FastQCFastQC Report
Mon 22 Jul 2019
CTRL_8C_26psu_1_S17_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCTRL_8C_26psu_1_S17_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13627098
Sequences flagged as poor quality0
Sequence length150
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCAGC100.007214006144.173972
TGGCTCC202.2071326E-6143.988823
CCTGGCT2500.0138.407011
ACTGGCT2450.0135.3471
GCTGGCT800.0135.16311
CATGGCT1650.0131.067251
TCTGGCT2500.0129.756581
CTTGGCT2300.0128.502881
CCAGGCT1300.0127.5385061
ACAGGCT850.0127.2123261
GGCCTTA403.45608E-11126.152221
CTGCGGT5650.0125.035832
CCTGCGG2800.0123.577691
TTGGCTC10450.0121.409662
GGCCCTA301.14068825E-7120.1449661
GGCCTAA850.0118.73151
GGCCTAT501.8189894E-12115.339171
CTGGCTC9650.0113.546342
ACTGCGG3200.0112.635911
CAGCGGT3300.0111.407162
Produced by FastQC (version 0.11.5)