FastQCFastQC Report
Mon 22 Jul 2019
CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13781290
Sequences flagged as poor quality0
Sequence length150
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCCTG100.0072129457144.181061
GGCAATC100.0072129457144.181061
GGCCCTT100.0072129457144.181061
GCTCTGT100.0072129457144.181061
GCCCTTG202.1925262E-6144.181061
GCCCTGT253.8417056E-8144.181061
TGCTCAG100.0072129457144.181061
GACCTGT100.0072129457144.181061
GGCCTAC202.1925262E-6144.181061
AGGCTCC100.007241028143.993793
CTTGGCT2100.0140.748181
CCTGGCT2450.0138.296131
CCTGCGG3150.0132.738131
ACTGGCT1750.0131.82271
GCTGGCT900.0128.160951
CATGCAG403.45608E-11126.158431
CATGGCT1200.0126.1584241
CTGTGCT750.0124.956931
TCTGGCT2600.0124.772081
CTGTCAG351.9808795E-9123.583771
Produced by FastQC (version 0.11.5)