[2020-03-20 19:36:07,324] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2020-03-20 19:36:07,324] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/strigg/.multiqc_config.yaml [2020-03-20 19:36:07,325] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-03-20 19:36:07,325] multiqc [DEBUG ] Command used: /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc /gscratch/scrubbed/strigg/analyses/20200320/TG_FASTQS/FastQC/. [2020-03-20 19:36:12,481] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2020-03-20 19:36:12,481] multiqc [INFO ] This is MultiQC v1.8 [2020-03-20 19:36:12,481] multiqc [DEBUG ] Command : /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc /gscratch/scrubbed/strigg/analyses/20200320/TG_FASTQS/FastQC/. [2020-03-20 19:36:12,482] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/strigg/analyses/20200320 [2020-03-20 19:36:12,482] multiqc [INFO ] Template : default [2020-03-20 19:36:12,482] multiqc [DEBUG ] Running Python 3.7.6 | packaged by conda-forge | (default, Mar 5 2020, 15:27:18) [GCC 7.3.0] [2020-03-20 19:36:12,482] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200320/TG_FASTQS/FastQC [2020-03-20 19:36:12,483] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-03-20 19:36:12,483] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpb4ropm2l [2020-03-20 19:36:13,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,251] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,256] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,256] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_val_2_fastqc.html [2020-03-20 19:36:13,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_fastqc.html [2020-03-20 19:36:13,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_val_2_fastqc.html [2020-03-20 19:36:22,341] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.5 [2020-03-20 19:36:22,373] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.5 [2020-03-20 19:36:22,419] multiqc [DEBUG ] No samples found: custom_content [2020-03-20 19:36:22,510] multiqc [DEBUG ] No samples found: conpair [2020-03-20 19:36:22,591] multiqc [DEBUG ] No samples found: peddy [2020-03-20 19:36:22,694] multiqc [DEBUG ] No samples found: methylQA [2020-03-20 19:36:22,783] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-03-20 19:36:22,917] multiqc [DEBUG ] No samples found: qualimap [2020-03-20 19:36:23,011] multiqc [DEBUG ] No samples found: preseq [2020-03-20 19:36:23,080] multiqc [DEBUG ] No samples found: quast [2020-03-20 19:36:23,200] multiqc [DEBUG ] No samples found: qorts [2020-03-20 19:36:23,267] multiqc [DEBUG ] No samples found: rna_seqc [2020-03-20 19:36:23,335] multiqc [DEBUG ] No samples found: rsem [2020-03-20 19:36:23,659] multiqc [DEBUG ] No samples found: rseqc [2020-03-20 19:36:23,719] multiqc [DEBUG ] No samples found: busco [2020-03-20 19:36:23,764] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-03-20 19:36:23,810] multiqc [DEBUG ] No samples found: disambiguate [2020-03-20 19:36:23,907] multiqc [DEBUG ] No samples found: supernova [2020-03-20 19:36:24,165] multiqc [DEBUG ] No samples found: deeptools [2020-03-20 19:36:24,237] multiqc [DEBUG ] No samples found: sargasso [2020-03-20 19:36:24,282] multiqc [DEBUG ] No samples found: verifybamid [2020-03-20 19:36:24,352] multiqc [DEBUG ] No samples found: mirtrace [2020-03-20 19:36:24,430] multiqc [DEBUG ] No samples found: happy [2020-03-20 19:36:24,499] multiqc [DEBUG ] No samples found: homer [2020-03-20 19:36:24,575] multiqc [DEBUG ] No samples found: macs2 [2020-03-20 19:36:24,638] multiqc [DEBUG ] No samples found: theta2 [2020-03-20 19:36:24,682] multiqc [DEBUG ] No samples found: snpeff [2020-03-20 19:36:24,848] multiqc [DEBUG ] No samples found: gatk [2020-03-20 19:36:24,877] multiqc [DEBUG ] No samples found: htseq [2020-03-20 19:36:24,945] multiqc [DEBUG ] No samples found: bcftools [2020-03-20 19:36:25,089] multiqc [DEBUG ] No samples found: featureCounts [2020-03-20 19:36:25,181] multiqc [DEBUG ] No samples found: fgbio [2020-03-20 19:36:25,211] multiqc [DEBUG ] No samples found: dedup [2020-03-20 19:36:25,293] multiqc [DEBUG ] No samples found: damageprofiler [2020-03-20 19:36:25,665] multiqc [DEBUG ] No samples found: biobambam2 [2020-03-20 19:36:25,716] multiqc [DEBUG ] No samples found: mtnucratio [2020-03-20 19:36:25,723] multiqc [DEBUG ] No samples found: picard [2020-03-20 19:36:25,800] multiqc [DEBUG ] No samples found: prokka [2020-03-20 19:36:25,841] multiqc [DEBUG ] No samples found: samblaster [2020-03-20 19:36:26,049] multiqc [DEBUG ] No samples found: samtools [2020-03-20 19:36:26,110] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-03-20 19:36:26,146] multiqc [DEBUG ] No samples found: bamtools [2020-03-20 19:36:26,158] multiqc [DEBUG ] No samples found: jellyfish [2020-03-20 19:36:26,281] multiqc [DEBUG ] No samples found: vcftools [2020-03-20 19:36:26,345] multiqc [DEBUG ] No samples found: longranger [2020-03-20 19:36:26,411] multiqc [DEBUG ] No samples found: stacks [2020-03-20 19:36:26,655] multiqc [DEBUG ] No samples found: bbmap [2020-03-20 19:36:26,746] multiqc [DEBUG ] No samples found: bismark [2020-03-20 19:36:26,774] multiqc [DEBUG ] No samples found: biscuit [2020-03-20 19:36:26,830] multiqc [DEBUG ] No samples found: hicexplorer [2020-03-20 19:36:26,868] multiqc [DEBUG ] No samples found: hicup [2020-03-20 19:36:26,894] multiqc [DEBUG ] No samples found: hicpro [2020-03-20 19:36:26,906] multiqc [DEBUG ] No samples found: salmon [2020-03-20 19:36:26,944] multiqc [DEBUG ] No samples found: kallisto [2020-03-20 19:36:27,096] multiqc [DEBUG ] No samples found: slamdunk [2020-03-20 19:36:27,172] multiqc [DEBUG ] No samples found: star [2020-03-20 19:36:27,211] multiqc [DEBUG ] No samples found: hisat2 [2020-03-20 19:36:27,249] multiqc [DEBUG ] No samples found: tophat [2020-03-20 19:36:27,312] multiqc [DEBUG ] No samples found: bowtie2 [2020-03-20 19:36:27,341] multiqc [DEBUG ] No samples found: bowtie1 [2020-03-20 19:36:27,354] multiqc [DEBUG ] No samples found: kat [2020-03-20 19:36:27,383] multiqc [DEBUG ] No samples found: leehom [2020-03-20 19:36:27,454] multiqc [DEBUG ] No samples found: adapterRemoval [2020-03-20 19:36:27,467] multiqc [DEBUG ] No samples found: clipandmerge [2020-03-20 19:36:27,522] multiqc [DEBUG ] No samples found: cutadapt [2020-03-20 19:36:27,553] multiqc [DEBUG ] No samples found: flexbar [2020-03-20 19:36:27,587] multiqc [DEBUG ] No samples found: trimmomatic [2020-03-20 19:36:27,658] multiqc [DEBUG ] No samples found: skewer [2020-03-20 19:36:27,695] multiqc [DEBUG ] No samples found: sortmerna [2020-03-20 19:36:27,740] multiqc [DEBUG ] No samples found: biobloomtools [2020-03-20 19:36:27,777] multiqc [DEBUG ] No samples found: fastq_screen [2020-03-20 19:36:27,829] multiqc [DEBUG ] No samples found: afterqc [2020-03-20 19:36:27,904] multiqc [DEBUG ] No samples found: fastp [2020-03-20 19:36:38,124] multiqc.modules.fastqc.fastqc [INFO ] Found 104 reports [2020-03-20 19:36:45,121] multiqc [DEBUG ] No samples found: minionqc [2020-03-20 19:36:45,224] multiqc [DEBUG ] No samples found: mosdepth [2020-03-20 19:36:45,273] multiqc [DEBUG ] No samples found: clusterflow [2020-03-20 19:36:45,330] multiqc [DEBUG ] No samples found: bcl2fastq [2020-03-20 19:36:45,383] multiqc [DEBUG ] No samples found: interop [2020-03-20 19:36:45,402] multiqc [DEBUG ] No samples found: flash [2020-03-20 19:36:45,461] multiqc [DEBUG ] No samples found: seqyclean [2020-03-20 19:36:45,556] multiqc [INFO ] Compressing plot data [2020-03-20 19:36:45,579] multiqc [INFO ] Report : multiqc_report.html [2020-03-20 19:36:45,579] multiqc [INFO ] Data : multiqc_data [2020-03-20 19:36:45,581] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,581] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,582] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,583] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,585] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,586] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,587] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,588] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,590] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,591] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,592] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,594] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:45,595] multiqc [DEBUG ] Moving data file from '/tmp/tmpb4ropm2l/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/strigg/analyses/20200320/multiqc_data' [2020-03-20 19:36:46,784] multiqc [INFO ] MultiQC complete