File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.bam 16541499 7025362 8039389 1476728 20 1875252 5150110 103331667 4086624 10383710 624807 21368446 2760965 64107115 EPI-206_S27_L004_R1_001_val_1_bismark_bt2_pe.bam 20931018 9918239 9026731 1986027 21 2423092 7495147 155778901 6079013 15472822 928079 32432818 4316185 96549984 EPI-214_S30_L004_R1_001_val_1_bismark_bt2_pe.bam 28660043 13828640 12337643 2493746 14 3695743 10132897 219999425 7962551 22256008 1195467 45016568 5188264 138380567 EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.bam 21150005 10236936 8937067 1975978 24 3030160 7206776 153126104 6350237 14417738 939969 31452326 4316105 95649729 EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.bam 15670592 7811982 6437579 1421013 18 2608881 5203101 113239580 4266656 10689611 745451 22638518 5486351 69412993 EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.bam 16300374 7892255 6884123 1523978 18 2308469 5583786 119677841 4584474 11342306 781930 24097448 5079039 73792644 EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.bam 11133150 5810273 4332142 990721 14 1616015 4194258 93695995 3724305 8646879 621189 18759074 4477609 57466939 EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.bam 13531234 6848668 5415876 1266681 9 1928180 4920488 107719384 4102299 10164932 701005 21470747 5113731 66166670