Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 332 529 753 Mapping efficiency: 0.3% 0.5% 0.8% Sequence pairs with no alignments under any condition: 99518 99269 99002 Sequence pairs did not map uniquely: 150 202 245 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 75.5% 72.5% 70.2% C methylated in CHG context: 0.8% 1.5% 2.4% C methylated in CHH context: 1.5% 2.8% 9.0% C methylated in unknown context (CN or CHN): 12.5% 26.1% 28.0% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 1392 2013 2585 Mapping efficiency: 1.4% 2.0% 2.6% Sequence pairs with no alignments under any condition: 98079 97281 96621 Sequence pairs did not map uniquely: 529 706 794 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 1 C methylated in CpG context: 79.3% 77.5% 74.3% C methylated in CHG context: 0.7% 1.2% 1.9% C methylated in CHH context: 1.5% 3.8% 6.6% C methylated in unknown context (CN or CHN): 31.1% 37.2% 26.7% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 78 168 549 Mapping efficiency: 0.1% 0.2% 0.5% Sequence pairs with no alignments under any condition: 99878 99755 99290 Sequence pairs did not map uniquely: 44 77 161 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 1 0 C methylated in CpG context: 83.2% 72.5% 67.1% C methylated in CHG context: 0.1% 1.1% 7.5% C methylated in CHH context: 0.7% 21.8% 41.9% C methylated in unknown context (CN or CHN): 100.0% 48.4% 47.4% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 372 548 854 Mapping efficiency: 0.4% 0.5% 0.9% Sequence pairs with no alignments under any condition: 99491 99262 98892 Sequence pairs did not map uniquely: 137 190 254 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 76.4% 74.8% 71.7% C methylated in CHG context: 0.8% 1.2% 2.8% C methylated in CHH context: 2.9% 4.7% 15.7% C methylated in unknown context (CN or CHN): 0.0% 29.2% 35.9% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 162 285 541 Mapping efficiency: 0.2% 0.3% 0.5% Sequence pairs with no alignments under any condition: 99756 99586 99265 Sequence pairs did not map uniquely: 82 129 194 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 79.9% 78.3% 73.1% C methylated in CHG context: 1.0% 2.1% 4.5% C methylated in CHH context: 0.9% 6.0% 17.6% C methylated in unknown context (CN or CHN): 18.2% 31.7% 34.9% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 63 127 328 Mapping efficiency: 0.1% 0.1% 0.3% Sequence pairs with no alignments under any condition: 99908 99828 99576 Sequence pairs did not map uniquely: 29 45 96 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 82.5% 74.2% 69.7% C methylated in CHG context: 0.3% 1.1% 5.5% C methylated in CHH context: 4.2% 10.4% 28.3% C methylated in unknown context (CN or CHN): 16.7% 20.0% 39.7% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 411 677 966 Mapping efficiency: 0.4% 0.7% 1.0% Sequence pairs with no alignments under any condition: 99370 99032 98674 Sequence pairs did not map uniquely: 219 291 360 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 77.8% 75.8% 72.7% C methylated in CHG context: 0.7% 1.5% 2.9% C methylated in CHH context: 1.5% 4.5% 11.3% C methylated in unknown context (CN or CHN): 14.3% 29.7% 36.3% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 562 893 1178 Mapping efficiency: 0.6% 0.9% 1.2% Sequence pairs with no alignments under any condition: 99247 98861 98529 Sequence pairs did not map uniquely: 191 246 293 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 75.4% 74.6% 72.3% C methylated in CHG context: 0.7% 1.1% 1.7% C methylated in CHH context: 0.8% 2.5% 4.5% C methylated in unknown context (CN or CHN): 40.0% 23.5% 22.7% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 9 40 188 Mapping efficiency: 0.0% 0.0% 0.2% Sequence pairs with no alignments under any condition: 99991 99953 99777 Sequence pairs did not map uniquely: 0 7 35 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 88.3% 71.6% 59.6% C methylated in CHG context: 2.0% 3.1% 9.2% C methylated in CHH context: 0.4% 18.0% 26.8% C methylated in unknown context (CN or CHN): 0.0% 63.2% 37.7% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 53 103 258 Mapping efficiency: 0.1% 0.1% 0.3% Sequence pairs with no alignments under any condition: 99922 99850 99664 Sequence pairs did not map uniquely: 25 47 78 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 80.7% 74.9% 63.2% C methylated in CHG context: 0.4% 0.6% 4.9% C methylated in CHH context: 1.0% 6.4% 20.1% C methylated in unknown context (CN or CHN): 20.0% 21.4% 30.5% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 151 260 529 Mapping efficiency: 0.2% 0.3% 0.5% Sequence pairs with no alignments under any condition: 99777 99638 99294 Sequence pairs did not map uniquely: 72 102 177 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 78.8% 76.3% 70.9% C methylated in CHG context: 0.8% 1.9% 4.7% C methylated in CHH context: 0.9% 2.8% 19.1% C methylated in unknown context (CN or CHN): 37.5% 20.0% 36.1% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 112 187 389 Mapping efficiency: 0.1% 0.2% 0.4% Sequence pairs with no alignments under any condition: 99832 99724 99495 Sequence pairs did not map uniquely: 56 89 116 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 77.9% 71.2% 69.2% C methylated in CHG context: 0.2% 0.9% 5.7% C methylated in CHH context: 1.1% 6.0% 31.7% C methylated in unknown context (CN or CHN): 40.0% 35.0% 44.2% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 317 511 869 Mapping efficiency: 0.3% 0.5% 0.9% Sequence pairs with no alignments under any condition: 99527 99256 98823 Sequence pairs did not map uniquely: 156 233 308 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 80.5% 75.3% 70.6% C methylated in CHG context: 1.1% 1.4% 3.2% C methylated in CHH context: 2.1% 4.6% 15.1% C methylated in unknown context (CN or CHN): 66.7% 44.0% 38.1% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 436 1036 1379 Mapping efficiency: 0.4% 1.0% 1.4% Sequence pairs with no alignments under any condition: 99436 98659 98257 Sequence pairs did not map uniquely: 128 305 364 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 1 C methylated in CpG context: 78.1% 77.0% 74.9% C methylated in CHG context: 0.8% 1.6% 2.0% C methylated in CHH context: 1.9% 4.3% 7.0% C methylated in unknown context (CN or CHN): 14.0% 20.4% 25.3% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 57 111 281 Mapping efficiency: 0.1% 0.1% 0.3% Sequence pairs with no alignments under any condition: 99916 99842 99626 Sequence pairs did not map uniquely: 27 47 93 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 85.6% 80.7% 70.8% C methylated in CHG context: 0.6% 1.5% 4.9% C methylated in CHH context: 0.5% 8.0% 21.3% C methylated in unknown context (CN or CHN): 20.0% 16.7% 30.4% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 698 1107 1465 Mapping efficiency: 0.7% 1.1% 1.5% Sequence pairs with no alignments under any condition: 99049 98512 98093 Sequence pairs did not map uniquely: 253 381 442 Sequence pairs which were discarded because genomic sequence could not be extracted: 1 2 3 C methylated in CpG context: 78.2% 75.7% 72.3% C methylated in CHG context: 0.7% 1.0% 1.8% C methylated in CHH context: 0.6% 1.2% 3.3% C methylated in unknown context (CN or CHN): 39.1% 29.6% 23.7% Sequence pairs analysed in total: 100000 100000 100000 Number of paired-end alignments with a unique best hit: 63 123 300 Mapping efficiency: 0.1% 0.1% 0.3% Sequence pairs with no alignments under any condition: 99895 99812 99608 Sequence pairs did not map uniquely: 42 65 92 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 C methylated in CpG context: 78.3% 76.4% 68.9% C methylated in CHG context: 0.7% 1.9% 4.4% C methylated in CHH context: 0.5% 5.5% 17.2% Sequence pairs analysed in total: 100000 19.2% 29.9% Number of paired-end alignments with a unique best hit: 242 100000 100000 Mapping efficiency: 0.2% 438 699 Sequence pairs with no alignments under any condition: 99635 0.4% 0.7% Sequence pairs did not map uniquely: 123 99373 99063 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 189 238 C methylated in CpG context: 79.6% 0 0 C methylated in CHG context: 1.5% 77.2% 71.9% C methylated in CHH context: 2.6% 1.9% 2.8% C methylated in unknown context (CN or CHN): 50.0% 3.5% 8.3% Sequence pairs analysed in total: 100000 38.2% 27.9% Number of paired-end alignments with a unique best hit: 483 100000 Mapping efficiency: 0.5% 732 Sequence pairs with no alignments under any condition: 99319 0.7% Sequence pairs did not map uniquely: 198 99003 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 265 C methylated in CpG context: 77.6% 0 C methylated in CHG context: 0.8% 76.9% C methylated in CHH context: 1.0% 1.1% C methylated in unknown context (CN or CHN): 75.0% 2.1% Sequence pairs analysed in total: 100000 37.4% Number of paired-end alignments with a unique best hit: 426 100000 Mapping efficiency: 0.4% 632 Sequence pairs with no alignments under any condition: 99338 0.6% Sequence pairs did not map uniquely: 236 99041 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 327 C methylated in CpG context: 81.6% 0 C methylated in CHG context: 0.9% 79.8% C methylated in CHH context: 1.7% 1.5% C methylated in unknown context (CN or CHN): 40.0% 4.6% 41.6%