[2020-07-16 12:57:12,719] multiqc [DEBUG ] No MultiQC config found: /Users/strigg/anaconda3/lib/python3.6/site-packages/multiqc_config.yaml [2020-07-16 12:57:12,719] multiqc [DEBUG ] No MultiQC config found: /Users/strigg/.multiqc_config.yaml [2020-07-16 12:57:12,720] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-07-16 12:57:12,721] multiqc [DEBUG ] Command used: /Users/strigg/anaconda3/bin/multiqc /Volumes/web/seashell/bu-mox/scrubbed/032120-fds/ /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/TG_FASTQS /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/multiqc_data /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/multiqc_report.html /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/readme.txt /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/slurm-2386816.out -x C* -o /Volumes/web/metacarcinus/Pgenerosa/analyses/20200716 [2020-07-16 12:57:14,187] multiqc [WARNING] MultiQC Version v1.9 now available! [2020-07-16 12:57:14,188] multiqc [INFO ] This is MultiQC v1.8 [2020-07-16 12:57:14,188] multiqc [DEBUG ] Command : /Users/strigg/anaconda3/bin/multiqc /Volumes/web/seashell/bu-mox/scrubbed/032120-fds/ /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/TG_FASTQS /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/multiqc_data /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/multiqc_report.html /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/readme.txt /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/slurm-2386816.out -x C* -o /Volumes/web/metacarcinus/Pgenerosa/analyses/20200716 [2020-07-16 12:57:14,188] multiqc [DEBUG ] Working dir : /Volumes/web/metacarcinus/Pgenerosa/analyses/20200716 [2020-07-16 12:57:14,188] multiqc [INFO ] Template : default [2020-07-16 12:57:14,188] multiqc [DEBUG ] Running Python 3.6.8 |Anaconda, Inc.| (default, Dec 29 2018, 19:04:46) [GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] [2020-07-16 12:57:14,188] multiqc [DEBUG ] Ignoring files, directories and paths that match: C* [2020-07-16 12:57:14,188] multiqc [INFO ] Searching : /Volumes/web/seashell/bu-mox/scrubbed/032120-fds [2020-07-16 12:57:14,188] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/TG_FASTQS [2020-07-16 12:57:14,188] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/multiqc_data [2020-07-16 12:57:14,189] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/multiqc_report.html [2020-07-16 12:57:14,189] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/readme.txt [2020-07-16 12:57:14,189] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Pgenerosa/analyses/20200320/slurm-2386816.out [2020-07-16 12:57:14,189] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-07-16 12:57:14,190] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs [2020-07-16 12:57:14,995] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: multiqc_data [2020-07-16 12:57:15,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:57:15,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:15,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:15,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:15,016] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 12:57:15,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:15,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:15,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 12:57:15,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:15,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:15,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:15,399] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:15,399] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:15,399] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:15,399] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:15,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.tab [2020-07-16 12:57:23,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 12:57:23,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:23,324] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 12:57:23,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,780] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,780] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,781] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:23,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.tab [2020-07-16 12:57:36,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:36,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:57:36,997] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 12:57:36,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:37,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:57:37,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:37,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 12:57:37,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:57:37,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,434] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,434] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,434] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,435] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:37,435] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.bedgraph [2020-07-16 12:57:55,500] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:55,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:57:55,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:57:55,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:57:55,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:57:55,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:57:55,954] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.tab [2020-07-16 12:58:15,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:58:15,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,897] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:15,898] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.tab [2020-07-16 12:58:28,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,518] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,518] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,518] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,518] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,519] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:28,519] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-184_S18_L003_10x.bedgraph [2020-07-16 12:58:40,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 12:58:40,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:58:40,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:58:40,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:58:40,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,753] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,753] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,753] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,754] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:40,754] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.tab [2020-07-16 12:58:55,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 12:58:55,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:58:55,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:58:55,918] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:58:55,945] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.bedgraph [2020-07-16 12:59:12,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:59:12,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:12,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 12:59:12,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:12,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 12:59:12,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 12:59:12,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:12,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:59:12,947] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 12:59:12,947] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:59:12,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:59:12,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 12:59:12,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:12,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:13,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 12:59:13,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:13,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:13,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:13,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:13,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:13,505] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.tab [2020-07-16 12:59:29,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 12:59:29,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:29,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2.fq.gz_G_to_A.fastq [2020-07-16 12:59:30,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,119] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,120] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,120] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,120] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,120] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:30,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-153_S4_L002_10x.bedgraph [2020-07-16 12:59:45,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:45,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:45,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:45,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 12:59:45,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:45,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:45,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:45,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:45,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:45,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:46,092] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.bedgraph [2020-07-16 12:59:52,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:52,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:52,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 12:59:52,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:52,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 12:59:52,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:52,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:52,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 12:59:52,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 12:59:53,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 12:59:53,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 12:59:53,281] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 12:59:53,281] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 12:59:53,281] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 12:59:53,281] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 12:59:53,419] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.tab [2020-07-16 13:00:00,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:00,740] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:00,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2020-07-16 13:00:00,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:00,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:00,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:00:00,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:01,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:01,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:01,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:01,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:01,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:01,246] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:01,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.bedgraph [2020-07-16 13:00:12,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:12,238] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-187_S20_L003_10x.bedgraph [2020-07-16 13:00:31,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:31,337] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:00:31,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:31,782] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.tab [2020-07-16 13:00:46,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:00:46,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:00:47,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,210] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,210] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,210] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,211] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,211] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:00:47,211] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.tab [2020-07-16 13:01:00,849] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:00,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:00,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:00,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:00,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:01:00,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:01:01,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:01,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:01,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:01,100] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:01,100] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:01,100] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:01,182] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.tab [2020-07-16 13:01:06,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:06,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:06,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:01:07,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,490] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:07,490] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.tab [2020-07-16 13:01:26,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:26,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:26,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:01:26,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:01:26,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:26,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.bedgraph [2020-07-16 13:01:40,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:01:40,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:40,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2.fq.gz_G_to_A.fastq [2020-07-16 13:01:40,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:40,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:01:40,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:40,350] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:01:40,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:40,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,811] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,811] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,811] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,811] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:40,811] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-154_S5_L002_10x.bedgraph [2020-07-16 13:01:55,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:01:55,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:01:55,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,564] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,565] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:01:55,565] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.bedgraph [2020-07-16 13:02:10,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:02:10,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:02:10,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:02:10,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:02:10,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,205] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:10,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:10,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:10,667] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:10,667] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:10,667] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:10,667] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:10,777] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-159_S6_L002_10x.bedgraph [2020-07-16 13:02:18,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,809] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:18,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.tab [2020-07-16 13:02:34,739] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:02:34,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:02:34,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:02:34,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,762] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:02:34,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1.fq.gz_C_to_T.fastq [2020-07-16 13:02:34,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:02:34,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:02:34,801] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:02:34,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:34,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:02:35,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:35,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:35,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:35,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:35,266] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:35,266] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:35,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.tab [2020-07-16 13:02:41,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:02:41,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:41,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:02:42,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:42,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:42,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:42,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:42,428] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:42,428] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:42,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.bedgraph [2020-07-16 13:02:52,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:02:52,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:02:52,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:02:52,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:02:52,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:02:52,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:02:52,488] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.tab [2020-07-16 13:03:00,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:00,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:03:00,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:00,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:00,300] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:00,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,941] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,942] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:00,942] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-170_S13_L002_10x.bedgraph [2020-07-16 13:03:16,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:03:16,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:03:16,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:03:16,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:03:16,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:16,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:03:16,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:03:16,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:03:16,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,507] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,507] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,508] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,508] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,508] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:16,508] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.tab [2020-07-16 13:03:30,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:30,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:03:30,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:03:30,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:30,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:03:30,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,681] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,682] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:30,682] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-151_S2_L002_10x.tab [2020-07-16 13:03:49,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:03:50,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,525] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,525] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:03:50,525] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-103_S27_L005_10x.bedgraph [2020-07-16 13:04:10,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:04:10,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:11,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:11,033] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:11,033] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:11,033] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:11,033] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:11,127] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.tab [2020-07-16 13:04:17,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:04:17,568] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:04:17,570] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:04:17,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:04:17,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:04:17,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:04:17,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,611] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:17,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:04:17,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:04:18,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:18,282] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-193_S22_L003_10x.bedgraph [2020-07-16 13:04:35,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:35,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:35,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:04:35,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:35,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:04:35,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:36,375] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:36,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.bedgraph [2020-07-16 13:04:50,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:04:50,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:50,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:50,145] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:50,146] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:04:50,652] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:04:50,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-208_S28_L004_10x.bedgraph [2020-07-16 13:05:09,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:09,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,145] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:09,146] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,151] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,153] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:09,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:09,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:09,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:09,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:09,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:09,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:09,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:09,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:09,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:09,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:09,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:09,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:09,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:09,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:09,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:09,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:09,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:09,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:09,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:09,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:09,836] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-221_S33_L004_10x.bedgraph [2020-07-16 13:05:17,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:17,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:17,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:17,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:17,898] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.tab [2020-07-16 13:05:33,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:33,038] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:33,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:33,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:33,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:33,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,052] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:33,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1.fq.gz_C_to_T.fastq [2020-07-16 13:05:33,103] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:33,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:33,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:33,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:33,514] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:33,514] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:33,514] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:33,514] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:33,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-205_S26_L004_10x.bedgraph [2020-07-16 13:05:40,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:40,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:40,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:40,568] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:40,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:40,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:40,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:40,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,596] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:40,611] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,616] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:40,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:40,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:05:40,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:05:40,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:41,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:41,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:41,126] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:41,126] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:41,126] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:41,126] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:41,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.bedgraph [2020-07-16 13:05:44,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:44,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:44,834] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:44,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:44,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:44,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:44,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:44,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:44,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:44,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:44,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:05:44,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:05:44,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:05:44,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:45,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,442] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,442] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,442] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:45,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-230_S37_L004_10x.bedgraph [2020-07-16 13:05:59,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:05:59,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:00,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,252] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,252] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,252] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,253] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,253] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:00,253] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-175_S14_L003_10x.bedgraph [2020-07-16 13:06:20,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:06:20,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:20,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:20,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:06:20,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:20,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:20,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:20,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:20,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:20,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:20,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.bedgraph [2020-07-16 13:06:27,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:06:27,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:06:27,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:27,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:06:27,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:06:27,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:06:27,388] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:27,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:27,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:27,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,995] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:27,996] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.bedgraph [2020-07-16 13:06:44,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:06:44,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:06:44,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:06:44,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:06:44,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:06:44,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:06:44,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:06:44,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:06:44,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:06:44,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:44,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:06:45,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 03-bismark.sh [2020-07-16 13:06:45,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:06:45,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:06:45,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:45,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:06:45,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:06:45,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:06:45,914] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-206_S27_L004_10x.tab [2020-07-16 13:07:00,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:07:00,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:00,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:00,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:00,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:00,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:00,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:00,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:00,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:00,649] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:00,649] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:00,649] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:00,649] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:00,797] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.bedgraph [2020-07-16 13:07:10,610] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:07:10,613] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:10,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:10,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:10,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:10,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:07:10,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:07:10,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:07:10,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:07:10,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:10,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:11,056] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:11,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:11,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:11,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:11,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:11,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:11,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-199_S24_L003_10x.tab [2020-07-16 13:07:18,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:07:18,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:18,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:18,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,820] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,820] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,820] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,820] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,820] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:18,820] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-41_S38_L005_10x.bedgraph [2020-07-16 13:07:31,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:31,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:31,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:31,773] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:31,773] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:31,774] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:31,774] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:31,920] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-188_S21_L003_10x.tab [2020-07-16 13:07:41,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:07:41,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:41,771] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:07:41,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:41,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:41,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:07:41,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:41,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:07:41,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:41,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:07:41,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:41,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:07:42,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,325] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,325] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,325] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,326] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:42,326] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.tab [2020-07-16 13:07:54,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:07:54,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:07:54,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:07:54,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:07:54,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:07:54,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:07:54,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:07:54,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-226_S34_L004_10x.bedgraph [2020-07-16 13:08:00,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:00,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:00,637] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-162_S9_L002_10x.tab [2020-07-16 13:08:11,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,350] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:11,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:11,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:08:11,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:08:11,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:08:11,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:08:11,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:08:11,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:11,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,908] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,908] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,908] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,909] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,909] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:11,909] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-229_S36_L004_10x.bedgraph [2020-07-16 13:08:23,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:08:23,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:08:23,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1.fq.gz_C_to_T.fastq [2020-07-16 13:08:23,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:08:23,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:08:23,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:08:23,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,324] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:23,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:23,917] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-200_S25_L003_10x.tab [2020-07-16 13:08:41,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:41,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:41,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:42,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:42,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:42,213] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:42,213] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:42,213] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:42,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:42,314] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-220_S32_L004_10x.tab [2020-07-16 13:08:49,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:49,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:49,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:49,277] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:49,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:49,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:49,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:08:49,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:08:49,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:08:49,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:49,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:49,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:08:49,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:08:49,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:49,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:49,787] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:49,787] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:49,787] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:49,787] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:49,886] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-227_S35_L004_10x.bedgraph [2020-07-16 13:08:56,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:08:56,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:08:56,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:08:56,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.txt [2020-07-16 13:08:56,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.txt [2020-07-16 13:08:56,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:56,757] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:08:57,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,318] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:08:57,319] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-143_S37_L005_10x.bedgraph [2020-07-16 13:09:16,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:16,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-193_S22_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:16,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:16,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-182_S17_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:16,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:16,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:16,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,964] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:16,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:16,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:16,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:16,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,980] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,983] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:16,985] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:09:16,989] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:17,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,012] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:09:17,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:17,025] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:17,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:09:17,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:17,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:17,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:17,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:17,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:17,403] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:17,403] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:17,403] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:17,403] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:17,463] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: slurm-2417730.out [2020-07-16 13:09:21,616] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:21,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:09:21,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:21,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:21,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:21,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:21,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:21,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:21,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:21,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:22,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,253] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,253] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,253] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,253] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,253] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:22,253] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-215_S31_L004_10x.bedgraph [2020-07-16 13:09:36,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-194_S23_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:36,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:09:36,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:36,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:36,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:36,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:36,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:36,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:36,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:09:36,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:36,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,736] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,737] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:36,737] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-169_S12_L002_10x.bedgraph [2020-07-16 13:09:49,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:49,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:49,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:09:49,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:49,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:49,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:49,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-07-16 13:09:49,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:09:49,386] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:49,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:49,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OB_EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:49,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:49,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:49,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:49,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:49,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:49,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:49,965] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-44_S41_L005_10x.bedgraph [2020-07-16 13:09:56,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:56,078] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-184_S18_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:09:56,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:09:56,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,628] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,629] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,629] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,629] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,629] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:09:56,629] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-168_S11_L002_10x.tab [2020-07-16 13:10:11,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:11,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:10:11,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:10:11,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:11,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:10:11,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:11,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:11,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:12,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:12,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:12,300] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:12,300] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:12,300] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:12,300] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:12,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-185_S19_L003_10x.tab [2020-07-16 13:10:16,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:16,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:10:16,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:16,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:16,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:16,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:10:16,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:16,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:16,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-185_S19_L003_5x.tab [2020-07-16 13:10:30,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:30,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:30,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:30,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:31,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,522] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:31,522] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-167_S10_L002_10x.tab [2020-07-16 13:10:49,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:49,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:10:49,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-188_S21_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:10:49,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:10:49,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:10:49,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,337] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OB_EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:49,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:49,349] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:10:49,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:10:49,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:10:49,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-185_S19_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-07-16 13:10:49,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OT_EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHG_OB_EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:10:49,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:10:49,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:10:49,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:10:49,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:10:49,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:10:49,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:10:49,920] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-161_S8_L002_10x.tab [2020-07-16 13:11:00,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:11:00,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,645] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,645] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,646] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,646] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,646] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:00,646] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: EPI-43_S40_L005_10x.bedgraph [2020-07-16 13:11:12,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-07-16 13:11:12,893] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:11:12,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_bismark_bt2_PE_report.html [2020-07-16 13:11:12,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.bam [2020-07-16 13:11:12,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CpG_OT_EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:11:12,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CHH_OT_EPI-199_S24_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.txt [2020-07-16 13:11:12,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:12,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:12,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:12,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:13,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-151_S2_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:13,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-151_S2_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:13,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:13,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-120_S32_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:13,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-120_S32_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:14,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-113_S30_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:14,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-113_S30_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:14,277] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:14,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:14,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:14,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-160_S7_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:14,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-160_S7_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:14,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:14,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:14,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:14,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-162_S9_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:14,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-162_S9_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:15,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:15,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-205_S26_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:15,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-205_S26_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:15,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-44_S41_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:15,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-44_S41_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:15,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:15,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-152_S3_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:15,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-152_S3_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-221_S33_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-221_S33_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:16,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-194_S23_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-194_S23_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-127_S33_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-127_S33_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:16,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:17,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-227_S35_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:17,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-227_S35_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:17,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-193_S22_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:17,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-193_S22_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:17,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-161_S8_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:17,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-161_S8_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:18,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:18,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-214_S30_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:18,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-214_S30_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:18,311] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:18,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:18,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-143_S37_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:18,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-143_S37_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:18,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:18,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:18,810] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-226_S34_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:18,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-226_S34_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:19,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-170_S13_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:19,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-170_S13_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:19,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-167_S10_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:19,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-167_S10_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:19,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:19,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:19,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:19,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:19,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-104_S28_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:19,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-104_S28_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:20,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-181_S16_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:20,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-181_S16_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:20,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:20,151] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:20,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-103_S27_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:20,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-103_S27_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:20,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:20,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:20,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:20,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-135_S35_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:20,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-135_S35_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:21,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-143_S37_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:21,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-143_S37_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:21,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-230_S37_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:21,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-230_S37_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:21,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-159_S6_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:21,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-159_S6_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:22,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:22,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-200_S25_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:22,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-200_S25_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:22,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-151_S2_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:22,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-151_S2_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:22,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-128_S34_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:22,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-128_S34_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:23,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-185_S19_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:23,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-185_S19_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:23,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:23,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-113_S30_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:23,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-113_S30_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:23,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-188_S21_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:23,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-188_S21_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:24,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-43_S40_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:24,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-43_S40_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:24,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:24,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-145_S38_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:24,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-145_S38_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:24,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-154_S5_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:24,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-154_S5_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:25,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-227_S35_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:25,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-227_S35_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:25,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:25,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:25,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:25,413] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-162_S9_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:25,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-162_S9_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:25,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-41_S38_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:25,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-41_S38_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:26,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:26,078] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:26,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-153_S4_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-153_S4_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-161_S8_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-161_S8_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:26,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:26,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:26,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-168_S11_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-168_S11_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:26,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:26,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-160_S7_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-160_S7_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:27,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-167_S10_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-167_S10_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-119_S31_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-119_S31_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:27,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:27,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:27,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:27,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-136_S36_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:27,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-136_S36_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:28,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:28,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:28,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:28,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-221_S33_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:28,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-221_S33_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:28,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-206_S27_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:28,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-206_S27_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:28,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-128_S34_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:28,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-128_S34_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:29,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-199_S24_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:29,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-199_S24_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:29,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:29,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-182_S17_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:29,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-182_S17_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:29,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-182_S17_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:29,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-182_S17_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:30,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:30,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-185_S19_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:30,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-185_S19_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:30,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-215_S31_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:30,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-215_S31_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:30,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-119_S31_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:30,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-119_S31_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:31,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-42_S39_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:31,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-42_S39_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:31,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-176_S15_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:31,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-176_S15_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:31,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-229_S36_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:31,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-229_S36_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:32,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-152_S3_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:32,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-152_S3_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:32,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:32,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-184_S18_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:32,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-184_S18_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:32,853] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:32,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-208_S28_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:32,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-208_S28_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:33,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:33,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:33,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:33,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:33,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:33,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-205_S26_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:33,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-205_S26_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:33,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-153_S4_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:33,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-153_S4_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:33,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:33,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:33,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:33,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:33,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-176_S15_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:33,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-176_S15_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:34,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-188_S21_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:34,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-188_S21_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:34,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:34,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:34,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-226_S34_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:34,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-226_S34_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:34,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-120_S32_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:34,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-120_S32_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:35,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:35,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-215_S31_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:35,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-215_S31_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:35,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-230_S37_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:35,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-230_S37_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:35,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:35,834] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:35,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:35,837] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:35,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:35,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:35,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-169_S12_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:35,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-169_S12_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:36,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-187_S20_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:36,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-187_S20_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:36,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:36,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:36,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-127_S33_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:36,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-127_S33_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:36,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-181_S16_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:36,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-181_S16_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:37,091] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:37,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-44_S41_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:37,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-44_S41_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:37,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-168_S11_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:37,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-168_S11_L002_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:37,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-111_S29_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:37,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-111_S29_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:38,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:38,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:38,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-194_S23_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:38,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-194_S23_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:38,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:38,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:38,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:38,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-111_S29_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:38,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-111_S29_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:38,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:38,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-200_S25_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:38,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-200_S25_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:39,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-199_S24_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:39,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-199_S24_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:39,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-103_S27_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:39,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-103_S27_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:39,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:39,710] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_val_2.fq.gz [2020-07-16 13:11:39,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-136_S36_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:39,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-136_S36_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:40,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-214_S30_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:40,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-214_S30_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:40,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:40,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:40,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-175_S14_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:40,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-175_S14_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:40,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:40,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-220_S32_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:40,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-220_S32_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:41,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:41,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:41,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-193_S22_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:41,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-193_S22_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:41,583] multiqc [DEBUG ] File ignored by 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EPI-154_S5_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:42,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-170_S13_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:42,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-170_S13_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:42,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1.fq.gz [2020-07-16 13:11:42,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:42,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-220_S32_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:42,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-220_S32_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:42,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:42,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:42,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_val_2.fq.gz [2020-07-16 13:11:42,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_val_2.fq.gz [2020-07-16 13:11:42,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1.fq.gz [2020-07-16 13:11:42,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-41_S38_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:42,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-41_S38_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:42,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-208_S28_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:43,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-208_S28_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:43,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1.fq.gz [2020-07-16 13:11:43,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-154_S5_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:43,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-154_S5_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:43,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-145_S38_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:43,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-145_S38_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:44,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-104_S28_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:44,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-104_S28_L005_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:44,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-184_S18_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:44,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-184_S18_L003_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:44,912] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-169_S12_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:44,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-169_S12_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:45,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-187_S20_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:45,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-187_S20_L003_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:45,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-229_S36_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:45,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-229_S36_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:45,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-43_S40_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:45,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-43_S40_L005_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:46,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-209_S29_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:46,198] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-209_S29_L004_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:46,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_val_2.fq.gz [2020-07-16 13:11:46,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-209_S29_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:47,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-209_S29_L004_R2_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:47,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1.fq.gz [2020-07-16 13:11:47,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: EPI-159_S6_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:47,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: EPI-159_S6_L002_R1_001.fastq.gz_trimming_report.txt [2020-07-16 13:11:47,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,700] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,757] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,762] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,805] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,889] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,890] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,917] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_val_2_fastqc.html [2020-07-16 13:11:47,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_fastqc.html [2020-07-16 13:11:47,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report.html [2020-07-16 13:11:48,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: readme.txt [2020-07-16 13:11:48,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: readme.txt [2020-07-16 13:11:49,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2386816.out [2020-07-16 13:11:49,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2386816.out [2020-07-16 13:11:49,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: slurm-2386816.out [2020-07-16 13:11:49,248] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: slurm-2386816.out [2020-07-16 13:11:49,248] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: slurm-2386816.out [2020-07-16 13:11:49,248] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: slurm-2386816.out [2020-07-16 13:11:53,763] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.0.3 [2020-07-16 13:11:53,778] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.0.3 [2020-07-16 13:11:53,793] multiqc [DEBUG ] No samples found: custom_content [2020-07-16 13:11:53,835] multiqc [DEBUG ] No samples found: conpair [2020-07-16 13:11:53,868] multiqc [DEBUG ] No samples found: peddy [2020-07-16 13:11:53,902] multiqc [DEBUG ] No samples found: methylQA [2020-07-16 13:11:53,915] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-07-16 13:11:53,970] multiqc [DEBUG ] No samples found: qualimap [2020-07-16 13:11:53,984] multiqc [DEBUG ] No samples found: preseq [2020-07-16 13:11:54,005] multiqc [DEBUG ] No samples found: quast [2020-07-16 13:11:54,018] multiqc [DEBUG ] No samples found: qorts [2020-07-16 13:11:54,067] multiqc [DEBUG ] No samples found: rna_seqc [2020-07-16 13:11:54,075] multiqc [DEBUG ] No samples found: rsem [2020-07-16 13:11:54,127] multiqc [DEBUG ] No samples found: rseqc [2020-07-16 13:11:54,134] multiqc [DEBUG ] No samples found: busco [2020-07-16 13:11:54,151] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-07-16 13:11:54,170] multiqc [DEBUG ] No samples found: disambiguate [2020-07-16 13:11:54,183] multiqc [DEBUG ] No samples found: supernova [2020-07-16 13:11:54,212] multiqc [DEBUG ] No samples found: deeptools [2020-07-16 13:11:54,232] multiqc [DEBUG ] No samples found: sargasso [2020-07-16 13:11:54,239] multiqc [DEBUG ] No samples found: verifybamid [2020-07-16 13:11:54,246] multiqc [DEBUG ] No samples found: mirtrace [2020-07-16 13:11:54,266] multiqc [DEBUG ] No samples found: happy [2020-07-16 13:11:54,287] multiqc [DEBUG ] No samples found: homer [2020-07-16 13:11:54,301] multiqc [DEBUG ] No samples found: macs2 [2020-07-16 13:11:54,310] multiqc [DEBUG ] No samples found: theta2 [2020-07-16 13:11:54,318] multiqc [DEBUG ] No samples found: snpeff [2020-07-16 13:11:54,333] multiqc [DEBUG ] No samples found: gatk [2020-07-16 13:11:54,349] multiqc [DEBUG ] No samples found: htseq [2020-07-16 13:11:54,377] multiqc [DEBUG ] No samples found: bcftools [2020-07-16 13:11:54,394] multiqc [DEBUG ] No samples found: featureCounts [2020-07-16 13:11:54,402] multiqc [DEBUG ] No samples found: fgbio [2020-07-16 13:11:54,415] multiqc [DEBUG ] No samples found: dedup [2020-07-16 13:11:54,422] multiqc [DEBUG ] No samples found: damageprofiler [2020-07-16 13:11:54,512] multiqc [DEBUG ] No samples found: biobambam2 [2020-07-16 13:11:54,527] multiqc [DEBUG ] No samples found: mtnucratio [2020-07-16 13:11:54,532] multiqc [DEBUG ] No samples found: picard [2020-07-16 13:11:54,555] multiqc [DEBUG ] No samples found: prokka [2020-07-16 13:11:54,579] multiqc [DEBUG ] No samples found: samblaster [2020-07-16 13:11:54,605] multiqc [DEBUG ] No samples found: samtools [2020-07-16 13:11:54,622] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-07-16 13:11:54,639] multiqc [DEBUG ] No samples found: bamtools [2020-07-16 13:11:54,645] multiqc [DEBUG ] No samples found: jellyfish [2020-07-16 13:11:54,681] multiqc [DEBUG ] No samples found: vcftools [2020-07-16 13:11:54,709] multiqc [DEBUG ] No samples found: longranger [2020-07-16 13:11:54,724] multiqc [DEBUG ] No samples found: stacks [2020-07-16 13:11:54,828] multiqc [DEBUG ] No samples found: bbmap [2020-07-16 13:11:57,836] multiqc.modules.bismark.bismark [INFO ] Found 52 bismark alignment reports [2020-07-16 13:11:57,842] multiqc.modules.bismark.bismark [INFO ] Found 52 bismark dedup reports [2020-07-16 13:11:57,850] multiqc.modules.bismark.bismark [INFO ] Found 52 bismark methextract reports [2020-07-16 13:11:57,952] multiqc [DEBUG ] No samples found: biscuit [2020-07-16 13:11:57,982] multiqc [DEBUG ] No samples found: hicexplorer [2020-07-16 13:11:58,005] multiqc [DEBUG ] No samples found: hicup [2020-07-16 13:11:58,034] multiqc [DEBUG ] No samples found: hicpro [2020-07-16 13:11:58,058] multiqc [DEBUG ] No samples found: salmon [2020-07-16 13:11:58,065] multiqc [DEBUG ] No samples found: kallisto [2020-07-16 13:11:58,086] multiqc [DEBUG ] No samples found: slamdunk [2020-07-16 13:11:58,104] multiqc [DEBUG ] No samples found: star [2020-07-16 13:11:58,117] multiqc [DEBUG ] No samples found: hisat2 [2020-07-16 13:11:58,133] multiqc [DEBUG ] No samples found: tophat [2020-07-16 13:11:58,152] multiqc [DEBUG ] No samples found: bowtie2 [2020-07-16 13:11:58,166] multiqc [DEBUG ] No samples found: bowtie1 [2020-07-16 13:11:58,183] multiqc [DEBUG ] No samples found: kat [2020-07-16 13:11:58,198] multiqc [DEBUG ] No samples found: leehom [2020-07-16 13:11:58,205] multiqc [DEBUG ] No samples found: adapterRemoval [2020-07-16 13:11:58,224] multiqc [DEBUG ] No samples found: clipandmerge [2020-07-16 13:11:58,913] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R1_001 [2020-07-16 13:11:58,917] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R2_001 [2020-07-16 13:11:58,921] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R1_001 [2020-07-16 13:11:58,923] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R2_001 [2020-07-16 13:11:58,928] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R1_001 [2020-07-16 13:11:58,931] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R2_001 [2020-07-16 13:11:58,934] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R1_001 [2020-07-16 13:11:58,939] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R2_001 [2020-07-16 13:11:58,942] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R1_001 [2020-07-16 13:11:58,944] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R2_001 [2020-07-16 13:11:58,947] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R1_001 [2020-07-16 13:11:58,950] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R2_001 [2020-07-16 13:11:58,952] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R1_001 [2020-07-16 13:11:58,955] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R2_001 [2020-07-16 13:11:58,961] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R1_001 [2020-07-16 13:11:58,964] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R2_001 [2020-07-16 13:11:58,967] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R1_001 [2020-07-16 13:11:58,969] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R2_001 [2020-07-16 13:11:58,972] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R1_001 [2020-07-16 13:11:58,974] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R2_001 [2020-07-16 13:11:58,977] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R1_001 [2020-07-16 13:11:58,979] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R2_001 [2020-07-16 13:11:58,982] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R1_001 [2020-07-16 13:11:58,985] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R2_001 [2020-07-16 13:11:58,988] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R1_001 [2020-07-16 13:11:58,990] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R2_001 [2020-07-16 13:11:58,993] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R1_001 [2020-07-16 13:11:58,995] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R2_001 [2020-07-16 13:11:59,003] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R1_001 [2020-07-16 13:11:59,005] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R2_001 [2020-07-16 13:11:59,008] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R1_001 [2020-07-16 13:11:59,011] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R2_001 [2020-07-16 13:11:59,014] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R1_001 [2020-07-16 13:11:59,016] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R2_001 [2020-07-16 13:11:59,019] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R1_001 [2020-07-16 13:11:59,021] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R2_001 [2020-07-16 13:11:59,024] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R1_001 [2020-07-16 13:11:59,027] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R2_001 [2020-07-16 13:11:59,030] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R1_001 [2020-07-16 13:11:59,032] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R2_001 [2020-07-16 13:11:59,035] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R1_001 [2020-07-16 13:11:59,037] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R2_001 [2020-07-16 13:11:59,040] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R1_001 [2020-07-16 13:11:59,042] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R2_001 [2020-07-16 13:11:59,045] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R1_001 [2020-07-16 13:11:59,048] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R2_001 [2020-07-16 13:11:59,051] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R1_001 [2020-07-16 13:11:59,053] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R2_001 [2020-07-16 13:11:59,056] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R1_001 [2020-07-16 13:11:59,058] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R2_001 [2020-07-16 13:11:59,061] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R1_001 [2020-07-16 13:11:59,064] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R2_001 [2020-07-16 13:11:59,067] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R1_001 [2020-07-16 13:11:59,069] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R2_001 [2020-07-16 13:11:59,072] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R1_001 [2020-07-16 13:11:59,074] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R2_001 [2020-07-16 13:11:59,084] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R1_001 [2020-07-16 13:11:59,087] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R2_001 [2020-07-16 13:11:59,090] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R1_001 [2020-07-16 13:11:59,092] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R2_001 [2020-07-16 13:11:59,095] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R1_001 [2020-07-16 13:11:59,097] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R2_001 [2020-07-16 13:11:59,100] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R1_001 [2020-07-16 13:11:59,103] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R2_001 [2020-07-16 13:11:59,106] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R1_001 [2020-07-16 13:11:59,108] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R2_001 [2020-07-16 13:11:59,111] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R1_001 [2020-07-16 13:11:59,113] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R2_001 [2020-07-16 13:11:59,116] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R1_001 [2020-07-16 13:11:59,118] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R2_001 [2020-07-16 13:11:59,121] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R1_001 [2020-07-16 13:11:59,124] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R2_001 [2020-07-16 13:11:59,127] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R1_001 [2020-07-16 13:11:59,129] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R2_001 [2020-07-16 13:11:59,132] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R1_001 [2020-07-16 13:11:59,134] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R2_001 [2020-07-16 13:11:59,137] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R1_001 [2020-07-16 13:11:59,140] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R2_001 [2020-07-16 13:11:59,143] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R1_001 [2020-07-16 13:11:59,145] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R2_001 [2020-07-16 13:11:59,148] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R1_001 [2020-07-16 13:11:59,150] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R2_001 [2020-07-16 13:11:59,153] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R1_001 [2020-07-16 13:11:59,156] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R2_001 [2020-07-16 13:11:59,159] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R1_001 [2020-07-16 13:11:59,161] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R2_001 [2020-07-16 13:11:59,164] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R1_001 [2020-07-16 13:11:59,166] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R2_001 [2020-07-16 13:11:59,169] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R1_001 [2020-07-16 13:11:59,171] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R2_001 [2020-07-16 13:11:59,174] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R1_001 [2020-07-16 13:11:59,177] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R2_001 [2020-07-16 13:11:59,180] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R1_001 [2020-07-16 13:11:59,182] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R2_001 [2020-07-16 13:11:59,185] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R1_001 [2020-07-16 13:11:59,187] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R2_001 [2020-07-16 13:11:59,190] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R1_001 [2020-07-16 13:11:59,192] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R2_001 [2020-07-16 13:11:59,195] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R1_001 [2020-07-16 13:11:59,198] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R2_001 [2020-07-16 13:11:59,201] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R1_001 [2020-07-16 13:11:59,203] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R2_001 [2020-07-16 13:11:59,206] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R1_001 [2020-07-16 13:11:59,208] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R2_001 [2020-07-16 13:11:59,213] multiqc.modules.cutadapt.cutadapt [INFO ] Found 104 reports [2020-07-16 13:12:02,097] multiqc [DEBUG ] No samples found: flexbar [2020-07-16 13:12:02,125] multiqc [DEBUG ] No samples found: trimmomatic [2020-07-16 13:12:02,151] multiqc [DEBUG ] No samples found: skewer [2020-07-16 13:12:02,187] multiqc [DEBUG ] No samples found: sortmerna [2020-07-16 13:12:02,215] multiqc [DEBUG ] No samples found: biobloomtools [2020-07-16 13:12:02,241] multiqc [DEBUG ] No samples found: fastq_screen [2020-07-16 13:12:02,264] multiqc [DEBUG ] No samples found: afterqc [2020-07-16 13:12:02,291] multiqc [DEBUG ] No samples found: fastp [2020-07-16 13:12:10,278] multiqc.modules.fastqc.fastqc [INFO ] Found 104 reports [2020-07-16 13:12:30,325] multiqc [DEBUG ] No samples found: minionqc [2020-07-16 13:12:30,333] multiqc [DEBUG ] No samples found: mosdepth [2020-07-16 13:12:30,353] multiqc [DEBUG ] No samples found: clusterflow [2020-07-16 13:12:30,375] multiqc [DEBUG ] No samples found: bcl2fastq [2020-07-16 13:12:30,385] multiqc [DEBUG ] No samples found: interop [2020-07-16 13:12:30,418] multiqc [DEBUG ] No samples found: flash [2020-07-16 13:12:30,448] multiqc [DEBUG ] No samples found: seqyclean [2020-07-16 13:12:30,948] multiqc [INFO ] Compressing plot data [2020-07-16 13:12:32,163] multiqc [INFO ] Report : multiqc_report.html [2020-07-16 13:12:32,164] multiqc [INFO ] Data : multiqc_data [2020-07-16 13:12:32,165] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_cutadapt_plot_Counts.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,176] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_cutadapt_plot_Obs_Exp.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,191] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,203] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,216] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,227] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,272] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,281] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,287] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,300] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,308] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_bismark_alignment.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,315] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_bismark_dedup.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,321] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_bismark_methextract.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,380] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_cutadapt.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,386] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_data.json' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,706] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_fastqc.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,714] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_general_stats.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,721] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:32,727] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmpx46kdrxs/multiqc_data/multiqc_sources.txt' to '/Volumes/web/metacarcinus/Pgenerosa/analyses/20200716/multiqc_data' [2020-07-16 13:12:33,283] multiqc [INFO ] MultiQC complete