Qualimap report: BAM QC

Summary

Globals

Reference size	2,966,890,203
Number of reads	42,485,782
Mapped reads	42,485,782 / 100%
Unmapped reads	0 / 0%
Mapped paired reads	42,485,782 / 100%
Mapped reads, first in pair	21,242,891 / 50%
Mapped reads, second in pair	21,242,891 / 50%
Mapped reads, both in pair	42,485,782 / 100%
Mapped reads, singletons	0 / 0%
Read min/max/mean length	20 / 145 / 108.82
Duplicated reads (estimated)	10,949,878 / 25.77%
Duplication rate	21.24%
Clipped reads	0 / 0%

ACGT Content

Number/percentage of A's	1,673,723,878 / 36.47%
Number/percentage of C's	622,842,124 / 13.57%
Number/percentage of T's	1,672,907,613 / 36.45%
Number/percentage of G's	620,179,156 / 13.51%
Number/percentage of N's	30,839 / 0%
GC Percentage	27.08%

Coverage

Mean	1.551
Standard Deviation	7.5973

Mapping Quality

Mean Mapping Quality

4.66

Insert size

Mean	126.82
Standard Deviation	58.21
P25/Median/P75	87 / 116 / 149

Mismatches and indels

General error rate	21.04%
Mismatches	933,359,278
Insertions	11,044,602
Mapped reads with at least one insertion	18.23%
Deletions	7,423,015
Mapped reads with at least one deletion	14.96%
Homopolymer indels	45.24%

Chromosome stats

Name	Length	Mapped bases	Mean coverage	Standard deviation
NC_027300.1	159038749	309571117	1.9465	4.8755
NC_027301.1	72943711	123312820	1.6905	4.0544
NC_027302.1	92503428	166869202	1.8039	4.2848
NC_027303.1	82398023	158131283	1.9191	4.5068
NC_027304.1	80503876	141173726	1.7536	4.3931
NC_027305.1	87043187	148621312	1.7074	4.6347
NC_027306.1	58785265	105097911	1.7878	4.4638
NC_027307.1	26434011	45584869	1.7245	7.7149
NC_027308.1	141712163	263788115	1.8614	5.8755
NC_027309.1	116138521	229323344	1.9746	4.6362
NC_027310.1	93888508	170002259	1.8107	4.4067
NC_027311.1	91880962	170106613	1.8514	5.919
NC_027312.1	107758822	212218635	1.9694	4.3279
NC_027313.1	93901823	177978102	1.8954	5.6348
NC_027314.1	103963436	193505868	1.8613	4.5162
NC_027315.1	87796322	163367115	1.8608	4.2902
NC_027316.1	57682537	95144428	1.6494	4.1686
NC_027317.1	70695409	131122031	1.8547	5.3294
NC_027318.1	82978132	154607290	1.8632	4.4198
NC_027319.1	86795997	166552434	1.9189	4.7872
NC_027320.1	58021487	107189215	1.8474	4.3461
NC_027321.1	63420196	124540706	1.9637	5.1927
NC_027322.1	49854004	96950033	1.9447	4.2723
NC_027323.1	48650976	89061885	1.8306	4.1945
NC_027324.1	51481326	97891098	1.9015	5.2019
NC_027325.1	47900953	79437509	1.6584	4.0205
NC_027326.1	43943985	81276160	1.8495	5.1971
NC_027327.1	39600944	75485924	1.9062	4.5025
NC_027328.1	42488238	74623529	1.7563	4.1915
NW_012341867.1	84119	128621	1.529	3.0711
NW_012341873.1	59724	53034	0.888	3.1054
NW_012397676.1	2137	0	0	0
NW_012520740.1	1225	0	0	0
NW_012533698.1	1213	0	0	0
NW_012527290.1	1219	0	0	0
NW_012539745.1	1207	0	0	0
NW_012553565.1	1141	262	0.2296	0.6307
NW_012447123.1	1419	0	0	0
NW_012433467.1	1507	586	0.3889	0.9942
NW_012355069.1	9880	3944	0.3992	1.2277
NW_012368724.1	4610	5070	1.0998	2.4615
NW_012410781.1	1777	393	0.2212	0.8792
NW_012461484.1	1351	0	0	0
NW_012376763.1	3776	1654	0.438	2.8399
NW_012426299.1	1570	0	0	0
NW_012407458.1	1845	990	0.5366	1.2413
NW_012396957.1	2167	0	0	0
NW_012373463.1	4061	0	0	0
NW_012372152.1	4188	0	0	0
NW_012529413.1	1217	2060	1.6927	1.7982
NW_012469258.1	1322	0	0	0
NW_012364231.1	5590	8768	1.5685	2.5422
NW_012416477.1	1684	287	0.1704	0.5471
NW_012355556.1	9562	2285	0.239	0.7959
NW_012504207.1	1242	270	0.2174	0.4754
NW_012470149.1	1319	8856	6.7142	5.4444
NW_012370782.1	4342	1513	0.3485	0.9481
NW_012560826.1	1064	828	0.7782	1.5891
NW_012384819.1	3173	837	0.2638	0.6636
NW_012498598.1	1250	0	0	0
NW_012531527.1	1215	287	0.2362	0.5471
NW_012418030.1	1663	283	0.1702	0.5403
NW_012429582.1	1539	0	0	0
NW_012549680.1	1184	224	0.1892	0.578
NW_012445221.1	1430	1192	0.8336	1.0588
NW_012570784.1	1010	382	0.3782	0.7688
NW_012352289.1	11960	33328	2.7866	5.9978
NW_012373575.1	4052	838	0.2068	0.7508
NW_012433088.1	1510	0	0	0
NW_012354549.1	10252	5426	0.5293	1.1157
NW_012482321.1	1284	1156	0.9003	1.5211
NW_012438876.1	1469	288	0.1961	0.5761
NW_012439628.1	1464	293	0.2001	0.4949
NW_012519567.1	1226	124	0.1011	0.4288
NW_012395687.1	2222	0	0	0
NW_012348838.1	17480	27376	1.5661	2.9088
NW_012564558.1	1038	328	0.316	0.7188
NW_012496755.1	1253	272	0.2171	0.6157
NW_012476999.1	1298	502	0.3867	0.6275
NW_012468184.1	1326	0	0	0
NW_012540724.1	1206	414	0.3433	1.0957
NW_012528379.1	1218	0	0	0
NW_012421097.1	1625	800	0.4923	0.8917
NW_012446751.1	1421	2114	1.4877	2.3445
NW_012482322.1	1284	277	0.2157	0.4317
NW_012528380.1	1218	0	0	0
NW_012396592.1	2181	0	0	0
NW_012438877.1	1469	1488	1.0129	1.6518
NW_012522946.1	1223	0	0	0
NW_012519568.1	1226	532	0.4339	0.8154
NW_012380504.1	3449	66	0.0191	0.1871
NW_012390387.1	2560	0	0	0
NW_012407014.1	1855	288	0.1553	0.4877
NW_012482323.1	1284	454	0.3536	1.0992
NW_012363396.1	5825	0	0	0
NW_012533699.1	1213	0	0	0
NW_012507489.1	1238	0	0	0
NW_012481921.1	1285	0	0	0
NW_012518473.1	1227	289	0.2355	0.623
NW_012407983.1	1834	0	0	0
NW_012394924.1	2262	0	0	0
NW_012381718.1	3352	289	0.0862	0.4029
NW_012361046.1	6638	0	0	0
NW_012442162.1	1448	446	0.308	1.0308
NW_012429583.1	1539	0	0	0
NW_012423211.1	1601	1121	0.7002	1.3849
NW_012378833.1	3595	282	0.0784	0.5378
NW_012457206.1	1369	562	0.4105	1.2442
NW_012492463.1	1261	1795	1.4235	2.7397
NW_012546132.1	1198	0	0	0
NW_012363797.1	5710	0	0	0
NW_012531528.1	1215	574	0.4724	0.7192
NW_012402924.1	1959	0	0	0
NW_012535801.1	1211	0	0	0
NW_012493984.1	1258	156	0.124	0.474
NW_012400629.1	2031	13625	6.7085	7.2957
NW_012511101.1	1234	0	0	0
NW_012539746.1	1207	0	0	0
NW_012535802.1	1211	0	0	0
NW_012548973.1	1188	0	0	0
NW_012419630.1	1643	0	0	0
NW_012508364.1	1237	0	0	0
NW_012450472.1	1401	275	0.1963	0.4991
NW_012446752.1	1421	458	0.3223	0.6858
NW_012444725.1	1433	549	0.3831	0.6396
NW_012571081.1	1009	208	0.2061	0.8616
NW_012363300.1	5854	174	0.0297	0.2384
NW_012567232.1	1024	141	0.1377	0.3394
NW_012409031.1	1812	0	0	0
NW_012387086.1	2907	921	0.3168	1.0399
NW_012573665.1	1001	1282	1.2807	3.7446
NW_012565825.1	1031	135	0.1309	0.4858
NW_012429811.1	1537	252	0.164	0.3691
NW_012349627.1	15483	8738	0.5644	1.215
NW_012420859.1	1628	1876	1.1523	2.7488
NW_012452095.1	1393	792	0.5686	0.9554
NW_012389619.1	2630	0	0	0
NW_012386820.1	2946	534	0.1813	0.5608
NW_012531529.1	1215	577	0.4749	0.6745
NW_012347580.1	25679	28017	1.091	3.3627
NW_012555226.1	1120	444	0.3964	1.1802
NW_012364800.1	5443	0	0	0
NW_012353190.1	11243	282	0.0251	0.2102
NW_012505793.1	1240	0	0	0
NW_012413356.1	1731	689	0.398	0.8594
NW_012345239.1	37994	1303	0.0343	0.4649
NW_012490052.1	1266	965	0.7622	1.2379
NW_012549844.1	1183	0	0	0
NW_012424506.1	1588	3630	2.2859	2.5585
NW_012441841.1	1450	281	0.1938	0.3953
NW_012491998.1	1262	0	0	0
NW_012513107.1	1232	286	0.2321	0.5373
NW_012451243.1	1397	0	0	0
NW_012569129.1	1016	2527	2.4872	6.6326
NW_012521802.1	1224	0	0	0
NW_012544600.1	1201	0	0	0
NW_012386013.1	3055	5128	1.6786	3.6222
NW_012409523.1	1802	829	0.46	1.3144
NW_012398119.1	2120	0	0	0
NW_012465939.1	1334	0	0	0
NW_012385979.1	3059	0	0	0
NW_012475328.1	1303	0	0	0
NW_012561850.1	1056	570	0.5398	1.1012
NW_012422041.1	1614	0	0	0
NW_012454789.1	1380	0	0	0
NW_012353499.1	10981	8274	0.7535	1.9829
NW_012487351.1	1272	0	0	0
NW_012510186.1	1235	287	0.2324	0.531
NW_012544601.1	1201	0	0	0
NW_012432836.1	1512	3548	2.3466	6.4322
NW_012501956.1	1245	0	0	0
NW_012567426.1	1023	0	0	0
NW_012382015.1	3329	0	0	0
NW_012419712.1	1642	0	0	0
NW_012497984.1	1251	0	0	0
NW_012345002.1	38580	1419	0.0368	0.2668
NW_012420276.1	1635	0	0	0
NW_012438878.1	1469	0	0	0
NW_012353439.1	11031	13642	1.2367	3.3432
NW_012456538.1	1372	1061	0.7733	0.9699
NW_012463053.1	1345	0	0	0
NW_012371260.1	4288	2180	0.5084	1.1785
NW_012433607.1	1506	1564	1.0385	4.1805
NW_012388595.1	2732	1346	0.4927	1.3352
NW_012550238.1	1180	443	0.3754	1.0902
NW_012462794.1	1346	286	0.2125	0.6127
NW_012347837.1	22988	23860	1.0379	2.9202
NW_012541630.1	1205	0	0	0
NW_012456321.1	1373	280	0.2039	0.4029
NW_012504208.1	1242	733	0.5902	1.2436
NW_012518474.1	1227	290	0.2363	0.4243
NW_012448184.1	1413	92	0.0651	0.2467
NW_012527291.1	1219	289	0.2371	0.6153
NW_012421337.1	1622	0	0	0
NW_012419568.1	1644	2389	1.4532	3.7518
NW_012467627.1	1328	675	0.5083	1.6437
NW_012422303.1	1611	0	0	0
NW_012548091.1	1192	580	0.4866	0.7994
NW_012362286.1	6188	2568	0.415	1.3437
NW_012533700.1	1213	1926	1.5878	1.578
NW_012477000.1	1298	0	0	0
NW_012354729.1	10127	11027	1.0889	3.2331
NW_012353083.1	11320	22191	1.9603	3.528
NW_012391306.1	2486	0	0	0
NW_012546552.1	1197	205	0.1713	0.5529
NW_012388639.1	2728	1207	0.4424	0.8147
NW_012449692.1	1405	949	0.6754	1.0524
NW_012535803.1	1211	0	0	0
NW_012520741.1	1225	546	0.4457	1.2521
NW_012517376.1	1228	0	0	0
NW_012351084.1	13261	28261	2.1311	5.7682
NW_012346956.1	37001	250	0.0068	0.1149
NW_012554833.1	1125	653	0.5804	0.8934
NW_012529414.1	1217	0	0	0
NW_012396358.1	2191	13709	6.257	5.1542
NW_012472625.1	1311	287	0.2189	0.6038
NW_012425468.1	1578	156	0.0989	0.4262
NW_012499224.1	1249	822	0.6581	1.2093
NW_012542491.1	1204	817	0.6786	0.9552
NW_012460997.1	1353	190	0.1404	0.5012
NW_012521803.1	1224	0	0	0
NW_012501957.1	1245	0	0	0
NW_012446951.1	1420	0	0	0
NW_012388528.1	2739	0	0	0
NW_012398908.1	2091	893	0.4271	0.8151
NW_012405451.1	1892	3821	2.0196	2.7144
NW_012566822.1	1026	575	0.5604	1.2831
NW_012416393.1	1685	495	0.2938	0.7233
NW_012408154.1	1830	134	0.0732	0.3697
NW_012562700.1	1050	0	0	0
NW_012345662.1	37506	223	0.0059	0.0769
NW_012432352.1	1516	289	0.1906	0.5149
NW_012395553.1	2229	277	0.1243	0.4448
NW_012557761.1	1092	202	0.185	0.5715
NW_012408641.1	1820	0	0	0
NW_012437086.1	1481	270	0.1823	0.5527
NW_012530485.1	1216	466	0.3832	0.7573
NW_012444064.1	1437	1159	0.8065	1.3934
NW_012434172.1	1502	290	0.1931	0.3942
NW_012369546.1	4494	216	0.0481	0.3026
NW_012346704.1	37008	0	0	0
NW_012495075.1	1256	222	0.1768	0.3815
NW_012467926.1	1327	0	0	0
NW_012400506.1	2035	0	0	0
NW_012360473.1	6877	7340	1.0673	2.1743
NW_012565826.1	1031	0	0	0
NW_012543258.1	1203	1201	0.9983	1.3483
NW_012450296.1	1402	996	0.7104	1.01
NW_012531530.1	1215	422	0.3473	0.7769
NW_012518475.1	1227	1237	1.0081	1.4159
NW_012426190.1	1571	172	0.1095	0.4479
NW_012341991.1	11024	2535	0.23	1.087
NW_012473619.1	1308	0	0	0
NW_012461992.1	1349	0	0	0
NW_012402006.1	1987	232	0.1168	0.4635
NW_012491999.1	1262	0	0	0
NW_012470150.1	1319	0	0	0
NW_012501265.1	1246	859	0.6894	0.9131
NW_012356584.1	8898	1344	0.151	0.5822
NW_012496756.1	1253	0	0	0
NW_012549681.1	1184	0	0	0
NW_012374279.1	3988	922	0.2312	1.0399
NW_012464297.1	1340	0	0	0
NW_012478487.1	1294	0	0	0
NW_012522947.1	1223	0	0	0
NW_012457445.1	1368	974	0.712	0.9522
NW_012344859.1	39060	849	0.0217	0.2004
NW_012357142.1	8560	7948	0.9285	1.602
NW_012501958.1	1245	969	0.7783	1.0902
NW_012506648.1	1239	841	0.6788	0.6215
NW_012414232.1	1717	3068	1.7868	4.841
NW_012358275.1	7907	5475	0.6924	2.2563
NW_012364885.1	5420	0	0	0
NW_012411667.1	1761	6658	3.7808	4.5795
NW_012477751.1	1296	0	0	0
NW_012455227.1	1378	5692	4.1306	3.3203
NW_012493491.1	1259	180	0.143	0.5059
NW_012536824.1	1210	0	0	0
NW_012358785.1	7644	332	0.0434	0.3591
NW_012477001.1	1298	3961	3.0516	3.5256
NW_012425096.1	1582	866	0.5474	1.5384
NW_012346447.1	37041	832	0.0225	0.2413
NW_012349331.1	16160	22820	1.4121	3.0051
NW_012562812.1	1049	0	0	0
NW_012553183.1	1146	0	0	0
NW_012349648.1	15450	13481	0.8726	1.7176
NW_012348791.1	17612	23800	1.3514	4.2508
NW_012444561.1	1434	292	0.2036	0.4017
NW_012353362.1	11093	8723	0.7864	1.9959
NW_012381646.1	3358	1282	0.3818	0.9603
NW_012473296.1	1287	0	0	0
NW_012505794.1	1240	1555	1.254	1.797
NW_012504209.1	1242	0	0	0
NW_012570472.1	1011	2216	2.1919	3.3938
NW_012531531.1	1215	0	0	0
NW_012463528.1	1343	0	0	0
NW_012404895.1	1906	687	0.3604	1.2773
NW_012404931.1	1905	404	0.2121	0.6072
NW_012504966.1	1241	0	0	0
NW_012571408.1	1008	578	0.5734	1.0421
NW_012499862.1	1248	537	0.4303	1.0614
NW_012539747.1	1207	232	0.1922	0.5824
NW_012531532.1	1215	0	0	0
NW_012559670.1	1074	0	0	0
NW_012520742.1	1225	0	0	0
NW_012563100.1	1047	0	0	0
NW_012395298.1	2242	435	0.194	0.4929
NW_012466206.1	1333	568	0.4261	1.2218
NW_012442503.1	1446	1226	0.8479	1.7085
NW_012429049.1	1544	0	0	0
NW_012385696.1	3101	920	0.2967	0.8968
NW_012385722.1	3097	1266	0.4088	1.1844
NW_012455456.1	1377	558	0.4052	0.7875
NW_012543259.1	1203	1406	1.1687	1.7444
NW_012471357.1	1315	334	0.254	0.4344
NW_012444902.1	1432	929	0.6487	1.248
NW_012549987.1	1182	145	0.1227	0.4694
NW_012342741.1	31419	696	0.0222	0.2178
NW_012547586.1	1194	986	0.8258	1.0911
NW_012514188.1	1231	0	0	0
NW_012511102.1	1234	0	0	0
NW_012436303.1	1486	0	0	0
NW_012466488.1	1332	581	0.4362	1.1581
NW_012504967.1	1241	0	0	0
NW_012383033.1	3254	7422	2.2809	4.0077
NW_012532640.1	1214	0	0	0
NW_012545179.1	1200	0	0	0
NW_012372498.1	4153	3622	0.8721	1.8115
NW_012383564.1	3217	10321	3.2083	6.4424
NW_012368648.1	4621	1155	0.2499	0.7981
NW_012370841.1	4335	1815	0.4187	1.0538
NW_012501959.1	1245	0	0	0
NW_012527292.1	1219	1081	0.8868	1.3903
NW_012350122.1	14581	9294	0.6374	1.9832
NW_012535804.1	1211	1479	1.2213	2.3247
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NW_012396245.1	2198	0	0	0
NW_012389544.1	2639	4496	1.7037	3.1638
NW_012490507.1	1266	289	0.2283	0.5082
NW_012539744.1	1208	2280	1.8874	3.0362
NW_012370553.1	4370	4526	1.0357	3.7381
NW_012390292.1	2569	292	0.1137	0.3565
NW_012564557.1	1039	0	0	0
NW_012358396.1	7847	4545	0.5792	1.9341
NW_012481918.1	1286	0	0	0
NW_012470463.1	1319	0	0	0
NW_012498596.1	1251	1060	0.8473	1.7392
NW_012409522.1	1803	282	0.1564	0.5223
NW_012468729.1	1325	289	0.2181	0.5943
NW_012556720.1	1104	0	0	0
NW_012476998.1	1299	0	0	0
NW_012416392.1	1686	270	0.1601	0.5336
NW_012552540.1	1155	224	0.1939	0.5821
NW_012519561.1	1227	843	0.687	1.0806
NW_012519562.1	1227	773	0.63	0.9643
NW_012481919.1	1286	0	0	0
NW_012436165.1	1488	276	0.1855	0.3887
NW_012524081.1	1223	0	0	0
NW_012522945.1	1224	0	0	0
NW_012541629.1	1206	0	0	0
NW_012384211.1	3183	0	0	0
NW_012362619.1	6071	985	0.1622	0.5914
NW_012513106.1	1233	219	0.1776	0.5639
NW_012382985.1	3258	392	0.1203	0.4167
NW_012368960.1	4574	839	0.1834	0.5528
NW_012561572.1	1059	0	0	0
NW_012354718.1	10134	6475	0.6389	1.641
NW_012525121.1	1222	0	0	0
NW_012542490.1	1205	246	0.2041	0.5964
NW_012493982.1	1259	770	0.6116	0.8007
NW_012482730.1	1284	0	0	0
NW_012369979.1	4439	4582	1.0322	2.4002
NW_012367410.1	4841	0	0	0
NW_012491004.1	1265	282	0.2229	0.609
NW_012403544.1	1943	1955	1.0062	2.0896
NW_012462793.1	1347	219	0.1626	0.5386
NW_012529410.1	1218	242	0.1987	0.5927
NW_012559183.1	1079	0	0	0
NW_012443886.1	1439	0	0	0
NW_012372922.1	4113	370	0.09	0.3847
NW_012474286.1	1307	0	0	0
NW_012504205.1	1243	1138	0.9155	1.6915
NW_012469533.1	1322	287	0.2171	0.5989
NW_012390897.1	2519	0	0	0
NW_012454152.1	1384	0	0	0
NW_012352240.1	11996	15029	1.2528	2.0913
NW_012448561.1	1412	0	0	0
NW_012534718.1	1213	0	0	0
NW_012363155.1	5900	0	0	0
NW_012574387.1	1000	0	0	0
NW_012510182.1	1236	839	0.6788	1.6329
NW_012534719.1	1213	249	0.2053	0.6008
NW_012352071.1	12140	9716	0.8003	1.7494
NW_012422207.1	1613	0	0	0
NW_012342093.1	7761	9755	1.2569	2.2274
NW_012519563.1	1227	222	0.1809	0.5642
NW_012360442.1	6890	6798	0.9866	1.5323
NW_012432569.1	1515	262	0.1729	0.5562
NW_012526226.1	1221	0	0	0
NW_012566434.1	1029	0	0	0
NW_012478486.1	1295	5952	4.5961	12.8362
NW_012423403.1	1600	0	0	0
NW_012429581.1	1540	3280	2.1299	3.1599
NW_012556721.1	1104	3436	3.1123	2.4684
NW_012418101.1	1663	621	0.3734	1.0837
NW_012471355.1	1316	744	0.5653	0.8184
NW_012358885.1	7598	205	0.027	0.2273
NW_012396246.1	2198	508	0.2311	0.5812
NW_012450295.1	1403	644	0.459	1.0936
NW_012448955.1	1410	270	0.1915	0.5836
NW_012420033.1	1639	302	0.1843	0.7983
NW_012368723.1	4611	291	0.0631	0.3374
NW_012519564.1	1227	434	0.3537	0.6099
NW_012446418.1	1424	0	0	0
NW_012493983.1	1259	0	0	0
NW_012364243.1	5588	7906	1.4148	2.5636
NW_012434956.1	1497	0	0	0
NW_012495657.1	1256	282	0.2245	0.595
NW_012497982.1	1252	289	0.2308	0.5152
NW_012471672.1	1315	577	0.4388	0.6797
NW_012510183.1	1236	0	0	0
NW_012519565.1	1227	0	0	0
NW_012453513.1	1387	134	0.0966	0.4203
NW_012348947.1	17186	20399	1.187	2.8678
NW_012426503.1	1569	213	0.1358	0.4925
NW_012410393.1	1785	1055	0.591	0.9257
NW_012444063.1	1438	512	0.3561	0.7004
NW_012433884.1	1505	445	0.2957	0.5931
NW_012387115.1	2905	0	0	0
NW_012392656.1	2391	0	0	0
NW_012380294.1	3469	1438	0.4145	0.8764
NW_012383310.1	3235	0	0	0
NW_012399540.1	2070	0	0	0
NW_012373423.1	4065	925	0.2276	0.5475
NW_012558150.1	1089	0	0	0
NW_012485976.1	1276	302	0.2367	0.5923
NW_012564059.1	1042	164	0.1574	0.5295
NW_012435908.1	1490	0	0	0
NW_012354575.1	10227	4814	0.4707	1.5236
NW_012518471.1	1228	290	0.2362	0.6023
NW_012368469.1	4653	3414	0.7337	1.626
NW_012437524.1	1479	0	0	0
NW_012475327.1	1304	0	0	0
NW_012349054.1	16906	21268	1.258	2.2942
NW_012564361.1	1040	104	0.1	0.4247
NW_012360389.1	6915	10595	1.5322	1.932
NW_012366491.1	5041	0	0	0
NW_012434298.1	1502	0	0	0
NW_012519566.1	1227	580	0.4727	0.8458
NW_012369222.1	4539	1319	0.2906	0.8313
NW_012554755.1	1127	282	0.2502	0.6273
NW_012546551.1	1198	289	0.2412	0.5759
NW_012468183.1	1327	290	0.2185	0.5827
NW_012437252.1	1481	296	0.1999	0.5885
NW_012506646.1	1240	0	0	0
NW_012426504.1	1569	232	0.1479	0.5172
NW_012392644.1	2392	204	0.0853	0.3989
NW_012495658.1	1256	1146	0.9124	1.6273
NW_012372064.1	4198	256	0.061	0.3404
NW_012386467.1	2994	491	0.164	0.5386
NW_012559184.1	1079	289	0.2678	0.4409
NW_012413057.1	1737	784	0.4514	0.8128
NW_012491994.1	1263	207	0.1639	0.543
NW_012532639.1	1215	0	0	0
NW_012556024.1	1112	272	0.2446	0.541
NW_012437525.1	1479	0	0	0
NW_012453107.1	1389	275	0.198	0.3979
NW_012467030.1	1331	537	0.4035	1.1746
NW_012551666.1	1166	288	0.247	0.5513
NW_012443531.1	1441	1348	0.9355	2.5691
NW_012491995.1	1263	0	0	0
NW_012500572.1	1248	3762	3.0144	5.5651
NW_012530483.1	1217	0	0	0
NW_012491996.1	1263	251	0.1987	0.5906
NW_012481920.1	1286	0	0	0
NW_012546131.1	1199	0	0	0
NW_012553259.1	1146	0	0	0
NW_012543949.1	1203	0	0	0
NW_012572037.1	1007	12413	12.3267	9.6573
NW_012553338.1	1145	833	0.7275	0.9569
NW_012362992.1	5951	0	0	0
NW_012348586.1	18484	34510	1.867	3.5353
NW_012547273.1	1196	283	0.2366	0.6414
NW_012451440.1	1397	200	0.1432	0.5086
NW_012504965.1	1242	228	0.1836	0.5672
NW_012521800.1	1225	0	0	0
NW_012491997.1	1263	405	0.3207	1.0585
NW_012431213.1	1526	0	0	0
NW_012524082.1	1223	0	0	0
NW_012463527.1	1344	0	0	0
NW_012571407.1	1009	1078	1.0684	1.7193
NW_012368027.1	4729	293	0.062	0.3411
NW_012383459.1	3225	0	0	0
NW_012362740.1	6032	995	0.165	0.5858
NW_012361668.1	6407	1562	0.2438	1.1875
NW_012351091.1	13253	12749	0.962	2.3802
NW_012351585.1	12657	22353	1.7661	3.5884
NW_012505791.1	1241	290	0.2337	0.6399
NW_012415190.1	1704	2008	1.1784	1.1293
NW_012399187.1	2082	200	0.0961	0.422
NW_012400572.1	2034	1135	0.558	1.2014
NW_012490508.1	1266	0	0	0
NW_012516300.1	1230	0	0	0
NW_012429145.1	1544	440	0.285	0.6062
NW_012540722.1	1207	0	0	0
NW_012549495.1	1186	2139	1.8035	2.2924
NW_012397935.1	2128	0	0	0
NW_012571702.1	1008	2851	2.8284	6.5942
NW_012478107.1	1296	0	0	0
NW_012548089.1	1193	0	0	0
NW_012381946.1	3336	0	0	0
NW_012516301.1	1230	290	0.2358	0.4531
NW_012531524.1	1216	0	0	0
NW_012560952.1	1064	289	0.2716	0.4443
NW_012561573.1	1059	76929	72.6431	70.1898
NW_012439798.1	1464	0	0	0
NW_012426090.1	1573	156	0.0992	0.4268
NW_012343822.1	45084	4288	0.0951	0.4439
NW_012520739.1	1226	1305	1.0644	2.6276
NW_012529411.1	1218	0	0	0
NW_012424920.1	1585	0	0	0
NW_012354982.1	9943	7442	0.7485	1.7736
NW_012429369.1	1542	0	0	0
NW_012518472.1	1228	0	0	0
NW_012494525.1	1258	284	0.2258	0.5764
NW_012370753.1	4348	4399	1.0117	4.9134
NW_012561194.1	1062	0	0	0
NW_012481149.1	1288	296	0.2298	0.6178
NW_012510184.1	1236	999	0.8083	1.3252
NW_012357814.1	8180	4595	0.5617	1.2899
NW_012512090.1	1234	0	0	0
NW_012526227.1	1221	0	0	0
NW_012483947.1	1281	1135	0.886	1.6293
NW_012470464.1	1319	2924	2.2168	2.1186
NW_012345941.1	37275	1300	0.0349	0.3015
NW_012459576.1	1360	6237	4.586	6.0575
NW_012529412.1	1218	1415	1.1617	1.1229
NW_012412408.1	1748	1469	0.8404	1.2538
NW_012544598.1	1202	0	0	0
NW_012551418.1	1169	0	0	0
NW_012440905.1	1457	0	0	0
NW_012521801.1	1225	438	0.3576	0.7381
NW_012415117.1	1705	0	0	0
NW_012427729.1	1557	564	0.3622	0.751
NW_012502707.1	1245	0	0	0
NW_012387952.1	2802	4784	1.7074	2.5486
NW_012557760.1	1093	221	0.2022	0.596
NW_012516302.1	1230	0	0	0
NW_012391978.1	2436	392	0.1609	0.5379
NW_012484746.1	1279	0	0	0
NW_012415580.1	1698	815	0.48	0.9682
NW_012557168.1	1099	0	0	0
NW_012442842.1	1445	3411	2.3606	2.4393
NW_012349696.1	15350	36998	2.4103	4.5726
NW_012410109.1	1791	1473	0.8224	1.1807
NW_012492978.1	1261	0	0	0
NW_012435353.1	1494	168	0.1124	0.4534
NW_012425854.1	1575	0	0	0
NW_012375363.1	3899	612	0.157	0.6335
NW_012517375.1	1229	289	0.2352	0.4731
NW_012420858.1	1629	258	0.1584	0.5344
NW_012480789.1	1289	0	0	0
NW_012508363.1	1238	0	0	0
NW_012349790.1	15143	14011	0.9252	1.8277
NW_012398342.1	2113	2446	1.1576	1.8104
NW_012440906.1	1457	278	0.1908	0.5774
NW_012482731.1	1284	1072	0.8349	2.5806
NW_012347867.1	22731	46579	2.0491	5.6971
NW_012396026.1	2207	841	0.3811	1.0037
NW_012540723.1	1207	0	0	0
NW_012367859.1	4757	1542	0.3242	0.9499
NW_012530484.1	1217	799	0.6565	1.2411
NW_012531525.1	1216	580	0.477	1.1404
NW_012501955.1	1246	580	0.4655	1.2264
NW_012365401.1	5281	260	0.0492	0.3087
NW_012560487.1	1068	5483	5.1339	12.315
NW_012351223.1	13081	26521	2.0274	4.3654
NW_012424814.1	1586	1412	0.8903	2.8673
NW_012533697.1	1214	211	0.1738	0.3782
NW_012362101.1	6252	0	0	0
NW_012568142.1	1021	0	0	0
NW_012343636.1	48526	9998	0.206	0.9565
NW_012492462.1	1262	0	0	0
NW_012403231.1	1952	1445	0.7403	1.5271
NW_012553564.1	1142	2419	2.1182	4.9257
NW_012385003.1	3172	243	0.0766	0.379
NW_012386386.1	3005	974	0.3241	0.9633
NW_012434299.1	1502	477	0.3176	0.5747
NW_012429810.1	1538	222	0.1443	0.5112
NW_012454591.1	1382	0	0	0
NW_012413666.1	1727	0	0	0
NW_012408101.1	1832	274	0.1496	0.5209
NW_012407401.1	1847	0	0	0
NW_012483123.1	1283	971	0.7568	1.7042
NW_012360746.1	6775	7731	1.1411	2.2292
NW_012416543.1	1684	0	0	0
NW_012386513.1	2986	3179	1.0646	1.6209
NW_012409723.1	1799	860	0.478	0.6597
NW_012405152.1	1901	488	0.2567	0.6603
NW_012537793.1	1210	806	0.6661	1.1228
NW_012410337.1	1786	0	0	0
NW_012568866.1	1018	0	0	0
NW_012395402.1	2238	1271	0.5679	0.7867
NW_012504206.1	1243	277	0.2228	0.4369
NW_012428398.1	1551	571	0.3681	0.5645
NW_012408742.1	1819	284	0.1561	0.4588
NW_012499861.1	1249	0	0	0
NW_012434807.1	1498	0	0	0
NW_012553708.1	1140	290	0.2544	0.53
NW_012354487.1	10293	11677	1.1345	2.425
NW_012487350.1	1273	284	0.2231	0.4288
NW_012471356.1	1316	2360	1.7933	3.5054
NW_012544599.1	1202	0	0	0
NW_012457872.1	1367	290	0.2121	0.4781
NW_012538774.1	1209	0	0	0
NW_012444241.1	1437	217	0.151	0.5161
NW_012514187.1	1232	0	0	0
NW_012393976.1	2313	4286	1.853	2.3206
NW_012488652.1	1270	2164	1.7039	3.8556
NW_012396956.1	2168	0	0	0
NW_012558343.1	1087	1077	0.9908	1.5226
NW_012482320.1	1285	267	0.2078	0.6015
NW_012420500.1	1633	1048	0.6418	0.7951
NW_012455008.1	1380	733	0.5312	1.4116
NW_012480790.1	1289	273	0.2118	0.4086
NW_012443532.1	1441	188	0.1305	0.4882
NW_012358221.1	7932	1680	0.2118	0.7858
NW_012394730.1	2274	144	0.0633	0.2435
NW_012531526.1	1216	569	0.4679	0.848
NW_012461483.1	1352	0	0	0
NW_012497983.1	1252	268	0.2141	0.6124
NW_012376216.1	3826	2751	0.719	1.3201
NW_012426697.1	1567	0	0	0
NW_012354482.1	10296	14167	1.376	5.6145
NW_012485544.1	1277	1466	1.148	1.5942
NW_012422661.1	1608	242	0.1505	0.5217
NW_012558151.1	1089	0	0	0
NW_012393489.1	2340	862	0.3684	0.8286
NW_012566435.1	1029	1114	1.0826	1.944
NW_012495074.1	1257	108	0.0859	0.3956
NW_012461244.1	1353	0	0	0
NW_012570471.1	1012	215	0.2125	0.6122
NW_012489561.1	1268	550	0.4338	0.6782
NW_012433885.1	1505	0	0	0
NW_012359286.1	7412	0	0	0
NW_012469004.1	1324	1893	1.4298	3.6358
NW_012505792.1	1241	0	0	0
NW_012548090.1	1193	1621	1.3588	1.967
NW_012411492.1	1765	277	0.1569	0.5284
NW_012450663.1	1401	291	0.2077	0.5406
NW_012547585.1	1195	244	0.2042	0.5986
NW_012473618.1	1309	0	0	0
NW_012516303.1	1230	0	0	0
NW_012384329.1	3180	0	0	0
NW_012412409.1	1748	0	0	0
NW_012395721.1	2221	1646	0.7411	1.1332
NW_012427622.1	1558	869	0.5578	2.3867
NW_012348545.1	18665	52760	2.8267	10.2354
NW_012412206.1	1752	2611	1.4903	4.6894
NW_012528378.1	1219	0	0	0
NW_012349740.1	15252	26879	1.7623	4.5025
NW_012392322.1	2413	676	0.2801	0.6704
NW_012566436.1	1029	0	0	0
NW_012341884.1	44131	25332	0.574	1.8893
NW_012403267.1	1951	289	0.1481	0.4321
NW_012526228.1	1221	0	0	0
NW_012538775.1	1209	253	0.2093	0.5978
NW_012510185.1	1236	0	0	0
NW_012355637.1	9521	6621	0.6954	1.8019
NW_012367147.1	4896	2069	0.4226	0.9498
NW_012414766.1	1710	293	0.1713	0.4838
NW_012543257.1	1204	0	0	0
NW_012554585.1	1129	8026	7.1089	10.0446
NW_012550955.1	1174	510	0.4344	0.8501
NW_012473295.1	1310	423	0.3229	0.5665
NW_012506647.1	1240	460	0.371	0.6627
NW_012416322.1	1687	286	0.1695	0.3752
NW_012361141.1	6602	1269	0.1922	0.8131
NW_012498597.1	1251	490	0.3917	0.7836
NW_012561447.1	1060	0	0	0
NC_001960.1	16665	16663017	999.881	1,423.3027

Summary

Globals

ACGT Content

Coverage

Mapping Quality

Insert size

Mismatches and indels

Chromosome stats

Coverage across reference

Coverage Histogram

Coverage Histogram (0-50X)

Genome Fraction Coverage

Duplication Rate Histogram

Mapped Reads Nucleotide Content

Mapped Reads GC-content Distribution

Homopolymer Indels

Mapping Quality Across Reference

Mapping Quality Histogram

Insert Size Across Reference

Insert Size Histogram

Contents