FastQCFastQC Report
Mon 22 Jul 2019
8C_26psu_2_S10_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename8C_26psu_2_S10_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18482577
Sequences flagged as poor quality0
Sequence length150
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCCTG100.007207634144.216741
GGCCATC151.2571854E-4144.216741
GCCCTGG100.007207634144.216741
CTGTGCC100.007207634144.216741
TGGCCCT100.0072410237143.993943
CCTGGCT2850.0136.626371
CCTGCGG4150.0135.528981
CATGGCT1650.0135.476321
GCCCTGT800.0135.203191
CTGGGCT700.0133.915541
CTTGGCT2400.0129.194151
GCTGGCT1300.0127.576341
TCTGGCT2750.0123.239761
CCAGGCT1750.0119.4938661
GGCCTAA1150.0119.135571
GGCCAAT550.0117.995511
GCCAGCT550.0117.995511
GGCCTAT800.0117.1760941
CTAGGCT1450.0114.3787841
CTGGCTC10300.0112.713082
Produced by FastQC (version 0.11.5)