CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 145276 219162 39.86 364438 2 133328 233506 36.35 366834 3 138502 221627 38.46 360129 4 149430 207589 41.85 357019 5 145368 184952 44.01 330320 6 142541 157944 47.44 300485 7 159263 155351 50.62 314614 8 82838 183639 31.09 266477 9 74847 174680 30.00 249527 10 75228 161314 31.80 236542 11 79379 168190 32.06 247569 12 76695 165025 31.73 241720 13 75797 164649 31.52 240446 14 72682 171765 29.73 244447 15 71458 172079 29.34 243537 16 67078 174947 27.72 242025 17 64058 171487 27.20 235545 18 66584 178025 27.22 244609 19 64314 175473 26.82 239787 20 65407 173367 27.39 238774 21 65323 172418 27.48 237741 22 63538 168256 27.41 231794 23 63417 171514 26.99 234931 24 62638 169777 26.95 232415 25 62151 168655 26.93 230806 26 61171 169389 26.53 230560 27 60943 169651 26.43 230594 28 62648 178153 26.02 240801 29 61415 175102 25.97 236517 30 60381 179382 25.18 239763 31 61659 172135 26.37 233794 32 61078 170178 26.41 231256 33 61191 173343 26.09 234534 34 62245 175633 26.17 237878 35 61458 177039 25.77 238497 36 60639 174803 25.76 235442 37 59771 167380 26.31 227151 38 58649 169749 25.68 228398 39 59916 174707 25.54 234623 40 59228 166304 26.26 225532 41 58954 164503 26.38 223457 42 61386 170865 26.43 232251 43 59807 167919 26.26 227726 44 59020 165839 26.25 224859 45 60034 166187 26.54 226221 46 60879 172989 26.03 233868 47 59232 165556 26.35 224788 48 59692 169815 26.01 229507 49 60781 166452 26.75 227233 50 59152 169697 25.85 228849 51 59539 170171 25.92 229710 52 60731 166015 26.78 226746 53 59044 158467 27.15 217511 54 58089 159531 26.69 217620 55 57961 166680 25.80 224641 56 57786 159847 26.55 217633 57 57616 163978 26.00 221594 58 58004 168534 25.60 226538 59 58062 161532 26.44 219594 60 56616 160043 26.13 216659 61 58371 158872 26.87 217243 62 56764 157467 26.50 214231 63 56132 155169 26.56 211301 64 55121 155917 26.12 211038 65 56277 157996 26.26 214273 66 57565 155467 27.02 213032 67 55654 153457 26.61 209111 68 55703 152543 26.75 208246 69 54700 152272 26.43 206972 70 54351 148343 26.81 202694 71 53283 145450 26.81 198733 72 53212 144770 26.88 197982 73 52434 144043 26.69 196477 74 52165 144013 26.59 196178 75 51610 146348 26.07 197958 76 51332 145688 26.05 197020 77 51736 142955 26.57 194691 78 51796 142205 26.70 194001 79 50941 142486 26.34 193427 80 50217 142320 26.08 192537 81 50001 143473 25.84 193474 82 48429 139255 25.80 187684 83 49894 137620 26.61 187514 84 48643 137236 26.17 185879 85 48725 135156 26.50 183881 86 47850 133033 26.45 180883 87 46631 135280 25.63 181911 88 47966 140082 25.51 188048 89 46633 131259 26.21 177892 90 45675 133729 25.46 179404 91 44639 127164 25.98 171803 92 44407 128108 25.74 172515 93 44044 126924 25.76 170968 94 44166 128011 25.65 172177 95 43531 131930 24.81 175461 96 43405 126970 25.48 170375 97 42374 123704 25.51 166078 98 39516 116287 25.36 155803 99 31113 90467 25.59 121580 100 40250 111927 26.45 152177 101 37529 114002 24.77 151531 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 177378 386062 31.48 563440 2 104483 358357 22.57 462840 3 58124 342431 14.51 400555 4 41449 361094 10.30 402543 5 28545 318894 8.22 347439 6 21195 301302 6.57 322497 7 19932 368663 5.13 388595 8 10263 392998 2.55 403261 9 9325 378426 2.40 387751 10 9603 363835 2.57 373438 11 9420 363488 2.53 372908 12 8953 358195 2.44 367148 13 8154 351621 2.27 359775 14 7684 345071 2.18 352755 15 7450 350728 2.08 358178 16 6800 349983 1.91 356783 17 6715 343414 1.92 350129 18 6642 341515 1.91 348157 19 6781 346201 1.92 352982 20 6860 361566 1.86 368426 21 6914 365957 1.85 372871 22 6756 367844 1.80 374600 23 6734 364029 1.82 370763 24 6479 370127 1.72 376606 25 6264 355217 1.73 361481 26 6625 355276 1.83 361901 27 6239 363040 1.69 369279 28 6358 361770 1.73 368128 29 6479 366070 1.74 372549 30 6324 365622 1.70 371946 31 6340 373669 1.67 380009 32 6349 373393 1.67 379742 33 6459 366827 1.73 373286 34 6556 360622 1.79 367178 35 6592 357476 1.81 364068 36 6481 365523 1.74 372004 37 6297 352356 1.76 358653 38 6640 357758 1.82 364398 39 6203 356447 1.71 362650 40 6195 356245 1.71 362440 41 6567 366233 1.76 372800 42 6192 359568 1.69 365760 43 6286 351692 1.76 357978 44 6491 362461 1.76 368952 45 6588 356056 1.82 362644 46 6585 355723 1.82 362308 47 6661 352542 1.85 359203 48 6562 359445 1.79 366007 49 6505 356137 1.79 362642 50 6831 353746 1.89 360577 51 6886 367106 1.84 373992 52 6934 361688 1.88 368622 53 6817 353110 1.89 359927 54 7212 363340 1.95 370552 55 6961 356670 1.91 363631 56 7083 358019 1.94 365102 57 7034 355450 1.94 362484 58 6944 352491 1.93 359435 59 7231 357173 1.98 364404 60 7099 359064 1.94 366163 61 6898 348592 1.94 355490 62 6862 348708 1.93 355570 63 6933 353039 1.93 359972 64 7096 344909 2.02 352005 65 7687 349589 2.15 357276 66 6927 337141 2.01 344068 67 7041 333791 2.07 340832 68 7140 334831 2.09 341971 69 6791 329398 2.02 336189 70 6719 326234 2.02 332953 71 6807 326433 2.04 333240 72 6710 325377 2.02 332087 73 6857 324798 2.07 331655 74 7132 325983 2.14 333115 75 7080 327929 2.11 335009 76 6595 310520 2.08 317115 77 6981 310080 2.20 317061 78 6713 316928 2.07 323641 79 6460 304234 2.08 310694 80 6432 301656 2.09 308088 81 6604 301205 2.15 307809 82 6354 297019 2.09 303373 83 6962 306280 2.22 313242 84 6798 302759 2.20 309557 85 7010 302869 2.26 309879 86 6697 296075 2.21 302772 87 6873 300047 2.24 306920 88 6662 286393 2.27 293055 89 6589 282870 2.28 289459 90 6499 284355 2.23 290854 91 6286 279279 2.20 285565 92 6411 283578 2.21 289989 93 6522 275827 2.31 282349 94 6302 271807 2.27 278109 95 6196 266615 2.27 272811 96 6347 267460 2.32 273807 97 5821 245219 2.32 251040 98 5331 221468 2.35 226799 99 3115 143265 2.13 146380 100 3552 145362 2.39 148914 101 8102 245863 3.19 253965 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 283381 565401 33.39 848782 2 153908 582089 20.91 735997 3 98483 626503 13.58 724986 4 88428 678886 11.52 767314 5 81912 760918 9.72 842830 6 68136 835687 7.54 903823 7 61845 1017354 5.73 1079199 8 37504 1097694 3.30 1135198 9 29318 1013004 2.81 1042322 10 28915 983484 2.86 1012399 11 31573 989528 3.09 1021101 12 28061 980825 2.78 1008886 13 29467 986408 2.90 1015875 14 31177 1008574 3.00 1039751 15 28045 1035225 2.64 1063270 16 27088 1035270 2.55 1062358 17 30623 1060583 2.81 1091206 18 27747 1090989 2.48 1118736 19 27654 1103390 2.44 1131044 20 30348 1136236 2.60 1166584 21 27400 1142614 2.34 1170014 22 28453 1142550 2.43 1171003 23 30653 1150612 2.59 1181265 24 28116 1154101 2.38 1182217 25 28590 1156274 2.41 1184864 26 31459 1183053 2.59 1214512 27 27669 1187956 2.28 1215625 28 27355 1195162 2.24 1222517 29 30964 1192124 2.53 1223088 30 27285 1174235 2.27 1201520 31 27912 1161140 2.35 1189052 32 29580 1154218 2.50 1183798 33 27282 1165258 2.29 1192540 34 29155 1159345 2.45 1188500 35 30284 1161637 2.54 1191921 36 27780 1184373 2.29 1212153 37 27709 1178208 2.30 1205917 38 30354 1184324 2.50 1214678 39 26831 1172192 2.24 1199023 40 27527 1162692 2.31 1190219 41 29962 1162526 2.51 1192488 42 27477 1158533 2.32 1186010 43 28876 1167284 2.41 1196160 44 30656 1178017 2.54 1208673 45 27536 1164400 2.31 1191936 46 28024 1163056 2.35 1191080 47 29937 1173760 2.49 1203697 48 27185 1169776 2.27 1196961 49 27676 1153334 2.34 1181010 50 29380 1147654 2.50 1177034 51 26036 1132587 2.25 1158623 52 27574 1129509 2.38 1157083 53 28975 1123153 2.51 1152128 54 26751 1118972 2.33 1145723 55 26999 1114789 2.36 1141788 56 28860 1109791 2.53 1138651 57 26383 1122719 2.30 1149102 58 27133 1126111 2.35 1153244 59 29313 1126908 2.54 1156221 60 26052 1113446 2.29 1139498 61 27327 1108435 2.41 1135762 62 28035 1086114 2.52 1114149 63 26048 1077916 2.36 1103964 64 27114 1077804 2.45 1104918 65 28130 1068075 2.57 1096205 66 25328 1053123 2.35 1078451 67 25715 1056352 2.38 1082067 68 27895 1057414 2.57 1085309 69 25153 1067500 2.30 1092653 70 25621 1046582 2.39 1072203 71 27926 1056140 2.58 1084066 72 25520 1047548 2.38 1073068 73 26751 1024579 2.54 1051330 74 27149 1017935 2.60 1045084 75 24495 1005362 2.38 1029857 76 24840 1001931 2.42 1026771 77 26917 994914 2.63 1021831 78 23913 990913 2.36 1014826 79 23806 986200 2.36 1010006 80 26384 984174 2.61 1010558 81 24136 965339 2.44 989475 82 24683 962149 2.50 986832 83 25687 958034 2.61 983721 84 23374 944436 2.42 967810 85 24378 933973 2.54 958351 86 24981 923714 2.63 948695 87 22896 911694 2.45 934590 88 23290 899819 2.52 923109 89 24332 893808 2.65 918140 90 22250 886387 2.45 908637 91 22519 876649 2.50 899168 92 23778 872531 2.65 896309 93 21564 862222 2.44 883786 94 22149 856867 2.52 879016 95 23383 839004 2.71 862387 96 20765 822756 2.46 843521 97 20608 800517 2.51 821125 98 20788 745266 2.71 766054 99 13405 519147 2.52 532552 100 12319 459386 2.61 471705 101 20909 760983 2.67 781892 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 130705 151031 46.39 281736 2 120381 139367 46.35 259748 3 127954 149549 46.11 277503 4 118654 173117 40.67 291771 5 52311 224319 18.91 276630 6 31386 115676 21.34 147062 7 27498 124572 18.08 152070 8 29087 114282 20.29 143369 9 25706 104659 19.72 130365 10 28527 110369 20.54 138896 11 30260 111389 21.36 141649 12 29384 109584 21.14 138968 13 29887 100350 22.95 130237 14 31842 105516 23.18 137358 15 30891 92654 25.00 123545 16 29212 87810 24.96 117022 17 34122 94368 26.56 128490 18 33128 94481 25.96 127609 19 31462 91564 25.57 123026 20 29826 97517 23.42 127343 21 30916 83457 27.03 114373 22 30451 86849 25.96 117300 23 29026 82642 25.99 111668 24 27492 80761 25.40 108253 25 31498 87489 26.47 118987 26 27911 79425 26.00 107336 27 31882 83487 27.63 115369 28 27679 75041 26.95 102720 29 27583 78182 26.08 105765 30 26908 73869 26.70 100777 31 25709 73631 25.88 99340 32 25082 70901 26.13 95983 33 28608 74343 27.79 102951 34 26498 78004 25.36 104502 35 31457 78162 28.70 109619 36 27033 73472 26.90 100505 37 27373 71106 27.80 98479 38 24404 72040 25.30 96444 39 25156 68380 26.89 93536 40 27602 68536 28.71 96138 41 24265 72178 25.16 96443 42 24652 77262 24.19 101914 43 24378 68519 26.24 92897 44 23223 67188 25.69 90411 45 27644 74544 27.05 102188 46 22143 60688 26.73 82831 47 22407 62298 26.45 84705 48 22699 64996 25.88 87695 49 22161 66349 25.04 88510 50 21328 60515 26.06 81843 51 20827 59522 25.92 80349 52 20878 62830 24.94 83708 53 20775 59751 25.80 80526 54 21080 58788 26.39 79868 55 21605 59217 26.73 80822 56 19455 58397 24.99 77852 57 21154 55525 27.59 76679 58 20108 54632 26.90 74740 59 19232 53982 26.27 73214 60 19429 53326 26.70 72755 61 17809 50868 25.93 68677 62 17308 49023 26.09 66331 63 18588 49264 27.39 67852 64 18043 48048 27.30 66091 65 16901 45891 26.92 62792 66 18004 51147 26.04 69151 67 16998 50571 25.16 67569 68 17974 55512 24.46 73486 69 17013 44474 27.67 61487 70 15625 43270 26.53 58895 71 16428 42831 27.72 59259 72 15237 41437 26.89 56674 73 15971 42907 27.13 58878 74 14536 42102 25.66 56638 75 14345 43776 24.68 58121 76 14726 39297 27.26 54023 77 14200 39616 26.39 53816 78 14285 42363 25.22 56648 79 13529 38090 26.21 51619 80 13634 37975 26.42 51609 81 13458 38060 26.12 51518 82 13757 36806 27.21 50563 83 13573 35501 27.66 49074 84 14346 38948 26.92 53294 85 12959 36705 26.09 49664 86 12719 35680 26.28 48399 87 12487 33889 26.93 46376 88 12651 33700 27.29 46351 89 13059 35108 27.11 48167 90 13053 35905 26.66 48958 91 12050 33932 26.21 45982 92 11709 34196 25.51 45905 93 11975 34670 25.67 46645 94 12160 32978 26.94 45138 95 11663 31912 26.77 43575 96 11542 32184 26.40 43726 97 12238 32958 27.08 45196 98 11046 29899 26.98 40945 99 9859 0 100.00 9859 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43467 200592 17.81 244059 2 46545 207479 18.32 254024 3 42396 206465 17.04 248861 4 46751 225864 17.15 272615 5 6760 399029 1.67 405789 6 6176 510132 1.20 516308 7 3568 271789 1.30 275357 8 3965 286851 1.36 290816 9 3355 247609 1.34 250964 10 3446 237552 1.43 240998 11 4666 293680 1.56 298346 12 3674 242747 1.49 246421 13 3906 247957 1.55 251863 14 3485 228090 1.50 231575 15 3515 220767 1.57 224282 16 3327 207377 1.58 210704 17 3832 222275 1.69 226107 18 3419 189141 1.78 192560 19 3060 185095 1.63 188155 20 2863 184044 1.53 186907 21 3350 180181 1.83 183531 22 3302 196723 1.65 200025 23 3130 187180 1.64 190310 24 2771 171484 1.59 174255 25 2915 173497 1.65 176412 26 3178 187731 1.66 190909 27 3003 171548 1.72 174551 28 2689 168425 1.57 171114 29 2928 178587 1.61 181515 30 2687 163827 1.61 166514 31 2628 163026 1.59 165654 32 2726 163031 1.64 165757 33 3045 189778 1.58 192823 34 2649 159260 1.64 161909 35 2682 164415 1.61 167097 36 2725 168943 1.59 171668 37 2607 162975 1.57 165582 38 2743 159834 1.69 162577 39 2621 160166 1.61 162787 40 2581 147319 1.72 149900 41 2356 138427 1.67 140783 42 2274 132693 1.68 134967 43 2327 139441 1.64 141768 44 2274 137988 1.62 140262 45 2198 129707 1.67 131905 46 2184 128019 1.68 130203 47 2227 131490 1.67 133717 48 2181 127100 1.69 129281 49 2244 132852 1.66 135096 50 2313 128554 1.77 130867 51 2039 121910 1.65 123949 52 2066 118777 1.71 120843 53 2218 127905 1.70 130123 54 2139 119335 1.76 121474 55 2082 116505 1.76 118587 56 1998 117658 1.67 119656 57 2148 113407 1.86 115555 58 2038 114953 1.74 116991 59 1863 113234 1.62 115097 60 2020 114085 1.74 116105 61 1812 108605 1.64 110417 62 1978 111862 1.74 113840 63 2161 113136 1.87 115297 64 1720 102458 1.65 104178 65 1753 102983 1.67 104736 66 1729 98932 1.72 100661 67 1805 105156 1.69 106961 68 1729 103327 1.65 105056 69 1782 100885 1.74 102667 70 1598 99656 1.58 101254 71 1716 101076 1.67 102792 72 1552 94850 1.61 96402 73 1600 92076 1.71 93676 74 1583 93611 1.66 95194 75 1491 90395 1.62 91886 76 1452 88281 1.62 89733 77 1552 92932 1.64 94484 78 1436 88603 1.59 90039 79 1519 86320 1.73 87839 80 1463 84740 1.70 86203 81 1492 82449 1.78 83941 82 1406 81776 1.69 83182 83 1456 82276 1.74 83732 84 1359 79931 1.67 81290 85 1454 87321 1.64 88775 86 1291 78916 1.61 80207 87 1392 79223 1.73 80615 88 1192 73742 1.59 74934 89 1412 77372 1.79 78784 90 1446 77293 1.84 78739 91 1442 80838 1.75 82280 92 1262 77152 1.61 78414 93 1165 72268 1.59 73433 94 1235 70533 1.72 71768 95 1268 71969 1.73 73237 96 1180 70885 1.64 72065 97 1094 68571 1.57 69665 98 967 66022 1.44 66989 99 712 0 100.00 712 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63796 277569 18.69 341365 2 51195 227633 18.36 278828 3 51551 226925 18.51 278476 4 50027 218651 18.62 268678 5 12105 427578 2.75 439683 6 12581 602911 2.04 615492 7 15435 815095 1.86 830530 8 15994 820975 1.91 836969 9 15908 762684 2.04 778592 10 15820 770854 2.01 786674 11 15466 751224 2.02 766690 12 15106 698216 2.12 713322 13 14898 724567 2.01 739465 14 15197 721024 2.06 736221 15 14924 724914 2.02 739838 16 14434 702476 2.01 716910 17 14672 692789 2.07 707461 18 14966 710254 2.06 725220 19 13983 670395 2.04 684378 20 14555 700258 2.04 714813 21 13927 644623 2.11 658550 22 13862 635442 2.13 649304 23 13317 618623 2.11 631940 24 12626 590850 2.09 603476 25 12948 589133 2.15 602081 26 12753 579722 2.15 592475 27 13379 619203 2.11 632582 28 12615 594010 2.08 606625 29 12837 584358 2.15 597195 30 12406 566420 2.14 578826 31 11718 551107 2.08 562825 32 11708 539423 2.12 551131 33 11702 526186 2.18 537888 34 11889 519800 2.24 531689 35 12266 532600 2.25 544866 36 11437 530016 2.11 541453 37 11658 520208 2.19 531866 38 12309 552508 2.18 564817 39 11473 508483 2.21 519956 40 11504 529878 2.12 541382 41 11289 503693 2.19 514982 42 11200 507596 2.16 518796 43 10759 479144 2.20 489903 44 10983 477548 2.25 488531 45 10697 476392 2.20 487089 46 10493 482907 2.13 493400 47 10400 468512 2.17 478912 48 10627 458182 2.27 468809 49 9852 458144 2.11 467996 50 10019 451981 2.17 462000 51 9771 440008 2.17 449779 52 9159 420582 2.13 429741 53 9120 421464 2.12 430584 54 9106 411948 2.16 421054 55 9503 422540 2.20 432043 56 8938 409511 2.14 418449 57 8865 415372 2.09 424237 58 8685 407820 2.09 416505 59 8769 395839 2.17 404608 60 8775 408120 2.10 416895 61 8429 388322 2.12 396751 62 8264 377353 2.14 385617 63 8462 380983 2.17 389445 64 7966 367829 2.12 375795 65 8002 374801 2.09 382803 66 8071 361302 2.19 369373 67 7771 356968 2.13 364739 68 8042 367223 2.14 375265 69 7919 359373 2.16 367292 70 7778 350319 2.17 358097 71 7709 345251 2.18 352960 72 7300 335502 2.13 342802 73 7457 330670 2.21 338127 74 7142 332930 2.10 340072 75 7308 334442 2.14 341750 76 6901 318264 2.12 325165 77 7045 315614 2.18 322659 78 7007 315020 2.18 322027 79 6858 320091 2.10 326949 80 6777 306285 2.16 313062 81 6923 308063 2.20 314986 82 6702 303226 2.16 309928 83 6696 301449 2.17 308145 84 6598 304153 2.12 310751 85 6451 295340 2.14 301791 86 6581 292801 2.20 299382 87 6257 285918 2.14 292175 88 6252 285131 2.15 291383 89 6025 277820 2.12 283845 90 6212 278324 2.18 284536 91 6178 273093 2.21 279271 92 5842 274183 2.09 280025 93 5844 267415 2.14 273259 94 5662 262694 2.11 268356 95 5678 259360 2.14 265038 96 5259 253347 2.03 258606 97 5181 256580 1.98 261761 98 4437 239146 1.82 243583 99 3160 0 100.00 3160