Total number of alignments analysed in /gscratch/scrubbed/strigg/analyses/20190806_v074/EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.bam:	6848668
Total number duplicated alignments removed:	1928180 (28.15%)
Duplicated alignments were found at:	1172653 different position(s)

Total count of deduplicated leftover sequences: 4920488 (71.85% of total)