Sequence pairs analysed in total:	100000	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	83	226	361	352	449	90189
Mapping efficiency:	0.1% 	0.2% 	0.4% 	0.4% 	0.4% 	90.2% 
Sequence pairs with no alignments under any condition:	99829	99612	99457	99472	99351	327
Sequence pairs did not map uniquely:	88	162	182	176	200	9484
Sequence pairs which were discarded because genomic sequence could not be extracted:	0	0	0	0	0	0
C methylated in CpG context:	1.6%	2.1%	2.4%	2.3%	2.9%	9.4%
C methylated in CHG context:	1.4%	1.5%	1.9%	1.9%	2.9%	9.5%
C methylated in CHH context:	0.8%	1.7%	3.4%	2.9%	5.0%	19.1%
C methylated in unknown context (CN or CHN):	12.5%	19.4%	15.7%	15.7%	17.8%	25.2%
Sequence pairs analysed in total:	100000	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	136	383	570	545	705	90064
Mapping efficiency:	0.1% 	0.4% 	0.6% 	0.5% 	0.7% 	90.1% 
Sequence pairs with no alignments under any condition:	99711	99350	99108	99137	98948	355
Sequence pairs did not map uniquely:	153	267	322	318	347	9581
Sequence pairs which were discarded because genomic sequence could not be extracted:	0	0	0	0	0	0
C methylated in CpG context:	1.0%	1.4%	2.2%	2.1%	2.6%	9.5%
C methylated in CHG context:	0.4%	1.5%	2.3%	2.2%	2.7%	9.6%
C methylated in CHH context:	1.6%	2.1%	3.1%	2.8%	4.8%	19.2%
C methylated in unknown context (CN or CHN):	4.5%	11.9%	12.8%	12.3%	13.4%	25.3%
Sequence pairs analysed in total:	100000	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	93	209	304	291	427	90500
Mapping efficiency:	0.1% 	0.2% 	0.3% 	0.3% 	0.4% 	90.5% 
Sequence pairs with no alignments under any condition:	99813	99646	99514	99540	99396	935
Sequence pairs did not map uniquely:	94	145	182	169	177	8565
Sequence pairs which were discarded because genomic sequence could not be extracted:	0	0	0	0	0	0
C methylated in CpG context:	0.6%	1.1%	2.0%	1.8%	2.5%	10.8%
C methylated in CHG context:	0.6%	1.4%	1.6%	1.5%	2.8%	10.7%
C methylated in CHH context:	0.8%	1.8%	3.0%	3.3%	7.1%	23.3%
C methylated in unknown context (CN or CHN):	16.7%	9.8%	11.2%	11.1%	14.5%	28.4%
Sequence pairs analysed in total:	100000	100000	100000	100000	100000	100000
Number of paired-end alignments with a unique best hit:	13	42	77	77	141	90518
Mapping efficiency:	0.0% 	0.0% 	0.1% 	0.1% 	0.1% 	90.5% 
Sequence pairs with no alignments under any condition:	99974	99935	99894	99897	99821	910
Sequence pairs did not map uniquely:	13	23	29	26	38	8572
Sequence pairs which were discarded because genomic sequence could not be extracted:	0	0	0	0	0	0
C methylated in CpG context:	0.0%	1.7%	3.6%	3.5%	3.4%	10.8%
C methylated in CHG context:	1.8%	2.3%	4.6%	4.5%	4.8%	10.8%
C methylated in CHH context:	1.3%	1.9%	5.5%	5.5%	9.8%	23.2%
C methylated in unknown context (CN or CHN):	0.0%	20.0%	9.6%	8.3%	17.9%	28.4%