Summary 

Globals

Reference size 2,966,890,203
Number of reads 42,485,782
Mapped reads 42,485,782 / 100%
Unmapped reads 0 / 0%
Mapped paired reads 42,485,782 / 100%
Mapped reads, first in pair 21,242,891 / 50%
Mapped reads, second in pair 21,242,891 / 50%
Mapped reads, both in pair 42,485,782 / 100%
Mapped reads, singletons 0 / 0%
Read min/max/mean length 20 / 145 / 108.82
Duplicated reads (estimated) 10,949,878 / 25.77%
Duplication rate 21.24%
Clipped reads 0 / 0%

ACGT Content

Number/percentage of A's 1,673,723,878 / 36.47%
Number/percentage of C's 622,842,124 / 13.57%
Number/percentage of T's 1,672,907,613 / 36.45%
Number/percentage of G's 620,179,156 / 13.51%
Number/percentage of N's 30,839 / 0%
GC Percentage 27.08%

Coverage

Mean 1.551
Standard Deviation 7.5973

Mapping Quality

Mean Mapping Quality 4.66

Insert size

Mean 126.82
Standard Deviation 58.21
P25/Median/P75 87 / 116 / 149

Mismatches and indels

General error rate 21.04%
Mismatches 933,359,278
Insertions 11,044,602
Mapped reads with at least one insertion 18.23%
Deletions 7,423,015
Mapped reads with at least one deletion 14.96%
Homopolymer indels 45.24%

Chromosome stats

Name Length Mapped bases Mean coverage Standard deviation
NC_027300.1 159038749 309571117 1.9465 4.8755
NC_027301.1 72943711 123312820 1.6905 4.0544
NC_027302.1 92503428 166869202 1.8039 4.2848
NC_027303.1 82398023 158131283 1.9191 4.5068
NC_027304.1 80503876 141173726 1.7536 4.3931
NC_027305.1 87043187 148621312 1.7074 4.6347
NC_027306.1 58785265 105097911 1.7878 4.4638
NC_027307.1 26434011 45584869 1.7245 7.7149
NC_027308.1 141712163 263788115 1.8614 5.8755
NC_027309.1 116138521 229323344 1.9746 4.6362
NC_027310.1 93888508 170002259 1.8107 4.4067
NC_027311.1 91880962 170106613 1.8514 5.919
NC_027312.1 107758822 212218635 1.9694 4.3279
NC_027313.1 93901823 177978102 1.8954 5.6348
NC_027314.1 103963436 193505868 1.8613 4.5162
NC_027315.1 87796322 163367115 1.8608 4.2902
NC_027316.1 57682537 95144428 1.6494 4.1686
NC_027317.1 70695409 131122031 1.8547 5.3294
NC_027318.1 82978132 154607290 1.8632 4.4198
NC_027319.1 86795997 166552434 1.9189 4.7872
NC_027320.1 58021487 107189215 1.8474 4.3461
NC_027321.1 63420196 124540706 1.9637 5.1927
NC_027322.1 49854004 96950033 1.9447 4.2723
NC_027323.1 48650976 89061885 1.8306 4.1945
NC_027324.1 51481326 97891098 1.9015 5.2019
NC_027325.1 47900953 79437509 1.6584 4.0205
NC_027326.1 43943985 81276160 1.8495 5.1971
NC_027327.1 39600944 75485924 1.9062 4.5025
NC_027328.1 42488238 74623529 1.7563 4.1915
NW_012341867.1 84119 128621 1.529 3.0711
NW_012341873.1 59724 53034 0.888 3.1054
NW_012397676.1 2137 0 0 0
NW_012520740.1 1225 0 0 0
NW_012533698.1 1213 0 0 0
NW_012527290.1 1219 0 0 0
NW_012539745.1 1207 0 0 0
NW_012553565.1 1141 262 0.2296 0.6307
NW_012447123.1 1419 0 0 0
NW_012433467.1 1507 586 0.3889 0.9942
NW_012355069.1 9880 3944 0.3992 1.2277
NW_012368724.1 4610 5070 1.0998 2.4615
NW_012410781.1 1777 393 0.2212 0.8792
NW_012461484.1 1351 0 0 0
NW_012376763.1 3776 1654 0.438 2.8399
NW_012426299.1 1570 0 0 0
NW_012407458.1 1845 990 0.5366 1.2413
NW_012396957.1 2167 0 0 0
NW_012373463.1 4061 0 0 0
NW_012372152.1 4188 0 0 0
NW_012529413.1 1217 2060 1.6927 1.7982
NW_012469258.1 1322 0 0 0
NW_012364231.1 5590 8768 1.5685 2.5422
NW_012416477.1 1684 287 0.1704 0.5471
NW_012355556.1 9562 2285 0.239 0.7959
NW_012504207.1 1242 270 0.2174 0.4754
NW_012470149.1 1319 8856 6.7142 5.4444
NW_012370782.1 4342 1513 0.3485 0.9481
NW_012560826.1 1064 828 0.7782 1.5891
NW_012384819.1 3173 837 0.2638 0.6636
NW_012498598.1 1250 0 0 0
NW_012531527.1 1215 287 0.2362 0.5471
NW_012418030.1 1663 283 0.1702 0.5403
NW_012429582.1 1539 0 0 0
NW_012549680.1 1184 224 0.1892 0.578
NW_012445221.1 1430 1192 0.8336 1.0588
NW_012570784.1 1010 382 0.3782 0.7688
NW_012352289.1 11960 33328 2.7866 5.9978
NW_012373575.1 4052 838 0.2068 0.7508
NW_012433088.1 1510 0 0 0
NW_012354549.1 10252 5426 0.5293 1.1157
NW_012482321.1 1284 1156 0.9003 1.5211
NW_012438876.1 1469 288 0.1961 0.5761
NW_012439628.1 1464 293 0.2001 0.4949
NW_012519567.1 1226 124 0.1011 0.4288
NW_012395687.1 2222 0 0 0
NW_012348838.1 17480 27376 1.5661 2.9088
NW_012564558.1 1038 328 0.316 0.7188
NW_012496755.1 1253 272 0.2171 0.6157
NW_012476999.1 1298 502 0.3867 0.6275
NW_012468184.1 1326 0 0 0
NW_012540724.1 1206 414 0.3433 1.0957
NW_012528379.1 1218 0 0 0
NW_012421097.1 1625 800 0.4923 0.8917
NW_012446751.1 1421 2114 1.4877 2.3445
NW_012482322.1 1284 277 0.2157 0.4317
NW_012528380.1 1218 0 0 0
NW_012396592.1 2181 0 0 0
NW_012438877.1 1469 1488 1.0129 1.6518
NW_012522946.1 1223 0 0 0
NW_012519568.1 1226 532 0.4339 0.8154
NW_012380504.1 3449 66 0.0191 0.1871
NW_012390387.1 2560 0 0 0
NW_012407014.1 1855 288 0.1553 0.4877
NW_012482323.1 1284 454 0.3536 1.0992
NW_012363396.1 5825 0 0 0
NW_012533699.1 1213 0 0 0
NW_012507489.1 1238 0 0 0
NW_012481921.1 1285 0 0 0
NW_012518473.1 1227 289 0.2355 0.623
NW_012407983.1 1834 0 0 0
NW_012394924.1 2262 0 0 0
NW_012381718.1 3352 289 0.0862 0.4029
NW_012361046.1 6638 0 0 0
NW_012442162.1 1448 446 0.308 1.0308
NW_012429583.1 1539 0 0 0
NW_012423211.1 1601 1121 0.7002 1.3849
NW_012378833.1 3595 282 0.0784 0.5378
NW_012457206.1 1369 562 0.4105 1.2442
NW_012492463.1 1261 1795 1.4235 2.7397
NW_012546132.1 1198 0 0 0
NW_012363797.1 5710 0 0 0
NW_012531528.1 1215 574 0.4724 0.7192
NW_012402924.1 1959 0 0 0
NW_012535801.1 1211 0 0 0
NW_012493984.1 1258 156 0.124 0.474
NW_012400629.1 2031 13625 6.7085 7.2957
NW_012511101.1 1234 0 0 0
NW_012539746.1 1207 0 0 0
NW_012535802.1 1211 0 0 0
NW_012548973.1 1188 0 0 0
NW_012419630.1 1643 0 0 0
NW_012508364.1 1237 0 0 0
NW_012450472.1 1401 275 0.1963 0.4991
NW_012446752.1 1421 458 0.3223 0.6858
NW_012444725.1 1433 549 0.3831 0.6396
NW_012571081.1 1009 208 0.2061 0.8616
NW_012363300.1 5854 174 0.0297 0.2384
NW_012567232.1 1024 141 0.1377 0.3394
NW_012409031.1 1812 0 0 0
NW_012387086.1 2907 921 0.3168 1.0399
NW_012573665.1 1001 1282 1.2807 3.7446
NW_012565825.1 1031 135 0.1309 0.4858
NW_012429811.1 1537 252 0.164 0.3691
NW_012349627.1 15483 8738 0.5644 1.215
NW_012420859.1 1628 1876 1.1523 2.7488
NW_012452095.1 1393 792 0.5686 0.9554
NW_012389619.1 2630 0 0 0
NW_012386820.1 2946 534 0.1813 0.5608
NW_012531529.1 1215 577 0.4749 0.6745
NW_012347580.1 25679 28017 1.091 3.3627
NW_012555226.1 1120 444 0.3964 1.1802
NW_012364800.1 5443 0 0 0
NW_012353190.1 11243 282 0.0251 0.2102
NW_012505793.1 1240 0 0 0
NW_012413356.1 1731 689 0.398 0.8594
NW_012345239.1 37994 1303 0.0343 0.4649
NW_012490052.1 1266 965 0.7622 1.2379
NW_012549844.1 1183 0 0 0
NW_012424506.1 1588 3630 2.2859 2.5585
NW_012441841.1 1450 281 0.1938 0.3953
NW_012491998.1 1262 0 0 0
NW_012513107.1 1232 286 0.2321 0.5373
NW_012451243.1 1397 0 0 0
NW_012569129.1 1016 2527 2.4872 6.6326
NW_012521802.1 1224 0 0 0
NW_012544600.1 1201 0 0 0
NW_012386013.1 3055 5128 1.6786 3.6222
NW_012409523.1 1802 829 0.46 1.3144
NW_012398119.1 2120 0 0 0
NW_012465939.1 1334 0 0 0
NW_012385979.1 3059 0 0 0
NW_012475328.1 1303 0 0 0
NW_012561850.1 1056 570 0.5398 1.1012
NW_012422041.1 1614 0 0 0
NW_012454789.1 1380 0 0 0
NW_012353499.1 10981 8274 0.7535 1.9829
NW_012487351.1 1272 0 0 0
NW_012510186.1 1235 287 0.2324 0.531
NW_012544601.1 1201 0 0 0
NW_012432836.1 1512 3548 2.3466 6.4322
NW_012501956.1 1245 0 0 0
NW_012567426.1 1023 0 0 0
NW_012382015.1 3329 0 0 0
NW_012419712.1 1642 0 0 0
NW_012497984.1 1251 0 0 0
NW_012345002.1 38580 1419 0.0368 0.2668
NW_012420276.1 1635 0 0 0
NW_012438878.1 1469 0 0 0
NW_012353439.1 11031 13642 1.2367 3.3432
NW_012456538.1 1372 1061 0.7733 0.9699
NW_012463053.1 1345 0 0 0
NW_012371260.1 4288 2180 0.5084 1.1785
NW_012433607.1 1506 1564 1.0385 4.1805
NW_012388595.1 2732 1346 0.4927 1.3352
NW_012550238.1 1180 443 0.3754 1.0902
NW_012462794.1 1346 286 0.2125 0.6127
NW_012347837.1 22988 23860 1.0379 2.9202
NW_012541630.1 1205 0 0 0
NW_012456321.1 1373 280 0.2039 0.4029
NW_012504208.1 1242 733 0.5902 1.2436
NW_012518474.1 1227 290 0.2363 0.4243
NW_012448184.1 1413 92 0.0651 0.2467
NW_012527291.1 1219 289 0.2371 0.6153
NW_012421337.1 1622 0 0 0
NW_012419568.1 1644 2389 1.4532 3.7518
NW_012467627.1 1328 675 0.5083 1.6437
NW_012422303.1 1611 0 0 0
NW_012548091.1 1192 580 0.4866 0.7994
NW_012362286.1 6188 2568 0.415 1.3437
NW_012533700.1 1213 1926 1.5878 1.578
NW_012477000.1 1298 0 0 0
NW_012354729.1 10127 11027 1.0889 3.2331
NW_012353083.1 11320 22191 1.9603 3.528
NW_012391306.1 2486 0 0 0
NW_012546552.1 1197 205 0.1713 0.5529
NW_012388639.1 2728 1207 0.4424 0.8147
NW_012449692.1 1405 949 0.6754 1.0524
NW_012535803.1 1211 0 0 0
NW_012520741.1 1225 546 0.4457 1.2521
NW_012517376.1 1228 0 0 0
NW_012351084.1 13261 28261 2.1311 5.7682
NW_012346956.1 37001 250 0.0068 0.1149
NW_012554833.1 1125 653 0.5804 0.8934
NW_012529414.1 1217 0 0 0
NW_012396358.1 2191 13709 6.257 5.1542
NW_012472625.1 1311 287 0.2189 0.6038
NW_012425468.1 1578 156 0.0989 0.4262
NW_012499224.1 1249 822 0.6581 1.2093
NW_012542491.1 1204 817 0.6786 0.9552
NW_012460997.1 1353 190 0.1404 0.5012
NW_012521803.1 1224 0 0 0
NW_012501957.1 1245 0 0 0
NW_012446951.1 1420 0 0 0
NW_012388528.1 2739 0 0 0
NW_012398908.1 2091 893 0.4271 0.8151
NW_012405451.1 1892 3821 2.0196 2.7144
NW_012566822.1 1026 575 0.5604 1.2831
NW_012416393.1 1685 495 0.2938 0.7233
NW_012408154.1 1830 134 0.0732 0.3697
NW_012562700.1 1050 0 0 0
NW_012345662.1 37506 223 0.0059 0.0769
NW_012432352.1 1516 289 0.1906 0.5149
NW_012395553.1 2229 277 0.1243 0.4448
NW_012557761.1 1092 202 0.185 0.5715
NW_012408641.1 1820 0 0 0
NW_012437086.1 1481 270 0.1823 0.5527
NW_012530485.1 1216 466 0.3832 0.7573
NW_012444064.1 1437 1159 0.8065 1.3934
NW_012434172.1 1502 290 0.1931 0.3942
NW_012369546.1 4494 216 0.0481 0.3026
NW_012346704.1 37008 0 0 0
NW_012495075.1 1256 222 0.1768 0.3815
NW_012467926.1 1327 0 0 0
NW_012400506.1 2035 0 0 0
NW_012360473.1 6877 7340 1.0673 2.1743
NW_012565826.1 1031 0 0 0
NW_012543258.1 1203 1201 0.9983 1.3483
NW_012450296.1 1402 996 0.7104 1.01
NW_012531530.1 1215 422 0.3473 0.7769
NW_012518475.1 1227 1237 1.0081 1.4159
NW_012426190.1 1571 172 0.1095 0.4479
NW_012341991.1 11024 2535 0.23 1.087
NW_012473619.1 1308 0 0 0
NW_012461992.1 1349 0 0 0
NW_012402006.1 1987 232 0.1168 0.4635
NW_012491999.1 1262 0 0 0
NW_012470150.1 1319 0 0 0
NW_012501265.1 1246 859 0.6894 0.9131
NW_012356584.1 8898 1344 0.151 0.5822
NW_012496756.1 1253 0 0 0
NW_012549681.1 1184 0 0 0
NW_012374279.1 3988 922 0.2312 1.0399
NW_012464297.1 1340 0 0 0
NW_012478487.1 1294 0 0 0
NW_012522947.1 1223 0 0 0
NW_012457445.1 1368 974 0.712 0.9522
NW_012344859.1 39060 849 0.0217 0.2004
NW_012357142.1 8560 7948 0.9285 1.602
NW_012501958.1 1245 969 0.7783 1.0902
NW_012506648.1 1239 841 0.6788 0.6215
NW_012414232.1 1717 3068 1.7868 4.841
NW_012358275.1 7907 5475 0.6924 2.2563
NW_012364885.1 5420 0 0 0
NW_012411667.1 1761 6658 3.7808 4.5795
NW_012477751.1 1296 0 0 0
NW_012455227.1 1378 5692 4.1306 3.3203
NW_012493491.1 1259 180 0.143 0.5059
NW_012536824.1 1210 0 0 0
NW_012358785.1 7644 332 0.0434 0.3591
NW_012477001.1 1298 3961 3.0516 3.5256
NW_012425096.1 1582 866 0.5474 1.5384
NW_012346447.1 37041 832 0.0225 0.2413
NW_012349331.1 16160 22820 1.4121 3.0051
NW_012562812.1 1049 0 0 0
NW_012553183.1 1146 0 0 0
NW_012349648.1 15450 13481 0.8726 1.7176
NW_012348791.1 17612 23800 1.3514 4.2508
NW_012444561.1 1434 292 0.2036 0.4017
NW_012353362.1 11093 8723 0.7864 1.9959
NW_012381646.1 3358 1282 0.3818 0.9603
NW_012473296.1 1287 0 0 0
NW_012505794.1 1240 1555 1.254 1.797
NW_012504209.1 1242 0 0 0
NW_012570472.1 1011 2216 2.1919 3.3938
NW_012531531.1 1215 0 0 0
NW_012463528.1 1343 0 0 0
NW_012404895.1 1906 687 0.3604 1.2773
NW_012404931.1 1905 404 0.2121 0.6072
NW_012504966.1 1241 0 0 0
NW_012571408.1 1008 578 0.5734 1.0421
NW_012499862.1 1248 537 0.4303 1.0614
NW_012539747.1 1207 232 0.1922 0.5824
NW_012531532.1 1215 0 0 0
NW_012559670.1 1074 0 0 0
NW_012520742.1 1225 0 0 0
NW_012563100.1 1047 0 0 0
NW_012395298.1 2242 435 0.194 0.4929
NW_012466206.1 1333 568 0.4261 1.2218
NW_012442503.1 1446 1226 0.8479 1.7085
NW_012429049.1 1544 0 0 0
NW_012385696.1 3101 920 0.2967 0.8968
NW_012385722.1 3097 1266 0.4088 1.1844
NW_012455456.1 1377 558 0.4052 0.7875
NW_012543259.1 1203 1406 1.1687 1.7444
NW_012471357.1 1315 334 0.254 0.4344
NW_012444902.1 1432 929 0.6487 1.248
NW_012549987.1 1182 145 0.1227 0.4694
NW_012342741.1 31419 696 0.0222 0.2178
NW_012547586.1 1194 986 0.8258 1.0911
NW_012514188.1 1231 0 0 0
NW_012511102.1 1234 0 0 0
NW_012436303.1 1486 0 0 0
NW_012466488.1 1332 581 0.4362 1.1581
NW_012504967.1 1241 0 0 0
NW_012383033.1 3254 7422 2.2809 4.0077
NW_012532640.1 1214 0 0 0
NW_012545179.1 1200 0 0 0
NW_012372498.1 4153 3622 0.8721 1.8115
NW_012383564.1 3217 10321 3.2083 6.4424
NW_012368648.1 4621 1155 0.2499 0.7981
NW_012370841.1 4335 1815 0.4187 1.0538
NW_012501959.1 1245 0 0 0
NW_012527292.1 1219 1081 0.8868 1.3903
NW_012350122.1 14581 9294 0.6374 1.9832
NW_012535804.1 1211 1479 1.2213 2.3247
NW_012353418.1 11045 13540 1.2259 5.0205
NW_012382787.1 3271 9465 2.8936 8.0929
NW_012487352.1 1272 3702 2.9104 4.6895
NW_012380931.1 3415 6443 1.8867 3.9635
NW_012385802.1 3085 1213 0.3932 0.8195
NW_012367987.1 4734 26317 5.5591 11.3161
NW_012492000.1 1262 0 0 0
NW_012498599.1 1250 290 0.232 0.6156
NW_012560364.1 1068 730 0.6835 1.3661
NW_012359193.1 7451 45479 6.1037 18.1179
NW_012557456.1 1095 391 0.3571 0.6778
NW_012389926.1 2601 190 0.073 0.37
NW_012415650.1 1696 0 0 0
NW_012359842.1 7141 3778 0.5291 1.5669
NW_012490053.1 1266 0 0 0
NW_012514189.1 1231 672 0.5459 1.2017
NW_012459055.1 1361 280 0.2057 0.4042
NW_012354173.1 10507 1792 0.1706 0.8736
NW_012350273.1 14368 38643 2.6895 5.3962
NW_012488231.1 1270 0 0 0
NW_012564559.1 1038 0 0 0
NW_012447124.1 1419 0 0 0
NW_012370904.1 4329 1195 0.276 0.7813
NW_012411081.1 1771 866 0.489 1.4718
NW_012368479.1 4650 280 0.0602 0.3374
NW_012464298.1 1340 3851 2.8739 7.3776
NW_012403764.1 1936 0 0 0
NW_012426091.1 1572 0 0 0
NW_012398930.1 2090 0 0 0
NW_012510187.1 1235 290 0.2348 0.6208
NW_012526229.1 1220 0 0 0
NW_012557571.1 1094 995 0.9095 1.6886
NW_012562701.1 1050 0 0 0
NW_012545180.1 1200 573 0.4775 1.2157
NW_012405023.1 1903 0 0 0
NW_012526230.1 1220 0 0 0
NW_012434022.1 1503 169 0.1124 0.4542
NW_012522948.1 1223 278 0.2273 0.6112
NW_012439318.1 1466 1706 1.1637 3.5104
NW_012501960.1 1245 1358 1.0908 1.4843
NW_012428727.1 1547 0 0 0
NW_012511103.1 1234 0 0 0
NW_012425202.1 1581 502 0.3175 0.8027
NW_012514190.1 1231 290 0.2356 0.588
NW_012481150.1 1287 0 0 0
NW_012344023.1 43052 6708 0.1558 1.1598
NW_012349707.1 15329 16029 1.0457 2.2726
NW_012406065.1 1877 3095 1.6489 3.1694
NW_012397806.1 2132 116 0.0544 0.3181
NW_012415452.1 1699 1371 0.8069 1.3593
NW_012452096.1 1393 0 0 0
NW_012475990.1 1301 188 0.1445 0.5103
NW_012543950.1 1202 124 0.1032 0.302
NW_012406307.1 1871 0 0 0
NW_012418499.1 1657 4274 2.5794 7.318
NW_012360946.1 6680 579 0.0867 0.4205
NW_012379792.1 3510 419 0.1194 0.8257
NW_012549496.1 1185 0 0 0
NW_012541631.1 1205 162 0.1344 0.4941
NW_012551829.1 1163 0 0 0
NW_012485145.1 1277 270 0.2114 0.5242
NW_012571409.1 1008 282 0.2798 0.4726
NW_012492979.1 1260 0 0 0
NW_012538776.1 1208 7887 6.529 7.7965
NW_012423599.1 1597 138 0.0864 0.3989
NW_012559185.1 1078 116 0.1076 0.4409
NW_012452491.1 1391 1960 1.4091 2.4565
NW_012422208.1 1612 0 0 0
NW_012519569.1 1226 0 0 0
NW_012556629.1 1104 0 0 0
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