Bismark Processing Report

/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/Sealice_F1_S20_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/Sealice_F1_S20_R2_001_val_2.fq.gz

Data processed at 19:30 on 2019-08-27


Sequence pairs analysed in total 225746922
Paired-end alignments with a unique best hit 63327611
Pairs without alignments under any condition 121134921
Pairs that did not map uniquely 41284390
Genomic sequence context not extractable (edges of chromosomes) 3

Cytosine Methylation

Total C's analysed 2717362145
Methylated C's in CpG context 5831950
Methylated C's in CHG context 5234399
Methylated C's in CHH context 28580018
Methylated C's in Unknown context 3139344
Unmethylated C's in CpG context 414300782
Unmethylated C's in CHG context 433425327
Unmethylated C's in CHH context 1829989669
Unmethylated C's in Unknown context 24817838
Percentage methylation (CpG context) 1.4%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 17963269 original top strand
CTOT 13634042 complementary to original top strand
CTOB 13707963 complementary to original bottom strand
OB 18022334 original bottom strand