CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 54656 158851 25.60 213507 2 54758 161078 25.37 215836 3 55863 164257 25.38 220120 4 54877 163597 25.12 218474 5 54025 161217 25.10 215242 6 55198 158809 25.79 214007 7 55022 155751 26.10 210773 8 54655 157899 25.71 212554 9 55385 160022 25.71 215407 10 55245 160721 25.58 215966 11 54431 163549 24.97 217980 12 53794 156833 25.54 210627 13 53436 160776 24.95 214212 14 54142 167134 24.47 221276 15 53285 157821 25.24 211106 16 53232 154884 25.58 208116 17 55097 160239 25.59 215336 18 54287 160162 25.31 214449 19 53285 157317 25.30 210602 20 54086 160204 25.24 214290 21 55104 165778 24.95 220882 22 53293 157330 25.30 210623 23 53476 158940 25.18 212416 24 53885 154206 25.89 208091 25 52797 157981 25.05 210778 26 52987 156511 25.29 209498 27 53461 151391 26.10 204852 28 52052 143595 26.61 195647 29 50964 142465 26.35 193429 30 50856 151340 25.15 202196 31 50156 145993 25.57 196149 32 50198 152246 24.80 202444 33 50119 150654 24.96 200773 34 50242 146392 25.55 196634 35 48697 143097 25.39 191794 36 49318 138252 26.29 187570 37 48048 141712 25.32 189760 38 47900 139228 25.60 187128 39 47115 142738 24.82 189853 40 46972 139315 25.21 186287 41 48209 140595 25.53 188804 42 47015 136167 25.67 183182 43 46374 135020 25.57 181394 44 45439 136079 25.03 181518 45 45575 132349 25.61 177924 46 44715 128466 25.82 173181 47 44479 129144 25.62 173623 48 43591 127926 25.41 171517 49 43066 128498 25.10 171564 50 42346 129231 24.68 171577 51 42112 128183 24.73 170295 52 42082 125595 25.10 167677 53 42223 124687 25.30 166910 54 41615 124633 25.03 166248 55 40764 126315 24.40 167079 56 40903 124728 24.70 165631 57 39591 124866 24.07 164457 58 40398 122564 24.79 162962 59 39098 120592 24.48 159690 60 39194 118917 24.79 158111 61 37708 114772 24.73 152480 62 35776 116566 23.48 152342 63 33675 111571 23.18 145246 64 23247 76402 23.33 99649 65 22729 76374 22.93 99103 66 21107 69220 23.37 90327 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6440 323398 1.95 329838 2 5962 331177 1.77 337139 3 5757 328204 1.72 333961 4 6128 334105 1.80 340233 5 5564 332661 1.65 338225 6 5676 339014 1.65 344690 7 5674 347022 1.61 352696 8 5747 338900 1.67 344647 9 5986 332550 1.77 338536 10 5951 328532 1.78 334483 11 5784 336055 1.69 341839 12 5653 325866 1.71 331519 13 5788 331304 1.72 337092 14 5465 331479 1.62 336944 15 5443 329008 1.63 334451 16 5782 342304 1.66 348086 17 5393 334848 1.59 340241 18 5544 326962 1.67 332506 19 5550 336572 1.62 342122 20 5671 333042 1.67 338713 21 5691 328458 1.70 334149 22 5804 326026 1.75 331830 23 5528 329337 1.65 334865 24 5428 326355 1.64 331783 25 5773 327555 1.73 333328 26 5673 338373 1.65 344046 27 5758 334311 1.69 340069 28 5793 325672 1.75 331465 29 5940 337836 1.73 343776 30 5746 330001 1.71 335747 31 5703 325790 1.72 331493 32 5581 322828 1.70 328409 33 5420 318642 1.67 324062 34 5637 323442 1.71 329079 35 5535 323851 1.68 329386 36 5210 314922 1.63 320132 37 5388 315302 1.68 320690 38 5319 322388 1.62 327707 39 5374 313760 1.68 319134 40 6124 319706 1.88 325830 41 5180 310680 1.64 315860 42 5229 301929 1.70 307158 43 5392 304072 1.74 309464 44 5027 297812 1.66 302839 45 5014 295078 1.67 300092 46 4997 291894 1.68 296891 47 4937 289743 1.68 294680 48 5078 291294 1.71 296372 49 5398 292294 1.81 297692 50 5064 288976 1.72 294040 51 4570 275395 1.63 279965 52 4905 271874 1.77 276779 53 4648 279335 1.64 283983 54 4321 268147 1.59 272468 55 4288 263846 1.60 268134 56 4542 260520 1.71 265062 57 4164 258159 1.59 262323 58 4745 267326 1.74 272071 59 4715 265121 1.75 269836 60 4800 262370 1.80 267170 61 4587 252117 1.79 256704 62 4500 247795 1.78 252295 63 4174 221084 1.85 225258 64 2849 154382 1.81 157231 65 2598 152101 1.68 154699 66 2627 144547 1.78 147174 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33169 1080302 2.98 1113471 2 28779 1087286 2.58 1116065 3 28860 1099547 2.56 1128407 4 33017 1098165 2.92 1131182 5 28371 1075756 2.57 1104127 6 29244 1069387 2.66 1098631 7 31201 1066493 2.84 1097694 8 28783 1067848 2.62 1096631 9 31157 1066485 2.84 1097642 10 32471 1069791 2.95 1102262 11 29046 1087695 2.60 1116741 12 28666 1082555 2.58 1111221 13 33008 1095964 2.92 1128972 14 28217 1086761 2.53 1114978 15 29050 1077721 2.62 1106771 16 32044 1086107 2.87 1118151 17 29048 1081767 2.62 1110815 18 31291 1088405 2.79 1119696 19 32960 1098724 2.91 1131684 20 29551 1091434 2.64 1120985 21 29586 1085222 2.65 1114808 22 32061 1096018 2.84 1128079 23 28232 1088365 2.53 1116597 24 28346 1072555 2.57 1100901 25 31240 1070851 2.83 1102091 26 27199 1056990 2.51 1084189 27 29275 1055542 2.70 1084817 28 30953 1051132 2.86 1082085 29 27839 1047052 2.59 1074891 30 28058 1038886 2.63 1066944 31 30677 1034033 2.88 1064710 32 27257 1049703 2.53 1076960 33 27746 1045677 2.58 1073423 34 30395 1047994 2.82 1078389 35 26453 1035326 2.49 1061779 36 27937 1025096 2.65 1053033 37 29359 1007374 2.83 1036733 38 26550 998222 2.59 1024772 39 27674 994181 2.71 1021855 40 28755 984053 2.84 1012808 41 25542 973355 2.56 998897 42 25765 969805 2.59 995570 43 28318 969119 2.84 997437 44 25496 984430 2.52 1009926 45 25660 963882 2.59 989542 46 28476 976878 2.83 1005354 47 25485 968813 2.56 994298 48 27005 947102 2.77 974107 49 27792 937731 2.88 965523 50 24345 924118 2.57 948463 51 24550 915212 2.61 939762 52 27391 910676 2.92 938067 53 23221 905213 2.50 928434 54 23660 900995 2.56 924655 55 26631 900178 2.87 926809 56 23608 884544 2.60 908152 57 24532 880354 2.71 904886 58 25557 878353 2.83 903910 59 23049 863319 2.60 886368 60 23522 850964 2.69 874486 61 24535 837313 2.85 861848 62 21575 805419 2.61 826994 63 20621 737851 2.72 758472 64 16388 513105 3.10 529493 65 12613 507303 2.43 519916 66 13519 478186 2.75 491705 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29045 92089 23.98 121134 2 33788 104650 24.41 138438 3 30038 91289 24.76 121327 4 32825 101191 24.49 134016 5 29394 86951 25.26 116345 6 30173 91812 24.74 121985 7 29154 90715 24.32 119869 8 27967 86266 24.48 114233 9 27438 81125 25.27 108563 10 30887 95364 24.46 126251 11 29063 89531 24.51 118594 12 34622 91136 27.53 125758 13 29588 83648 26.13 113236 14 30243 82459 26.83 112702 15 27492 85476 24.34 112968 16 27871 79375 25.99 107246 17 29828 82379 26.58 112207 18 26375 85229 23.63 111604 19 27230 98949 21.58 126179 20 26899 79939 25.18 106838 21 25987 78778 24.81 104765 22 30619 89669 25.45 120288 23 24858 71180 25.88 96038 24 25036 74870 25.06 99906 25 25303 75788 25.03 101091 26 24841 87519 22.11 112360 27 23721 70626 25.14 94347 28 23203 69583 25.01 92786 29 23278 77234 23.16 100512 30 23069 73739 23.83 96808 31 23314 71218 24.66 94532 32 24814 68568 26.57 93382 33 21615 71813 23.14 93428 34 22994 66259 25.76 89253 35 22246 66812 24.98 89058 36 21322 64895 24.73 86217 37 21713 68675 24.02 90388 38 19847 62787 24.02 82634 39 19404 56955 25.41 76359 40 20787 57771 26.46 78558 41 20289 56045 26.58 76334 42 19056 53761 26.17 72817 43 20200 59374 25.39 79574 44 19116 58298 24.69 77414 45 20251 64166 23.99 84417 46 18688 53368 25.94 72056 47 17575 54254 24.47 71829 48 18298 49635 26.94 67933 49 17153 48233 26.23 65386 50 17846 49138 26.64 66984 51 15916 48873 24.57 64789 52 16124 50985 24.03 67109 53 16495 45827 26.47 62322 54 15944 45929 25.77 61873 55 16008 48444 24.84 64452 56 15152 44095 25.57 59247 57 15099 43041 25.97 58140 58 14969 43317 25.68 58286 59 15338 42376 26.58 57714 60 15229 40742 27.21 55971 61 16112 44723 26.48 60835 62 14615 42706 25.50 57321 63 14157 44494 24.14 58651 64 13759 38467 26.35 52226 65 13409 37312 26.44 50721 66 7491 19574 27.68 27065 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3698 197072 1.84 200770 2 3548 197261 1.77 200809 3 3711 215529 1.69 219240 4 3338 194263 1.69 197601 5 3203 195557 1.61 198760 6 3335 202367 1.62 205702 7 3109 188097 1.63 191206 8 3038 188725 1.58 191763 9 3176 186409 1.68 189585 10 3594 216529 1.63 220123 11 3323 187879 1.74 191202 12 3218 191557 1.65 194775 13 3232 193473 1.64 196705 14 3139 189469 1.63 192608 15 3218 189508 1.67 192726 16 3412 204591 1.64 208003 17 2977 168953 1.73 171930 18 2845 161933 1.73 164778 19 2605 154061 1.66 156666 20 2806 172251 1.60 175057 21 2695 164718 1.61 167413 22 2569 151588 1.67 154157 23 2545 149565 1.67 152110 24 2637 153185 1.69 155822 25 2555 149463 1.68 152018 26 2557 154551 1.63 157108 27 2671 153407 1.71 156078 28 2418 140781 1.69 143199 29 2431 138678 1.72 141109 30 2582 149338 1.70 151920 31 2571 143191 1.76 145762 32 2497 138129 1.78 140626 33 2343 136485 1.69 138828 34 2627 133975 1.92 136602 35 2664 144885 1.81 147549 36 2209 132769 1.64 134978 37 2425 134803 1.77 137228 38 2143 131428 1.60 133571 39 2303 134838 1.68 137141 40 2660 144059 1.81 146719 41 1959 117853 1.64 119812 42 2043 119938 1.67 121981 43 2156 116785 1.81 118941 44 2159 124232 1.71 126391 45 2072 127962 1.59 130034 46 2038 117831 1.70 119869 47 1898 117082 1.60 118980 48 2097 122231 1.69 124328 49 1814 109208 1.63 111022 50 1885 108709 1.70 110594 51 1779 108836 1.61 110615 52 1722 104839 1.62 106561 53 1738 104540 1.64 106278 54 1837 110027 1.64 111864 55 1775 112293 1.56 114068 56 1728 98715 1.72 100443 57 1638 97405 1.65 99043 58 1749 95863 1.79 97612 59 1615 96886 1.64 98501 60 1649 96506 1.68 98155 61 1584 91006 1.71 92590 62 1671 100951 1.63 102622 63 1497 89400 1.65 90897 64 1525 89171 1.68 90696 65 1325 81523 1.60 82848 66 819 46251 1.74 47070 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 17163 667868 2.51 685031 2 17671 670208 2.57 687879 3 17252 661080 2.54 678332 4 17963 704625 2.49 722588 5 16985 676279 2.45 693264 6 17924 681495 2.56 699419 7 17027 652757 2.54 669784 8 15883 616861 2.51 632744 9 15971 608309 2.56 624280 10 15871 594657 2.60 610528 11 16101 592843 2.64 608944 12 16674 609606 2.66 626280 13 15443 622468 2.42 637911 14 15565 592546 2.56 608111 15 16129 628276 2.50 644405 16 15494 592612 2.55 608106 17 15434 615865 2.44 631299 18 15266 575926 2.58 591192 19 15162 586216 2.52 601378 20 14592 542558 2.62 557150 21 14567 547443 2.59 562010 22 14170 538926 2.56 553096 23 13876 555914 2.44 569790 24 13739 539341 2.48 553080 25 14072 528273 2.59 542345 26 13007 520390 2.44 533397 27 13207 517127 2.49 530334 28 12959 505053 2.50 518012 29 12220 477412 2.50 489632 30 12034 489802 2.40 501836 31 11801 468682 2.46 480483 32 12329 480732 2.50 493061 33 11893 474662 2.44 486555 34 12971 477413 2.65 490384 35 11785 470506 2.44 482291 36 11514 458999 2.45 470513 37 11478 471118 2.38 482596 38 11270 439812 2.50 451082 39 10771 433179 2.43 443950 40 10899 438362 2.43 449261 41 10807 425779 2.48 436586 42 10440 432928 2.35 443368 43 10612 423158 2.45 433770 44 10290 411799 2.44 422089 45 10367 426134 2.38 436501 46 10625 415512 2.49 426137 47 10234 410508 2.43 420742 48 10111 398437 2.47 408548 49 9897 386365 2.50 396262 50 9788 378075 2.52 387863 51 9353 379881 2.40 389234 52 9552 385644 2.42 395196 53 9020 366303 2.40 375323 54 9030 359896 2.45 368926 55 9161 364842 2.45 374003 56 9101 371460 2.39 380561 57 8955 350694 2.49 359649 58 9124 352857 2.52 361981 59 8754 348207 2.45 356961 60 8603 344606 2.44 353209 61 8567 354344 2.36 362911 62 8145 338629 2.35 346774 63 8163 331824 2.40 339987 64 7834 321491 2.38 329325 65 7410 315047 2.30 322457 66 4020 148104 2.64 152124