Sequence pairs analysed in total:	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	22721	511	529	48633	48633
Mapping efficiency:	22.7% 	0.5% 	0.5% 	48.6% 	48.6% 
Sequence pairs with no alignments under any condition:	72870	99288	99269	34055	34055
Sequence pairs did not map uniquely:	4409	201	202	17312	17312
Sequence pairs which were discarded because genomic sequence could not be extracted:	5	0	0	9	9
C methylated in CpG context:	75.8%	73.5%	72.5%	75.9%	75.9%
C methylated in CHG context:	2.6%	1.5%	1.5%	1.2%	1.2%
C methylated in CHH context:	3.0%	3.0%	2.8%	2.2%	2.2%
C methylated in unknown context (CN or CHN):	42.7%	36.1%	26.1%	28.0%	28.0%