421337.1 1622 0 0 0
NW_012419568.1 1644 1963 1.194 3.0028
NW_012467627.1 1328 218 0.1642 0.5421
NW_012422303.1 1611 745 0.4624 1.0394
NW_012548091.1 1192 0 0 0
NW_012362286.1 6188 2044 0.3303 1.0342
NW_012533700.1 1213 2386 1.967 2.2184
NW_012477000.1 1298 274 0.2111 0.6042
NW_012354729.1 10127 1180 0.1165 0.6285
NW_012353083.1 11320 9669 0.8542 2.1236
NW_012391306.1 2486 290 0.1167 0.321
NW_012546552.1 1197 0 0 0
NW_012388639.1 2728 0 0 0
NW_012449692.1 1405 910 0.6477 1.1479
NW_012535803.1 1211 286 0.2362 0.6377
NW_012520741.1 1225 562 0.4588 0.8409
NW_012517376.1 1228 0 0 0
NW_012351084.1 13261 11179 0.843 2.1112
NW_012346956.1 37001 390 0.0105 0.1424
NW_012554833.1 1125 495 0.44 0.8698
NW_012529414.1 1217 273 0.2243 0.4171
NW_012396358.1 2191 18930 8.6399 7.2895
NW_012472625.1 1311 2276 1.7361 2.2878
NW_012425468.1 1578 0 0 0
NW_012499224.1 1249 0 0 0
NW_012542491.1 1204 286 0.2375 0.5119
NW_012460997.1 1353 0 0 0
NW_012521803.1 1224 0 0 0
NW_012501957.1 1245 0 0 0
NW_012446951.1 1420 0 0 0
NW_012388528.1 2739 553 0.2019 0.5039
NW_012398908.1 2091 1414 0.6762 1.3495
NW_012405451.1 1892 534 0.2822 0.6853
NW_012566822.1 1026 146 0.1423 0.5046
NW_012416393.1 1685 0 0 0
NW_012408154.1 1830 0 0 0
NW_012562700.1 1050 0 0 0
NW_012345662.1 37506 398 0.0106 0.1322
NW_012432352.1 1516 0 0 0
NW_012395553.1 2229 0 0 0
NW_012557761.1 1092 696 0.6374 1.5888
NW_012408641.1 1820 0 0 0
NW_012437086.1 1481 0 0 0
NW_012530485.1 1216 721 0.5929 1.0439
NW_012444064.1 1437 337 0.2345 0.6342
NW_012434172.1 1502 0 0 0
NW_012369546.1 4494 0 0 0
NW_012346704.1 37008 0 0 0
NW_012495075.1 1256 0 0 0
NW_012467926.1 1327 292 0.22 0.6172
NW_012400506.1 2035 0 0 0
NW_012360473.1 6877 11545 1.6788 2.966
NW_012565826.1 1031 0 0 0
NW_012543258.1 1203 289 0.2402 0.6496
NW_012450296.1 1402 293 0.209 0.4045
NW_012531530.1 1215 0 0 0
NW_012518475.1 1227 2447 1.9943 1.9748
NW_012426190.1 1571 5177 3.2954 4.9717
NW_012341991.1 11024 1629 0.1478 0.8394
NW_012473619.1 1308 0 0 0
NW_012461992.1 1349 0 0 0
NW_012402006.1 1987 246 0.1238 0.4767
NW_012491999.1 1262 0 0 0
NW_012470150.1 1319 0 0 0
NW_012501265.1 1246 1865 1.4968 2.4031
NW_012356584.1 8898 501 0.0563 0.3306
NW_012496756.1 1253 392 0.3128 1.0591
NW_012549681.1 1184 284 0.2399 0.6465
NW_012374279.1 3988 1712 0.4293 1.5326
NW_012464297.1 1340 0 0 0
NW_012478487.1 1294 0 0 0
NW_012522947.1 1223 384 0.314 1.0553
NW_012457445.1 1368 700 0.5117 1.1181
NW_012344859.1 39060 579 0.0148 0.1451
NW_012357142.1 8560 2237 0.2613 0.7
NW_012501958.1 1245 1451 1.1655 1.0952
NW_012506648.1 1239 0 0 0
NW_012414232.1 1717 1024 0.5964 1.7795
NW_012358275.1 7907 1985 0.251 0.9627
NW_012364885.1 5420 1332 0.2458 0.9096
NW_012411667.1 1761 5531 3.1408 4.3791
NW_012477751.1 1296 288 0.2222 0.6242
NW_012455227.1 1378 12765 9.2634 5.9555
NW_012493491.1 1259 0 0 0
NW_012536824.1 1210 0 0 0
NW_012358785.1 7644 577 0.0755 0.3765
NW_012477001.1 1298 1076 0.829 2.119
NW_012425096.1 1582 578 0.3654 0.6825
NW_012346447.1 37041 589 0.0159 0.2235
NW_012349331.1 16160 18215 1.1272 2.6164
NW_012562812.1 1049 0 0 0
NW_012553183.1 1146 0 0 0
NW_012349648.1 15450 6900 0.4466 1.2008
NW_012348791.1 17612 28657 1.6271 4.1805
NW_012444561.1 1434 1064 0.742 0.7999
NW_012353362.1 11093 12488 1.1258 2.9236
NW_012381646.1 3358 574 0.1709 0.4544
NW_012473296.1 1287 1281 0.9953 1.2494
NW_012505794.1 1240 3188 2.571 2.627
NW_012504209.1 1242 0 0 0
NW_012570472.1 1011 1575 1.5579 3.0663
NW_012531531.1 1215 0 0 0
NW_012463528.1 1343 0 0 0
NW_012404895.1 1906 737 0.3867 0.9804
NW_012404931.1 1905 1440 0.7559 1.4241
NW_012504966.1 1241 0 0 0
NW_012571408.1 1008 0 0 0
NW_012499862.1 1248 1895 1.5184 2.9201
NW_012539747.1 1207 1876 1.5543 2.1406
NW_012531532.1 1215 786 0.6469 0.8934
NW_012559670.1 1074 0 0 0
NW_012520742.1 1225 0 0 0
NW_012563100.1 1047 0 0 0
NW_012395298.1 2242 698 0.3113 0.912
NW_012466206.1 1333 0 0 0
NW_012442503.1 1446 1393 0.9633 2.6948
NW_012429049.1 1544 0 0 0
NW_012385696.1 3101 256 0.0826 0.3938
NW_012385722.1 3097 1929 0.6229 2.4622
NW_012455456.1 1377 206 0.1496 0.5168
NW_012543259.1 1203 285 0.2369 0.6427
NW_012471357.1 1315 0 0 0
NW_012444902.1 1432 557 0.389 0.7555
NW_012549987.1 1182 2593 2.1937 3.1916
NW_012342741.1 31419 280 0.0089 0.1193
NW_012547586.1 1194 2970 2.4874 2.663
NW_012514188.1 1231 280 0.2275 0.6233
NW_012511102.1 1234 350 0.2836 0.6405
NW_012436303.1 1486 0 0 0
NW_012466488.1 1332 0 0 0
NW_012504967.1 1241 328 0.2643 0.4676
NW_012383033.1 3254 14908 4.5814 7.9685
NW_012532640.1 1214 1581 1.3023 2.7698
NW_012545179.1 1200 289 0.2408 0.5235
NW_012372498.1 4153 5141 1.2379 2.3574
NW_012383564.1 3217 3749 1.1654 2.0156
NW_012368648.1 4621 883 0.1911 0.7354
NW_012370841.1 4335 489 0.1128 0.4365
NW_012501959.1 1245 0 0 0
NW_012527292.1 1219 902 0.74 1.5547
NW_012350122.1 14581 10027 0.6877 2.0638
NW_012535804.1 1211 2981 2.4616 2.7341
NW_012353418.1 11045 4994 0.4522 2.3238
NW_012382787.1 3271 4220 1.2901 3.2049
NW_012487352.1 1272 760 0.5975 1.9339
NW_012380931.1 3415 4020 1.1772 2.5038
NW_012385802.1 3085 868 0.2814 0.6715
NW_012367987.1 4734 11463 2.4214 5.3072
NW_012492000.1 1262 0 0 0
NW_012498599.1 1250 0 0 0
NW_012560364.1 1068 230 0.2154 0.6123
NW_012359193.1 7451 17013 2.2833 8.7112
NW_012557456.1 1095 564 0.5151 1.0579
NW_012389926.1 2601 1349 0.5186 1.0176
NW_012415650.1 1696 290 0.171 0.5507
NW_012359842.1 7141 5768 0.8077 2.0833
NW_012490053.1 1266 0 0 0
NW_012514189.1 1231 286 0.2323 0.507
NW_012459055.1 1361 0 0 0
NW_012354173.1 10507 290 0.0276 0.2194
NW_012350273.1 14368 12615 0.878 1.8991
NW_012488231.1 1270 0 0 0
NW_012564559.1 1038 0 0 0
NW_012447124.1 1419 0 0 0
NW_012370904.1 4329 575 0.1328 0.6111
NW_012411081.1 1771 0 0 0
NW_012368479.1 4650 548 0.1178 0.6212
NW_012464298.1 1340 1652 1.2328 3.5134
NW_012403764.1 1936 0 0 0
NW_012426091.1 1572 0 0 0
NW_012398930.1 2090 1962 0.9388 1.3073
NW_012510187.1 1235 289 0.234 0.5658
NW_012526229.1 1220 0 0 0
NW_012557571.1 1094 734 0.6709 1.0733
NW_012562701.1 1050 0 0 0
NW_012545180.1 1200 140 0.1167 0.3378
NW_012405023.1 1903 0 0 0
NW_012526230.1 1220 0 0 0
NW_012434022.1 1503 0 0 0
NW_012522948.1 1223 466 0.381 0.8834
NW_012439318.1 1466 385 0.2626 0.6453
NW_012501960.1 1245 166 0.1333 0.4908
NW_012428727.1 1547 834 0.5391 1.0771
NW_012511103.1 1234 0 0 0
NW_012425202.1 1581 683 0.432 1.7773
NW_012514190.1 1231 0 0 0
NW_012481150.1 1287 0 0 0
NW_012344023.1 43052 4083 0.0948 0.5737
NW_012349707.1 15329 14330 0.9348 2.9205
NW_012406065.1 1877 1678 0.894 1.1596
NW_012397806.1 2132 834 0.3912 0.7538
NW_012415452.1 1699 834 0.4909 1.2784
NW_012452096.1 1393 0 0 0
NW_012475990.1 1301 0 0 0
NW_012543950.1 1202 0 0 0
NW_012406307.1 1871 814 0.4351 0.5983
NW_012418499.1 1657 3314 2 6.5913
NW_012360946.1 6680 1151 0.1723 0.9444
NW_012379792.1 3510 2361 0.6726 1.7477
NW_012549496.1 1185 0 0 0
NW_012541631.1 1205 213 0.1768 0.3815
NW_012551829.1 1163 0 0 0
NW_012485145.1 1277 0 0 0
NW_012571409.1 1008 0 0 0
NW_012492979.1 1260 0 0 0
NW_012538776.1 1208 15109 12.5075 14.1363
NW_012423599.1 1597 224 0.1403 0.507
NW_012559185.1 1078 289 0.2681 0.5271
NW_012452491.1 1391 0 0 0
NW_012422208.1 1612 0 0 0
NW_012519569.1 1226 291 0.2374 0.5548
NW_012556629.1 1104 0 0 0
NW_012535805.1 1211 0 0 0
NW_012551145.1 1171 412 0.3518 0.7458
NW_012505795.1 1240 574 0.4629 1.1934
NW_012534720.1 1212 0 0 0
NW_012549497.1 1185 0 0 0
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