/Users/ Shared/ hollie/ kaitlyn/ lhs3/ sam/ sean/ srlab/ steven/ strigg/ bash-3.2$ /Users/strigg/Desktop/20200415/20200415_DMRfind_proximTest.sh ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 25 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR25bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:51:06 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:51:14 2020 Begin Defining Windows Wed Apr 15 11:51:24 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 50 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR50bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:52:09 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:52:16 2020 Begin Defining Windows Wed Apr 15 11:52:27 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 100 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR100bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:53:11 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:53:19 2020 Begin Defining Windows Wed Apr 15 11:53:30 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 150 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR150bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:54:14 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:54:21 2020 Begin Defining Windows Wed Apr 15 11:54:32 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 200 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR200bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:55:16 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:55:23 2020 Begin Defining Windows Wed Apr 15 11:55:35 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 300 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR300bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:56:19 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:56:27 2020 Begin Defining Windows Wed Apr 15 11:56:38 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 500 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR500bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:57:22 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:57:30 2020 Begin Defining Windows Wed Apr 15 11:57:41 2020 ++ methylpy reidentify-DMR --input-rms-file /Users/strigg/Desktop/20200327/day10_AllpH_DMR250bp_cov5x_rms_results.tsv.gz --min-num-dms 3 --dmr-max-dist 1000 --output-file /Users/strigg/Desktop/20200415/day10_AllpH_DMR1000bp_cov5x_rms_results_recollapsed.tsv Begin FDR Correction Wed Apr 15 11:58:26 2020 m0 estimate for iteration 0: 1973483 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Wed Apr 15 11:58:34 2020 Begin Defining Windows Wed Apr 15 11:58:45 2020 bash-3.2$