Category	AS-0.2	AS-0.6	AS-1	AS-1I60	AS-1.2I60	AS-2
Sequence pairs analysed in total:	100000	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	12148	28475	39617	38387	44496	74102
Mapping efficiency:	12.1% 	28.5% 	39.6% 	38.4% 	44.5% 	74.1% 
Sequence pairs with no alignments under any condition:	76690	53180	39006	41312	33898	168
Sequence pairs did not map uniquely:	11162	18345	21377	20301	21606	25730
Sequence pairs which were discarded because genomic sequence could not be extracted:	0	0	0	0	0	0
C methylated in CpG context:	1.1%	1.4%	1.7%	1.7%	1.9%	3.8%
C methylated in CHG context:	0.7%	1.2%	1.5%	1.5%	1.6%	3.4%
C methylated in CHH context:	1.0%	1.5%	2.0%	1.9%	2.5%	8.4%
C methylated in unknown context (CN or CHN):	4.6%	11.8%	11.8%	11.7%	12.0%	21.0%
Sequence pairs analysed in total:	100000	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	9872	21943	30940	29876	35416	76713
Mapping efficiency:	9.9% 	21.9% 	30.9% 	29.9% 	35.4% 	76.7% 
Sequence pairs with no alignments under any condition:	79581	61997	50376	52493	45815	202
Sequence pairs did not map uniquely:	10547	16060	18684	17631	18769	23085
Sequence pairs which were discarded because genomic sequence could not be extracted:	0	0	0	0	0	0
C methylated in CpG context:	0.9%	1.3%	1.6%	1.6%	1.8%	5.5%
C methylated in CHG context:	0.7%	1.0%	1.3%	1.3%	1.5%	5.1%
C methylated in CHH context:	1.0%	1.6%	2.3%	2.0%	2.8%	16.0%
C methylated in unknown context (CN or CHN):	5.4%	11.3%	11.9%	11.4%	12.1%	30.5%