/var/spool/slurm/d/job1584223/slurm_script: line 21: fg: no job control Filtering allc files using 8 node(s). Fri Dec 20 19:52:31 2019 Splitting allc files for chromosome Scaffold_01 Fri Dec 20 19:52:37 2019 Running rms tests for chromosome Scaffold_01 Fri Dec 20 19:52:40 2019 Splitting allc files for chromosome Scaffold_02 Fri Dec 20 19:52:40 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_02 Fri Dec 20 19:52:43 2019 Splitting allc files for chromosome Scaffold_03 Fri Dec 20 19:52:43 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_03 Fri Dec 20 19:52:46 2019 Splitting allc files for chromosome Scaffold_04 Fri Dec 20 19:52:46 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_04 Fri Dec 20 19:52:49 2019 Splitting allc files for chromosome Scaffold_05 Fri Dec 20 19:52:49 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_05 Fri Dec 20 19:52:52 2019 Splitting allc files for chromosome Scaffold_06 Fri Dec 20 19:52:52 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_06 Fri Dec 20 19:52:55 2019 Splitting allc files for chromosome Scaffold_07 Fri Dec 20 19:52:55 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_07 Fri Dec 20 19:52:58 2019 Splitting allc files for chromosome Scaffold_08 Fri Dec 20 19:52:58 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_08 Fri Dec 20 19:53:01 2019 Splitting allc files for chromosome Scaffold_09 Fri Dec 20 19:53:01 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_09 Fri Dec 20 19:53:03 2019 Splitting allc files for chromosome Scaffold_10 Fri Dec 20 19:53:03 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_10 Fri Dec 20 19:53:06 2019 Splitting allc files for chromosome Scaffold_11 Fri Dec 20 19:53:06 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_11 Fri Dec 20 19:53:08 2019 Splitting allc files for chromosome Scaffold_12 Fri Dec 20 19:53:08 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_12 Fri Dec 20 19:53:12 2019 Splitting allc files for chromosome Scaffold_13 Fri Dec 20 19:53:12 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_13 Fri Dec 20 19:53:14 2019 Splitting allc files for chromosome Scaffold_14 Fri Dec 20 19:53:14 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_14 Fri Dec 20 19:53:17 2019 Splitting allc files for chromosome Scaffold_15 Fri Dec 20 19:53:17 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_15 Fri Dec 20 19:53:19 2019 Splitting allc files for chromosome Scaffold_16 Fri Dec 20 19:53:19 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_16 Fri Dec 20 19:53:21 2019 Splitting allc files for chromosome Scaffold_17 Fri Dec 20 19:53:21 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_17 Fri Dec 20 19:53:23 2019 Splitting allc files for chromosome Scaffold_18 Fri Dec 20 19:53:23 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Running rms tests for chromosome Scaffold_18 Fri Dec 20 19:53:25 2019 gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. gsl: discrete.c:238: ERROR: probabilities must be non-negative Default GSL error handler invoked. Merging sorted day10_AllpH_DMR250bp_MCmax30_cov5x_rms_results.tsv files. Fri Dec 20 19:54:28 2019 Begin FDR Correction Fri Dec 20 19:54:29 2019 m0 estimate for iteration 0: 11391 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Fri Dec 20 19:54:29 2019 Traceback (most recent call last): File "/gscratch/srlab/strigg/bin/anaconda3/bin/methylpy", line 4, in __import__('pkg_resources').run_script('methylpy==1.3.7', 'methylpy') File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 666, in run_script self.require(requires)[0].run_script(script_name, ns) File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1453, in run_script exec(code, namespace, namespace) File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/methylpy-1.3.7-py3.7.egg/EGG-INFO/scripts/methylpy", line 5, in parse_args() File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/methylpy-1.3.7-py3.7.egg/methylpy/parser.py", line 71, in parse_args seed=args.seed) File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/methylpy-1.3.7-py3.7.egg/methylpy/DMRfind.py", line 274, in DMRfind convergence_diff=convergence_diff) File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/methylpy-1.3.7-py3.7.egg/methylpy/DMRfind.py", line 319, in merge_DMS_to_DMR input_rms_file) File "/gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/methylpy-1.3.7-py3.7.egg/methylpy/DMRfind.py", line 482, in get_resid_cutoff residuals.append(float(resid)) ValueError: could not convert string to float: '1.0622Scaffold_01'