Bismark Processing Report

EPI-167_S10_L002_R1_001_val_1.fq.gz and EPI-167_S10_L002_R2_001_val_2.fq.gz

Data processed at 02:18 on 2020-03-17


Sequence pairs analysed in total 23436512
Paired-end alignments with a unique best hit 9588745
Pairs without alignments under any condition 11082779
Pairs that did not map uniquely 2764988
Genomic sequence context not extractable (edges of chromosomes) 1

Cytosine Methylation

Total C's analysed 199524252
Methylated C's in CpG context 6315385
Methylated C's in CHG context 695740
Methylated C's in CHH context 3620104
Methylated C's in Unknown context 18796
Unmethylated C's in CpG context 18667755
Unmethylated C's in CHG context 40114533
Unmethylated C's in CHH context 130110735
Unmethylated C's in Unknown context 361000
Percentage methylation (CpG context) 25.3%
Percentage methylation (CHG context) 1.7%
Percentage methylation (CHH context) 2.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4754776 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4833968 original bottom strand