Bismark Processing Report

/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/Sealice_F2_S22_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/Sealice_F2_S22_R2_001_val_2.fq.gz

Data processed at 19:30 on 2019-08-27


Sequence pairs analysed in total 163685586
Paired-end alignments with a unique best hit 35458889
Pairs without alignments under any condition 102308578
Pairs that did not map uniquely 25918119
Genomic sequence context not extractable (edges of chromosomes) 2

Cytosine Methylation

Total C's analysed 1537236987
Methylated C's in CpG context 3260062
Methylated C's in CHG context 2642635
Methylated C's in CHH context 16005844
Methylated C's in Unknown context 1753344
Unmethylated C's in CpG context 247403724
Unmethylated C's in CHG context 256800799
Unmethylated C's in CHH context 1011123923
Unmethylated C's in Unknown context 13508493
Percentage methylation (CpG context) 1.3%
Percentage methylation (CHG context) 1.0%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8957752 original top strand
CTOT 8810464 complementary to original top strand
CTOB 8783868 complementary to original bottom strand
OB 8906803 original bottom strand