Writing bisulfite genomes out into a single MFA (multi FastA) file Bisulfite Genome Indexer version v0.19.0 (last modified 07 November 2016) Step I - Prepare genome folders - completed Step II - Genome bisulfite conversions - completed Bismark Genome Preparation - Step III: Launching the Bowtie 2 indexer Preparing indexing of CT converted genome in /gscratch/srlab/strigg/data/Ssalar/GENOMES/chr1-29MT/Bisulfite_Genome/CT_conversion/ Preparing indexing of GA converted genome in /gscratch/srlab/strigg/data/Ssalar/GENOMES/chr1-29MT/Bisulfite_Genome/GA_conversion/ Building a SMALL index Building a SMALL index