Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	33792
Mapping efficiency:	33.8% 
Sequence pairs with no alignments under any condition:	52674
Sequence pairs did not map uniquely:	13534
Sequence pairs which were discarded because genomic sequence could not be extracted:	2
C methylated in CpG context:	78.3%
C methylated in CHG context:	0.8%
C methylated in CHH context:	1.4%
C methylated in unknown context (CN or CHN):	27.0%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	35217
Mapping efficiency:	35.2% 
Sequence pairs with no alignments under any condition:	48948
Sequence pairs did not map uniquely:	15835
Sequence pairs which were discarded because genomic sequence could not be extracted:	2
C methylated in CpG context:	77.7%
C methylated in CHG context:	0.8%
C methylated in CHH context:	1.6%
C methylated in unknown context (CN or CHN):	31.0%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	33128
Mapping efficiency:	33.1% 
Sequence pairs with no alignments under any condition:	56167
Sequence pairs did not map uniquely:	10705
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	76.9%
C methylated in CHG context:	0.8%
C methylated in CHH context:	1.1%
C methylated in unknown context (CN or CHN):	24.8%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	34587
Mapping efficiency:	34.6% 
Sequence pairs with no alignments under any condition:	49537
Sequence pairs did not map uniquely:	15876
Sequence pairs which were discarded because genomic sequence could not be extracted:	1
C methylated in CpG context:	78.6%
C methylated in CHG context:	0.8%
C methylated in CHH context:	1.4%
C methylated in unknown context (CN or CHN):	26.3%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	28259
Mapping efficiency:	28.3% 
Sequence pairs with no alignments under any condition:	59082
Sequence pairs did not map uniquely:	12659
Sequence pairs which were discarded because genomic sequence could not be extracted:	4
C methylated in CpG context:	78.9%
C methylated in CHG context:	1.0%
C methylated in CHH context:	1.5%
C methylated in unknown context (CN or CHN):	33.3%