Basic Statistics
Measure | Value |
---|---|
Filename | 8C_26psu_1_S9_L001_R2_001_trimmed.5bp_3prime.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18148337 |
Sequences flagged as poor quality | 0 |
Sequence length | 15-145 |
%GC | 27 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 19253 | 0.10608685523086771 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGACACT | 5120 | 0.0 | 66.48005 | 1 |
GACACTG | 6270 | 0.0 | 53.855682 | 2 |
ACACTGC | 6745 | 0.0 | 49.982643 | 3 |
TCTTCCG | 35710 | 0.0 | 49.938755 | 2 |
TGTCAGC | 30 | 0.009037469 | 49.131718 | 110-111 |
CACTGCC | 6925 | 0.0 | 48.52767 | 4 |
TTCCGAT | 35710 | 0.0 | 47.204277 | 4 |
TGCCACA | 7035 | 0.0 | 47.15574 | 7 |
CTGCCAC | 7160 | 0.0 | 46.85998 | 6 |
ACTGCCA | 7250 | 0.0 | 46.20387 | 5 |
CTTCCGA | 37630 | 0.0 | 45.942535 | 3 |
CAAGCTG | 95 | 6.2809704E-9 | 45.424225 | 3 |
GCCACAT | 7540 | 0.0 | 44.212296 | 8 |
CGATCTG | 2480 | 0.0 | 44.153778 | 7 |
CCGATCT | 35870 | 0.0 | 43.50526 | 6 |
TCCGATC | 37725 | 0.0 | 41.909386 | 5 |
GATCTGC | 795 | 0.0 | 41.389355 | 8 |
CTGCCGA | 55 | 0.0013821677 | 39.23034 | 2 |
CTCTTCC | 47045 | 0.0 | 38.583668 | 1 |
CTTGCGA | 60 | 0.002119216 | 35.960842 | 3 |