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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 0.9

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2019-07-23, 23:07 based on data in: /home/srlab/GitHub/Shelly_Pgenerosa/multiqc/FASTQC

        General Statistics

        Showing 88/88 rows and 4/5 columns.
        Sample Name% Dups% GCLengthM Seqs
        16C_26psu_1_S13_L001_R1_001
        16.0%
        27%
        117
        22.2
        16C_26psu_1_S13_L001_R2_001
        16.0%
        27%
        117
        22.1
        16C_26psu_1_S13_L002_R1_001
        15.6%
        27%
        117
        22.1
        16C_26psu_1_S13_L002_R2_001
        15.5%
        27%
        117
        22.0
        16C_26psu_2_S14_L001_R1_001
        18.8%
        27%
        119
        17.2
        16C_26psu_2_S14_L001_R2_001
        18.5%
        27%
        119
        17.2
        16C_26psu_2_S14_L002_R1_001
        18.4%
        27%
        118
        17.2
        16C_26psu_2_S14_L002_R2_001
        17.9%
        28%
        119
        17.2
        16C_26psu_3_S15_L001_R1_001
        24.4%
        28%
        120
        14.7
        16C_26psu_3_S15_L001_R2_001
        23.4%
        29%
        120
        14.6
        16C_26psu_3_S15_L002_R1_001
        23.8%
        28%
        120
        14.6
        16C_26psu_3_S15_L002_R2_001
        23.0%
        29%
        120
        14.6
        16C_26psu_4_S16_L001_R1_001
        15.8%
        28%
        115
        17.3
        16C_26psu_4_S16_L001_R2_001
        15.7%
        28%
        115
        17.2
        16C_26psu_4_S16_L002_R1_001
        15.4%
        28%
        115
        17.2
        16C_26psu_4_S16_L002_R2_001
        15.4%
        28%
        115
        17.2
        16C_32psu_1_S1_L001_R1_001
        17.0%
        28%
        109
        19.6
        16C_32psu_1_S1_L001_R2_001
        17.0%
        28%
        109
        19.6
        16C_32psu_1_S1_L002_R1_001
        16.6%
        28%
        109
        19.6
        16C_32psu_1_S1_L002_R2_001
        16.5%
        28%
        109
        19.5
        16C_32psu_2_S2_L001_R1_001
        18.3%
        28%
        110
        17.7
        16C_32psu_2_S2_L001_R2_001
        18.1%
        28%
        111
        17.7
        16C_32psu_2_S2_L002_R1_001
        17.4%
        28%
        110
        17.7
        16C_32psu_2_S2_L002_R2_001
        17.5%
        28%
        111
        17.7
        16C_32psu_3_S3_L001_R1_001
        14.0%
        28%
        107
        13.7
        16C_32psu_3_S3_L001_R2_001
        13.9%
        29%
        107
        13.7
        16C_32psu_3_S3_L002_R1_001
        13.6%
        28%
        107
        13.7
        16C_32psu_3_S3_L002_R2_001
        13.4%
        29%
        107
        13.6
        16C_32psu_4_S4_L001_R1_001
        17.5%
        26%
        125
        15.7
        16C_32psu_4_S4_L001_R2_001
        16.6%
        26%
        125
        15.7
        16C_32psu_4_S4_L002_R1_001
        16.9%
        26%
        125
        15.6
        16C_32psu_4_S4_L002_R2_001
        16.1%
        26%
        125
        15.6
        8C_26psu_1_S9_L001_R1_001
        15.2%
        28%
        118
        18.2
        8C_26psu_1_S9_L001_R2_001
        15.0%
        28%
        119
        18.1
        8C_26psu_1_S9_L002_R1_001
        14.5%
        28%
        118
        18.1
        8C_26psu_1_S9_L002_R2_001
        14.3%
        28%
        118
        18.0
        8C_26psu_2_S10_L001_R1_001
        17.8%
        27%
        114
        18.5
        8C_26psu_2_S10_L001_R2_001
        17.6%
        28%
        114
        18.5
        8C_26psu_2_S10_L002_R1_001
        17.2%
        27%
        114
        18.4
        8C_26psu_2_S10_L002_R2_001
        17.0%
        28%
        114
        18.4
        8C_26psu_3_S11_L001_R1_001
        17.6%
        29%
        106
        17.2
        8C_26psu_3_S11_L001_R2_001
        17.3%
        29%
        106
        17.2
        8C_26psu_3_S11_L002_R1_001
        17.1%
        29%
        106
        17.2
        8C_26psu_3_S11_L002_R2_001
        16.8%
        29%
        106
        17.2
        8C_26psu_4_S12_L001_R1_001
        31.6%
        26%
        124
        12.6
        8C_26psu_4_S12_L001_R2_001
        30.0%
        27%
        125
        12.6
        8C_26psu_4_S12_L002_R1_001
        30.5%
        26%
        124
        12.5
        8C_26psu_4_S12_L002_R2_001
        29.2%
        27%
        125
        12.5
        8C_32psu_1_S5_L001_R1_001
        15.0%
        29%
        99
        14.0
        8C_32psu_1_S5_L001_R2_001
        15.2%
        30%
        99
        14.0
        8C_32psu_1_S5_L002_R1_001
        14.4%
        29%
        99
        14.0
        8C_32psu_1_S5_L002_R2_001
        14.4%
        30%
        99
        14.0
        8C_32psu_2_S6_L001_R1_001
        13.9%
        28%
        115
        12.9
        8C_32psu_2_S6_L001_R2_001
        14.0%
        28%
        115
        12.9
        8C_32psu_2_S6_L002_R1_001
        13.3%
        28%
        115
        12.9
        8C_32psu_2_S6_L002_R2_001
        13.2%
        28%
        115
        12.9
        8C_32psu_3_S7_L001_R1_001
        15.3%
        28%
        110
        14.2
        8C_32psu_3_S7_L001_R2_001
        15.3%
        28%
        110
        14.1
        8C_32psu_3_S7_L002_R1_001
        14.9%
        28%
        110
        14.1
        8C_32psu_3_S7_L002_R2_001
        14.9%
        28%
        110
        14.1
        8C_32psu_4_S8_L001_R1_001
        17.3%
        26%
        121
        14.7
        8C_32psu_4_S8_L001_R2_001
        16.5%
        26%
        121
        14.7
        8C_32psu_4_S8_L002_R1_001
        16.7%
        27%
        121
        14.6
        8C_32psu_4_S8_L002_R2_001
        16.1%
        27%
        121
        14.6
        CTRL_16C_26psu_1_S19_L001_R1_001
        18.2%
        28%
        117
        18.6
        CTRL_16C_26psu_1_S19_L001_R2_001
        17.7%
        28%
        118
        18.6
        CTRL_16C_26psu_1_S19_L002_R1_001
        17.6%
        28%
        117
        18.5
        CTRL_16C_26psu_1_S19_L002_R2_001
        17.2%
        28%
        117
        18.5
        CTRL_16C_26psu_2_S21_L001_R1_001
        13.4%
        30%
        106
        13.4
        CTRL_16C_26psu_2_S21_L001_R2_001
        13.3%
        30%
        107
        13.4
        CTRL_16C_26psu_2_S21_L002_R1_001
        13.1%
        30%
        106
        13.4
        CTRL_16C_26psu_2_S21_L002_R2_001
        12.8%
        30%
        107
        13.4
        CTRL_8C_26psu_1_S17_L001_R1_001
        19.7%
        26%
        119
        13.8
        CTRL_8C_26psu_1_S17_L001_R2_001
        19.5%
        26%
        120
        13.8
        CTRL_8C_26psu_1_S17_L002_R1_001
        18.9%
        26%
        119
        13.6
        CTRL_8C_26psu_1_S17_L002_R2_001
        18.8%
        26%
        120
        13.6
        CTRL_8C_26psu_2_S18_L001_R1_001
        18.8%
        30%
        98
        17.0
        CTRL_8C_26psu_2_S18_L001_R2_001
        18.9%
        30%
        98
        16.9
        CTRL_8C_26psu_2_S18_L002_R1_001
        18.3%
        30%
        98
        17.0
        CTRL_8C_26psu_2_S18_L002_R2_001
        18.2%
        30%
        98
        16.9
        Sealice_F1_S20_L001_R1_001
        33.2%
        21%
        127
        113.4
        Sealice_F1_S20_L001_R2_001
        33.1%
        22%
        127
        113.3
        Sealice_F1_S20_L002_R1_001
        32.7%
        22%
        127
        112.7
        Sealice_F1_S20_L002_R2_001
        32.0%
        22%
        127
        112.5
        Sealice_F2_S22_L001_R1_001
        28.1%
        23%
        126
        82.2
        Sealice_F2_S22_L001_R2_001
        26.9%
        23%
        126
        82.1
        Sealice_F2_S22_L002_R1_001
        27.8%
        23%
        125
        81.7
        Sealice_F2_S22_L002_R2_001
        26.4%
        23%
        126
        81.6

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        loading..

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        loading..

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a heatmap row to see a line plot for that dataset.

        rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        loading..

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        loading..

        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        loading..

        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        loading..

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        88 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        No samples found with any adapter contamination > 0.1%

        MultiQC v0.9 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, chroma.js, FileSaver.js and clipboard.js.