Sequence pairs analysed in total: 100000 100000 100000 100000 100000 100000 Number of paired-end alignments with a unique best hit: 32931 48756 59948 57593 64204 78422 Mapping efficiency: 32.9% 48.8% 59.9% 57.6% 64.2% 78.4% Sequence pairs with no alignments under any condition: 53737 33728 20586 24568 16872 159 Sequence pairs did not map uniquely: 13332 17516 19466 17839 18924 21419 Sequence pairs which were discarded because genomic sequence could not be extracted: 4 6 9 9 15 14 C methylated in CpG context: 77.5% 76.1% 73.9% 73.9% 72.5% 70.3% C methylated in CHG context: 0.7% 1.2% 1.5% 1.5% 1.8% 2.6% C methylated in CHH context: 1.2% 2.3% 3.4% 3.6% 4.4% 7.1% C methylated in unknown context (CN or CHN): 26.4% 27.5% 21.3% 21.6% 20.6% 24.3%