/var/spool/slurm/d/job1240043/slurm_script: line 28: fg: no job control Begin flipping the strand of read 2 Wed Aug 28 11:29:14 2019 [mpileup] 1 samples in 1 input files Reference fasta not indexed. Indexing. Begin flipping the strand of read 2 Wed Aug 28 11:40:56 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 11:53:53 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 12:04:18 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 12:15:24 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 12:23:51 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 12:36:51 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 12:47:11 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 12:57:21 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 13:09:56 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 13:20:41 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 13:30:48 2019 [mpileup] 1 samples in 1 input files /var/spool/slurm/d/job1240043/slurm_script: line 40: fg: no job control Begin flipping the strand of read 2 Wed Aug 28 13:42:39 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 13:55:18 2019 Input not indexed. Indexing... Wed Aug 28 14:00:08 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 14:10:45 2019 Input not indexed. Indexing... Wed Aug 28 14:14:45 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 14:23:58 2019 Input not indexed. Indexing... Wed Aug 28 14:28:54 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 14:39:45 2019 Input not indexed. Indexing... Wed Aug 28 14:42:51 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 14:50:20 2019 Input not indexed. Indexing... Wed Aug 28 14:51:46 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 14:55:47 2019 Input not indexed. Indexing... Wed Aug 28 14:59:14 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 15:07:21 2019 Input not indexed. Indexing... Wed Aug 28 15:10:18 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 15:17:21 2019 Input not indexed. Indexing... Wed Aug 28 15:21:07 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 15:29:45 2019 Input not indexed. Indexing... Wed Aug 28 15:34:10 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 15:44:10 2019 Input not indexed. Indexing... Wed Aug 28 15:46:20 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 15:51:53 2019 Input not indexed. Indexing... Wed Aug 28 15:55:20 2019 [mpileup] 1 samples in 1 input files /var/spool/slurm/d/job1240043/slurm_script: line 52: fg: no job control Begin flipping the strand of read 2 Wed Aug 28 16:03:10 2019 Input not indexed. Indexing... Wed Aug 28 16:05:14 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 16:10:46 2019 Input not indexed. Indexing... Wed Aug 28 16:13:41 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 16:20:58 2019 Input not indexed. Indexing... Wed Aug 28 16:24:34 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 16:33:21 2019 Input not indexed. Indexing... Wed Aug 28 16:37:14 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 16:46:21 2019 Input not indexed. Indexing... Wed Aug 28 16:50:13 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 16:59:47 2019 Input not indexed. Indexing... Wed Aug 28 17:02:36 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 17:09:44 2019 Input not indexed. Indexing... Wed Aug 28 17:11:46 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 17:17:24 2019 Input not indexed. Indexing... Wed Aug 28 17:19:36 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 17:25:41 2019 Input not indexed. Indexing... Wed Aug 28 17:27:21 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 17:32:14 2019 Input not indexed. Indexing... Wed Aug 28 17:34:12 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 17:39:45 2019 Input not indexed. Indexing... Wed Aug 28 17:42:29 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 17:49:35 2019 Input not indexed. Indexing... Wed Aug 28 17:52:42 2019 [mpileup] 1 samples in 1 input files /var/spool/slurm/d/job1240043/slurm_script: line 64: fg: no job control Begin flipping the strand of read 2 Wed Aug 28 18:00:40 2019 Input not indexed. Indexing... Wed Aug 28 18:04:44 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 18:14:30 2019 Input not indexed. Indexing... Wed Aug 28 18:20:04 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 18:32:02 2019 Input not indexed. Indexing... Wed Aug 28 18:37:05 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 18:48:24 2019 Input not indexed. Indexing... Wed Aug 28 18:53:17 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 19:04:14 2019 Input not indexed. Indexing... Wed Aug 28 19:09:28 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 19:21:20 2019 Input not indexed. Indexing... Wed Aug 28 19:26:08 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 19:36:57 2019 Input not indexed. Indexing... Wed Aug 28 19:41:17 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 19:51:19 2019 Input not indexed. Indexing... Wed Aug 28 19:55:56 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 20:06:32 2019 Input not indexed. Indexing... Wed Aug 28 20:11:30 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 20:22:18 2019 Input not indexed. Indexing... Wed Aug 28 20:27:11 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 20:37:58 2019 Input not indexed. Indexing... Wed Aug 28 20:42:04 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 20:51:32 2019 Input not indexed. Indexing... Wed Aug 28 20:56:09 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 21:06:41 2019 Input not indexed. Indexing... Wed Aug 28 21:09:52 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 21:17:06 2019 Input not indexed. Indexing... Wed Aug 28 21:21:09 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 21:29:27 2019 Input not indexed. Indexing... Wed Aug 28 21:32:38 2019 [mpileup] 1 samples in 1 input files Begin flipping the strand of read 2 Wed Aug 28 21:39:54 2019 Input not indexed. Indexing... Wed Aug 28 21:41:57 2019 [mpileup] 1 samples in 1 input files /var/spool/slurm/d/job1240043/slurm_script: line 79: fg: no job control /var/spool/slurm/d/job1240043/slurm_script: line 97: fg: no job control Filtering allc files using 8 node(s). Sat Aug 31 02:16:25 2019 Splitting allc files for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:17:40 2019 Running rms tests for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:17:41 2019 Splitting allc files for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:17:41 2019 Ran 8069 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_6.tsv Running rms tests for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:18:05 2019 Splitting allc files for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:18:05 2019 Ran 9999 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_1.tsv Ran 11896 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_0.tsv Ran 9987 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_4.tsv Ran 12613 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_2.tsv Ran 11607 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_7.tsv Ran 11331 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_3.tsv Ran 16011 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_5.tsv Ran 5874 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_2.tsv Ran 8963 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_0.tsv Running rms tests for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:18:28 2019 Splitting allc files for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:18:28 2019 Ran 5799 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_5.tsv Ran 8438 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_6.tsv Ran 9511 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_4.tsv Ran 9739 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_3.tsv Ran 8743 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_7.tsv Ran 2591 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_3.tsv Ran 7088 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_0.tsv Ran 7348 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_2.tsv Ran 8924 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_1.tsv Running rms tests for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:18:49 2019 Splitting allc files for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:18:49 2019 Ran 6420 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_5.tsv Ran 6604 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_4.tsv Ran 5788 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_7.tsv Ran 8047 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_6.tsv Ran 6111 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_1.tsv Ran 8744 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_0.tsv Ran 7309 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_3.tsv Ran 8919 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_2.tsv Running rms tests for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:19:12 2019 Splitting allc files for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:19:12 2019 Ran 7778 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_4.tsv Ran 9758 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_1.tsv Ran 6740 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_5.tsv Ran 6141 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_6.tsv Ran 4771 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_2.tsv Ran 5821 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_7.tsv Ran 4385 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_1.tsv Running rms tests for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:19:25 2019 Splitting allc files for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:19:25 2019 Ran 6096 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_4.tsv Ran 6055 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_0.tsv Ran 5057 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_6.tsv Ran 8013 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_3.tsv Ran 6159 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_5.tsv Ran 5619 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_7.tsv Ran 5235 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_1.tsv Ran 5323 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_0.tsv Running rms tests for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:19:40 2019 Splitting allc files for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:19:40 2019 Ran 6514 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_3.tsv Ran 5777 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_4.tsv Ran 7180 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_6.tsv Ran 4075 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_1.tsv Ran 7658 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_5.tsv Ran 7454 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_7.tsv Ran 5879 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_0.tsv Running rms tests for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:19:57 2019 Splitting allc files for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:19:57 2019 Ran 4634 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_3.tsv Ran 4559 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_4.tsv Ran 6215 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_2.tsv Ran 3792 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_5.tsv Ran 4451 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_7.tsv Ran 4385 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_6.tsv Ran 4577 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_2.tsv Ran 7234 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_1.tsv Ran 6420 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_0.tsv Running rms tests for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:20:16 2019 Splitting allc files for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:20:16 2019 Ran 5585 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_4.tsv Ran 8079 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_5.tsv Ran 8469 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_6.tsv Ran 8487 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_3.tsv Ran 2381 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_1.tsv Ran 3351 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_2.tsv Ran 4378 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_0.tsv Running rms tests for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:20:31 2019 Splitting allc files for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:20:31 2019 Ran 2223 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_7.tsv Ran 6209 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_7.tsv Ran 3617 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_6.tsv Ran 4631 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_3.tsv Ran 5876 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_5.tsv Ran 6388 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_4.tsv Ran 5971 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_1.tsv Ran 6834 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_0.tsv Ran 6968 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_2.tsv Running rms tests for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:20:51 2019 Splitting allc files for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:20:51 2019 Ran 5278 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_5.tsv Ran 5604 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_6.tsv Ran 6694 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_4.tsv Ran 6995 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_3.tsv Ran 2186 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_1.tsv Ran 4488 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_7.tsv Ran 6026 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_2.tsv Ran 6087 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_0.tsv Ran 5175 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_3.tsv Running rms tests for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:21:07 2019 Splitting allc files for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:21:07 2019 Ran 4985 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_5.tsv Ran 5482 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_6.tsv Ran 3936 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_2.tsv Ran 4506 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_7.tsv Ran 3690 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_4.tsv Ran 4940 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_1.tsv Running rms tests for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:21:21 2019 Splitting allc files for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:21:21 2019 Ran 6432 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_0.tsv Ran 7206 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_2.tsv Ran 4976 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_6.tsv Ran 6486 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_5.tsv Ran 7984 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_3.tsv Ran 5560 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_7.tsv Ran 4757 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_0.tsv Ran 4741 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_1.tsv Ran 4618 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_2.tsv Ran 4914 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_4.tsv Ran 4878 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_3.tsv Running rms tests for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:21:35 2019 Splitting allc files for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:21:35 2019 Ran 3488 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_4.tsv Ran 4232 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_6.tsv Ran 4199 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_7.tsv Ran 6300 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_5.tsv Ran 5924 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_0.tsv Ran 6196 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_3.tsv Running rms tests for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:21:52 2019 Splitting allc files for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:21:52 2019 Ran 6975 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_1.tsv Ran 4353 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_7.tsv Ran 7918 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_4.tsv Ran 7403 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_2.tsv Ran 3326 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_1.tsv Ran 8087 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_5.tsv Ran 2708 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_0.tsv Ran 8647 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_6.tsv Running rms tests for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:22:05 2019 Splitting allc files for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:22:05 2019 Ran 3891 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_3.tsv Ran 4763 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_2.tsv Ran 5098 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_5.tsv Ran 4436 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_4.tsv Ran 1851 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_0.tsv Ran 4070 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_7.tsv Ran 4693 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_6.tsv Running rms tests for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:22:14 2019 Splitting allc files for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:22:14 2019 Ran 4746 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_1.tsv Ran 2753 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_2.tsv Ran 3260 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_4.tsv Ran 4083 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_3.tsv Ran 3414 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_6.tsv Ran 4334 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_7.tsv Ran 4583 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_5.tsv Ran 3179 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_2.tsv Running rms tests for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:22:24 2019 Ran 4869 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_0.tsv Ran 2305 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_5.tsv Ran 3340 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_1.tsv Ran 3493 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_3.tsv Ran 5136 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_7.tsv Ran 2911 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_1.tsv Ran 3448 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_0.tsv Ran 2416 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_4.tsv Ran 5411 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_6.tsv Ran 3126 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_3.tsv Ran 2814 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_2.tsv Ran 6168 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_4.tsv Ran 1716 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_5.tsv Ran 1922 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_7.tsv Ran 2456 root mean square tests. Results in amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_6.tsv Merging sorted amb_AllTimes_DMR250bp_MCmax25_cov5x_rms_results.tsv files. Sat Aug 31 02:22:38 2019 Begin FDR Correction Sat Aug 31 02:23:49 2019 m0 estimate for iteration 0: 834740 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Sat Aug 31 02:23:50 2019 Begin Defining Windows Sat Aug 31 02:23:54 2019 Adding Methylation Levels Sat Aug 31 02:24:03 2019 Done Sat Aug 31 02:24:08 2019 /var/spool/slurm/d/job1240043/slurm_script: line 128: fg: no job control Filtering allc files using 8 node(s). Sat Aug 31 02:24:21 2019 Splitting allc files for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:25:37 2019 Running rms tests for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:25:38 2019 Splitting allc files for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:25:38 2019 Ran 12319 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_7.tsv Ran 12225 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_0.tsv Ran 13053 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_2.tsv Ran 12394 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_3.tsv Running rms tests for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:26:06 2019 Splitting allc files for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:26:06 2019 Ran 13317 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_1.tsv Ran 14115 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_5.tsv Ran 13774 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_6.tsv Ran 12871 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_4.tsv Ran 9060 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_4.tsv Ran 9546 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_0.tsv Ran 9257 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_2.tsv Running rms tests for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:26:29 2019 Splitting allc files for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:26:29 2019 Ran 9352 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_6.tsv Ran 9237 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_5.tsv Ran 10572 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_3.tsv Ran 9237 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_7.tsv Ran 7660 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_1.tsv Ran 6536 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_6.tsv Ran 7069 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_0.tsv Running rms tests for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:26:47 2019 Splitting allc files for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:26:47 2019 Ran 7164 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_4.tsv Ran 8511 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_5.tsv Ran 6939 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_3.tsv Ran 9329 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_1.tsv Ran 8590 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_2.tsv Ran 7270 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_7.tsv Ran 7408 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_0.tsv Ran 7441 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_5.tsv Running rms tests for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:27:05 2019 Splitting allc files for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:27:05 2019 Ran 8029 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_2.tsv Ran 8604 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_4.tsv Ran 8390 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_6.tsv Ran 8704 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_3.tsv Ran 9022 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_1.tsv Ran 5765 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_2.tsv Ran 5853 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_3.tsv Ran 8301 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_7.tsv Ran 5928 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_0.tsv Running rms tests for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:27:22 2019 Splitting allc files for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:27:22 2019 Ran 7053 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_1.tsv Ran 6657 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_4.tsv Ran 6896 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_6.tsv Ran 7050 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_5.tsv Ran 6965 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_7.tsv Ran 6466 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_2.tsv Ran 6315 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_0.tsv Running rms tests for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:27:39 2019 Splitting allc files for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:27:39 2019 Ran 7530 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_3.tsv Ran 7478 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_4.tsv Ran 6476 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_6.tsv Ran 7360 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_5.tsv Ran 7673 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_7.tsv Ran 5112 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_3.tsv Ran 4743 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_2.tsv Ran 5998 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_0.tsv Ran 5160 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_4.tsv Running rms tests for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:27:54 2019 Splitting allc files for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:27:54 2019 Ran 5489 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_5.tsv Ran 5841 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_1.tsv Ran 7057 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_1.tsv Ran 4824 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_7.tsv Ran 5942 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_6.tsv Ran 6878 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_1.tsv Ran 7728 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_2.tsv Running rms tests for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:28:10 2019 Splitting allc files for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:28:10 2019 Ran 7174 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_4.tsv Ran 8036 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_3.tsv Ran 7917 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_5.tsv Ran 9151 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_0.tsv Ran 7637 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_6.tsv Ran 4611 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_2.tsv Ran 4901 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_0.tsv Ran 7467 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_7.tsv Ran 4573 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_1.tsv Running rms tests for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:28:23 2019 Splitting allc files for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:28:23 2019 Ran 4464 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_3.tsv Ran 4820 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_4.tsv Ran 4464 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_5.tsv Ran 4912 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_6.tsv Ran 4530 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_7.tsv Ran 6405 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_1.tsv Ran 6019 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_3.tsv Ran 6828 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_0.tsv Running rms tests for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:28:39 2019 Splitting allc files for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:28:39 2019 Ran 7042 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_2.tsv Ran 7086 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_5.tsv Ran 7744 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_4.tsv Ran 6959 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_6.tsv Ran 4551 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_1.tsv Ran 7172 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_7.tsv Ran 5629 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_2.tsv Ran 5356 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_3.tsv Running rms tests for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:28:51 2019 Splitting allc files for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:28:51 2019 Ran 6192 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_0.tsv Ran 5486 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_6.tsv Ran 6122 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_5.tsv Ran 5025 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_7.tsv Ran 5794 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_2.tsv Ran 7124 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_0.tsv Ran 7006 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_1.tsv Running rms tests for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:29:07 2019 Splitting allc files for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:29:07 2019 Ran 7338 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_3.tsv Ran 6162 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_4.tsv Ran 6941 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_5.tsv Ran 5265 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_4.tsv Ran 6534 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_6.tsv Ran 6839 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_7.tsv Ran 5176 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_0.tsv Ran 4914 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_1.tsv Ran 5024 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_2.tsv Running rms tests for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:29:19 2019 Splitting allc files for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:29:19 2019 Ran 5890 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_3.tsv Ran 4798 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_6.tsv Ran 5967 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_5.tsv Ran 4910 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_7.tsv Ran 6822 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_4.tsv Ran 6946 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_2.tsv Running rms tests for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:29:37 2019 Splitting allc files for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:29:37 2019 Ran 7615 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_0.tsv Ran 7324 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_3.tsv Ran 8156 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_1.tsv Ran 8177 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_4.tsv Ran 8717 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_5.tsv Ran 7620 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_7.tsv Ran 4180 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_2.tsv Ran 4442 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_0.tsv Ran 8305 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_6.tsv Ran 5117 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_1.tsv Running rms tests for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:29:51 2019 Splitting allc files for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:29:51 2019 Ran 4634 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_3.tsv Ran 4760 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_4.tsv Ran 4947 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_5.tsv Ran 3434 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_1.tsv Ran 4829 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_6.tsv Ran 4637 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_7.tsv Ran 3804 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_3.tsv Running rms tests for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:30:01 2019 Splitting allc files for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:30:01 2019 Ran 3981 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_2.tsv Ran 5236 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_0.tsv Ran 4294 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_5.tsv Ran 5009 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_4.tsv Ran 3775 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_7.tsv Ran 3753 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_6.tsv Ran 4349 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_0.tsv Ran 3762 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_7.tsv Running rms tests for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:30:12 2019 Ran 3857 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_5.tsv Ran 5222 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_2.tsv Ran 5002 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_1.tsv Ran 5453 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_3.tsv Ran 5129 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_4.tsv Ran 5388 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_6.tsv Ran 2877 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_0.tsv Ran 3344 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_1.tsv Ran 2687 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_4.tsv Ran 3087 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_3.tsv Ran 2720 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_6.tsv Ran 2907 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_5.tsv Ran 3316 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_2.tsv Ran 2527 root mean square tests. Results in day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_7.tsv Merging sorted day10_AllpH_DMR250bp_MCmax25_cov5x_rms_results.tsv files. Sat Aug 31 02:30:23 2019 Begin FDR Correction Sat Aug 31 02:31:29 2019 m0 estimate for iteration 0: 947629 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Sat Aug 31 02:31:31 2019 Begin Defining Windows Sat Aug 31 02:31:35 2019 Adding Methylation Levels Sat Aug 31 02:31:43 2019 Done Sat Aug 31 02:31:49 2019 /var/spool/slurm/d/job1240043/slurm_script: line 155: fg: no job control Filtering allc files using 8 node(s). Sat Aug 31 02:31:49 2019 Splitting allc files for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:32:44 2019 Running rms tests for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:32:44 2019 Splitting allc files for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:32:44 2019 Ran 5948 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_7.tsv Ran 6679 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_1.tsv Ran 6235 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_2.tsv Running rms tests for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:32:57 2019 Splitting allc files for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:32:57 2019 Ran 6305 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_5.tsv Ran 6728 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_0.tsv Ran 6210 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_4.tsv Ran 6875 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_3.tsv Ran 7128 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_6.tsv Ran 4747 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_4.tsv Ran 4146 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_6.tsv Ran 5218 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_0.tsv Ran 4837 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_2.tsv Ran 4658 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_3.tsv Running rms tests for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:33:08 2019 Splitting allc files for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:33:08 2019 Ran 4600 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_5.tsv Ran 4863 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_7.tsv Ran 3959 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_1.tsv Ran 3613 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_0.tsv Ran 4256 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_2.tsv Running rms tests for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:33:17 2019 Splitting allc files for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:33:17 2019 Ran 3820 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_5.tsv Ran 3154 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_6.tsv Ran 4054 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_4.tsv Ran 3365 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_3.tsv Ran 3680 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_0.tsv Ran 3987 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_7.tsv Ran 4037 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_2.tsv Running rms tests for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:33:26 2019 Splitting allc files for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:33:26 2019 Ran 3795 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_5.tsv Ran 4259 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_4.tsv Ran 4497 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_1.tsv Ran 4414 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_3.tsv Ran 3915 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_6.tsv Ran 3468 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_2.tsv Ran 3310 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_1.tsv Ran 3692 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_7.tsv Ran 3130 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_0.tsv Ran 3527 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_4.tsv Running rms tests for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:33:35 2019 Splitting allc files for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:33:35 2019 Ran 3027 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_3.tsv Ran 3492 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_7.tsv Ran 3410 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_6.tsv Ran 3209 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_0.tsv Ran 3784 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_2.tsv Ran 3380 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_3.tsv Ran 3108 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_5.tsv Running rms tests for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:33:44 2019 Splitting allc files for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:33:44 2019 Ran 3259 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_4.tsv Ran 4869 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_1.tsv Ran 3557 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_7.tsv Ran 3705 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_6.tsv Ran 3763 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_5.tsv Ran 2894 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_0.tsv Ran 3207 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_1.tsv Running rms tests for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:33:53 2019 Splitting allc files for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:33:53 2019 Ran 2474 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_2.tsv Ran 2282 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_7.tsv Ran 2732 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_3.tsv Ran 2630 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_4.tsv Ran 3048 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_6.tsv Ran 2502 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_5.tsv Ran 3493 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_1.tsv Ran 4184 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_2.tsv Ran 3595 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_3.tsv Running rms tests for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:34:03 2019 Splitting allc files for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:34:03 2019 Ran 3659 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_4.tsv Ran 3898 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_6.tsv Ran 4041 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_5.tsv Ran 4278 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_0.tsv Ran 2484 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_4.tsv Ran 2148 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_2.tsv Ran 2143 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_5.tsv Ran 2523 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_0.tsv Running rms tests for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:34:09 2019 Splitting allc files for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:34:09 2019 Ran 2230 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_3.tsv Ran 3961 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_7.tsv Ran 2275 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_1.tsv Ran 2596 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_6.tsv Ran 2326 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_7.tsv Ran 3444 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_1.tsv Ran 3384 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_0.tsv Running rms tests for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:34:18 2019 Splitting allc files for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:34:18 2019 Ran 3778 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_2.tsv Ran 3145 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_3.tsv Ran 3696 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_5.tsv Ran 3820 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_4.tsv Ran 3623 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_6.tsv Ran 1978 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_1.tsv Ran 3020 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_2.tsv Ran 3268 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_7.tsv Ran 3023 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_0.tsv Running rms tests for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:34:24 2019 Splitting allc files for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:34:24 2019 Ran 2579 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_3.tsv Ran 2873 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_6.tsv Ran 2711 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_7.tsv Ran 2683 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_5.tsv Ran 3321 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_1.tsv Ran 3373 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_0.tsv Ran 3138 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_2.tsv Running rms tests for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:34:34 2019 Splitting allc files for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:34:34 2019 Ran 3341 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_5.tsv Ran 3131 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_4.tsv Ran 3719 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_3.tsv Ran 3037 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_7.tsv Ran 3113 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_6.tsv Ran 2864 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_0.tsv Ran 2699 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_1.tsv Ran 2821 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_2.tsv Ran 2996 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_3.tsv Running rms tests for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:34:41 2019 Splitting allc files for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:34:41 2019 Ran 2515 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_5.tsv Ran 2317 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_6.tsv Ran 3132 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_4.tsv Ran 2421 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_7.tsv Ran 3604 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_0.tsv Ran 3607 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_2.tsv Ran 4298 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_3.tsv Ran 3973 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_5.tsv Running rms tests for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:34:53 2019 Splitting allc files for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:34:53 2019 Ran 4468 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_4.tsv Ran 4149 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_1.tsv Ran 2625 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_4.tsv Ran 3256 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_7.tsv Ran 2024 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_2.tsv Ran 2513 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_1.tsv Ran 4689 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_6.tsv Running rms tests for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:35:01 2019 Splitting allc files for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:35:01 2019 Ran 2199 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_0.tsv Ran 2257 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_4.tsv Ran 2758 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_3.tsv Ran 2840 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_5.tsv Ran 2129 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_6.tsv Ran 1936 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_1.tsv Ran 2202 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_7.tsv Ran 2082 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_3.tsv Running rms tests for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:35:07 2019 Splitting allc files for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:35:07 2019 Ran 2504 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_4.tsv Ran 2049 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_2.tsv Ran 2218 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_5.tsv Ran 1801 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_7.tsv Ran 2006 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_0.tsv Ran 1689 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_6.tsv Ran 2654 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_0.tsv Ran 2321 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_3.tsv Ran 2573 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_2.tsv Ran 2267 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_5.tsv Running rms tests for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:35:14 2019 Ran 2743 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_6.tsv Ran 2798 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_4.tsv Ran 2426 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_1.tsv Ran 2005 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_7.tsv Ran 1276 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_0.tsv Ran 1497 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_4.tsv Ran 1389 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_3.tsv Ran 1291 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_6.tsv Ran 1663 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_1.tsv Ran 1513 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_5.tsv Ran 1357 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_7.tsv Ran 2062 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_2.tsv Ran 3252 root mean square tests. Results in day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_1.tsv Merging sorted day135_AllpH_DMR250bp_MCmax25_cov5x_rms_results.tsv files. Sat Aug 31 02:35:21 2019 Begin FDR Correction Sat Aug 31 02:35:55 2019 m0 estimate for iteration 0: 475201 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Sat Aug 31 02:35:56 2019 Begin Defining Windows Sat Aug 31 02:36:00 2019 Adding Methylation Levels Sat Aug 31 02:36:04 2019 Done Sat Aug 31 02:36:07 2019 /var/spool/slurm/d/job1240043/slurm_script: line 181: fg: no job control Filtering allc files using 8 node(s). Sat Aug 31 02:36:07 2019 Splitting allc files for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:37:41 2019 Running rms tests for chromosome PGA_scaffold1__77_contigs__length_89643857 Sat Aug 31 02:37:41 2019 Splitting allc files for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:37:41 2019 Ran 7991 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_6.tsv Running rms tests for chromosome PGA_scaffold2__36_contigs__length_69596280 Sat Aug 31 02:38:10 2019 Splitting allc files for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:38:10 2019 Ran 10502 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_1.tsv Ran 11165 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_7.tsv Ran 11982 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_0.tsv Ran 10266 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_4.tsv Ran 11511 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_3.tsv Ran 12756 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_2.tsv Ran 16053 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold1__77_contigs__length_89643857_chunk_5.tsv Ran 8554 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_0.tsv Ran 5773 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_2.tsv Running rms tests for chromosome PGA_scaffold3__111_contigs__length_57743597 Sat Aug 31 02:38:36 2019 Splitting allc files for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:38:36 2019 Ran 6135 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_5.tsv Ran 9693 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_4.tsv Ran 8739 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_6.tsv Ran 9750 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_3.tsv Ran 8712 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_7.tsv Ran 6903 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_0.tsv Ran 8751 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_1.tsv Ran 2566 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_3.tsv Running rms tests for chromosome PGA_scaffold4__129_contigs__length_65288255 Sat Aug 31 02:39:04 2019 Splitting allc files for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:39:04 2019 Ran 7389 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_2.tsv Ran 6374 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_5.tsv Ran 6641 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_4.tsv Ran 5582 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_7.tsv Ran 7768 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold3__111_contigs__length_57743597_chunk_6.tsv Ran 5901 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_1.tsv Ran 8445 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_0.tsv Ran 8660 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_2.tsv Ran 7201 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_3.tsv Running rms tests for chromosome PGA_scaffold5__109_contigs__length_67248332 Sat Aug 31 02:39:33 2019 Splitting allc files for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:39:33 2019 Ran 6388 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_5.tsv Ran 7428 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_4.tsv Ran 5875 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_6.tsv Ran 4740 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_2.tsv Ran 4296 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_1.tsv Ran 5667 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold4__129_contigs__length_65288255_chunk_7.tsv Running rms tests for chromosome PGA_scaffold6__104_contigs__length_61759565 Sat Aug 31 02:39:51 2019 Splitting allc files for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:39:51 2019 Ran 9305 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold2__36_contigs__length_69596280_chunk_1.tsv Ran 6011 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_0.tsv Ran 6024 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_4.tsv Ran 7658 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_3.tsv Ran 5739 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_7.tsv Ran 5313 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_6.tsv Ran 6082 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold5__109_contigs__length_67248332_chunk_5.tsv Ran 5225 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_0.tsv Ran 5104 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_1.tsv Running rms tests for chromosome PGA_scaffold7__69_contigs__length_43120122 Sat Aug 31 02:40:10 2019 Splitting allc files for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:40:10 2019 Ran 5585 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_4.tsv Ran 6585 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_3.tsv Ran 3911 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_1.tsv Ran 6970 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_6.tsv Ran 7509 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_5.tsv Ran 7192 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_7.tsv Ran 5760 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_0.tsv Ran 4435 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_3.tsv Running rms tests for chromosome PGA_scaffold8__63_contigs__length_61151155 Sat Aug 31 02:40:31 2019 Splitting allc files for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:40:31 2019 Ran 6043 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_2.tsv Ran 4501 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_4.tsv Ran 4233 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_6.tsv Ran 3706 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_5.tsv Ran 4589 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold7__69_contigs__length_43120122_chunk_7.tsv Ran 4565 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_2.tsv Ran 7297 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_1.tsv Ran 6503 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_0.tsv Running rms tests for chromosome PGA_scaffold9__45_contigs__length_38581958 Sat Aug 31 02:40:54 2019 Splitting allc files for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:40:54 2019 Ran 5405 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_4.tsv Ran 8323 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_3.tsv Ran 7959 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_5.tsv Ran 8292 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_6.tsv Ran 2249 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_1.tsv Ran 4356 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_0.tsv Ran 3770 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold6__104_contigs__length_61759565_chunk_2.tsv Ran 3216 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_2.tsv Ran 5924 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold8__63_contigs__length_61151155_chunk_7.tsv Running rms tests for chromosome PGA_scaffold10__49_contigs__length_53961475 Sat Aug 31 02:41:12 2019 Splitting allc files for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:41:12 2019 Ran 2247 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_7.tsv Ran 3619 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_6.tsv Ran 4493 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_3.tsv Ran 6353 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_4.tsv Ran 5754 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold9__45_contigs__length_38581958_chunk_5.tsv Ran 6152 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_1.tsv Ran 7074 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_2.tsv Ran 6862 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_0.tsv Running rms tests for chromosome PGA_scaffold11__79_contigs__length_51449921 Sat Aug 31 02:41:34 2019 Splitting allc files for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:41:34 2019 Ran 5194 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_5.tsv Ran 4366 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_7.tsv Ran 6946 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_3.tsv Ran 2151 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_1.tsv Ran 5501 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_6.tsv Ran 6895 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold10__49_contigs__length_53961475_chunk_4.tsv Running rms tests for chromosome PGA_scaffold12__71_contigs__length_50438331 Sat Aug 31 02:41:45 2019 Splitting allc files for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:41:45 2019 Ran 5951 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_2.tsv Ran 5985 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_0.tsv Ran 5020 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_3.tsv Ran 4510 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_7.tsv Ran 4859 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_5.tsv Ran 5344 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_6.tsv Ran 6373 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_0.tsv Ran 4927 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_1.tsv Ran 3710 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_4.tsv Running rms tests for chromosome PGA_scaffold13__52_contigs__length_44396874 Sat Aug 31 02:42:05 2019 Splitting allc files for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:42:05 2019 Ran 6855 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_2.tsv Ran 4907 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_6.tsv Ran 6514 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_5.tsv Ran 8008 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_3.tsv Ran 4570 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_0.tsv Ran 4448 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_1.tsv Ran 5509 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold12__71_contigs__length_50438331_chunk_7.tsv Ran 4527 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_2.tsv Running rms tests for chromosome PGA_scaffold14__91_contigs__length_45393038 Sat Aug 31 02:42:23 2019 Splitting allc files for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:42:23 2019 Ran 4715 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_3.tsv Ran 5146 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_4.tsv Ran 4232 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_6.tsv Ran 4148 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_7.tsv Ran 6255 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold13__52_contigs__length_44396874_chunk_5.tsv Ran 3482 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold11__79_contigs__length_51449921_chunk_4.tsv Ran 5890 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_0.tsv Running rms tests for chromosome PGA_scaffold15__101_contigs__length_47938513 Sat Aug 31 02:42:45 2019 Splitting allc files for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:42:45 2019 Ran 6256 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_3.tsv Ran 6692 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_1.tsv Ran 7011 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_2.tsv Ran 7782 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_5.tsv Ran 3988 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_7.tsv Ran 8020 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_4.tsv Ran 3226 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_1.tsv Ran 2531 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_0.tsv Ran 8679 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold14__91_contigs__length_45393038_chunk_6.tsv Running rms tests for chromosome PGA_scaffold16__33_contigs__length_31980953 Sat Aug 31 02:43:02 2019 Splitting allc files for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:43:02 2019 Ran 3761 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_3.tsv Ran 4713 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_2.tsv Ran 1851 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_0.tsv Ran 4310 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_4.tsv Ran 4820 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_6.tsv Ran 4009 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_7.tsv Ran 4928 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold15__101_contigs__length_47938513_chunk_5.tsv Ran 2707 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_2.tsv Running rms tests for chromosome PGA_scaffold17__51_contigs__length_34923512 Sat Aug 31 02:43:15 2019 Splitting allc files for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:43:15 2019 Ran 4563 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_1.tsv Ran 3957 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_3.tsv Ran 3433 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_4.tsv Ran 3292 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_6.tsv Ran 4404 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_7.tsv Ran 4394 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold16__33_contigs__length_31980953_chunk_5.tsv Ran 3076 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_2.tsv Running rms tests for chromosome PGA_scaffold18__69_contigs__length_27737463 Sat Aug 31 02:43:27 2019 Ran 3217 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_1.tsv Ran 4777 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_0.tsv Ran 2204 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_5.tsv Ran 3360 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_3.tsv Ran 4904 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_7.tsv Ran 2845 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_1.tsv Ran 3629 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_0.tsv Ran 5356 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_6.tsv Ran 2347 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_4.tsv Ran 6108 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold17__51_contigs__length_34923512_chunk_4.tsv Ran 3146 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_3.tsv Ran 1707 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_5.tsv Ran 2865 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_2.tsv Ran 1894 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_7.tsv Ran 2299 root mean square tests. Results in day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results_for_PGA_scaffold18__69_contigs__length_27737463_chunk_6.tsv Merging sorted day145_AllpH_DMR250bp_MCmax25_cov5x_rms_results.tsv files. Sat Aug 31 02:43:46 2019 Begin FDR Correction Sat Aug 31 02:45:13 2019 m0 estimate for iteration 0: 824049 Histogram FDR correction did not converge. Using the smallest p-value 0.0003333333333333333 as cutoff. Calculating Residual Cutoff Sat Aug 31 02:45:15 2019 Begin Defining Windows Sat Aug 31 02:45:18 2019 Adding Methylation Levels Sat Aug 31 02:45:29 2019 Done Sat Aug 31 02:45:34 2019