CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 73591 108786 40.35 182377 2 70186 119118 37.08 189304 3 67963 106544 38.95 174507 4 71718 89028 44.62 160746 5 69367 77972 47.08 147339 6 70230 66221 51.47 136451 7 78319 67827 53.59 146146 8 38220 75874 33.50 114094 9 33522 70120 32.34 103642 10 33944 67563 33.44 101507 11 35888 70006 33.89 105894 12 35026 71080 33.01 106106 13 34457 73908 31.80 108365 14 32934 74703 30.60 107637 15 32801 75124 30.39 107925 16 30018 74500 28.72 104518 17 28726 72435 28.40 101161 18 29731 75201 28.33 104932 19 28997 75313 27.80 104310 20 29412 76097 27.88 105509 21 29126 76531 27.57 105657 22 28454 76346 27.15 104800 23 28915 75285 27.75 104200 24 27773 75820 26.81 103593 25 27642 75187 26.88 102829 26 27874 75672 26.92 103546 27 27817 76881 26.57 104698 28 28704 76164 27.37 104868 29 27612 77751 26.21 105363 30 27388 76621 26.33 104009 31 27832 75233 27.00 103065 32 27486 74409 26.97 101895 33 27345 74134 26.95 101479 34 28338 74044 27.68 102382 35 27628 75047 26.91 102675 36 27637 76623 26.51 104260 37 26371 73880 26.30 100251 38 26456 73849 26.38 100305 39 27118 75258 26.49 102376 40 26806 73575 26.70 100381 41 26483 73380 26.52 99863 42 27198 75342 26.52 102540 43 26803 74691 26.41 101494 44 26502 74122 26.34 100624 45 27171 74004 26.86 101175 46 27187 74147 26.83 101334 47 26762 73132 26.79 99894 48 26259 73744 26.26 100003 49 27279 74137 26.90 101416 50 26638 75228 26.15 101866 51 26639 74349 26.38 100988 52 27204 76803 26.16 104007 53 26371 73552 26.39 99923 54 25931 72715 26.29 98646 55 25791 71072 26.63 96863 56 26147 70739 26.99 96886 57 26176 72159 26.62 98335 58 27178 72638 27.23 99816 59 27225 72062 27.42 99287 60 26782 72034 27.10 98816 61 26694 71268 27.25 97962 62 26361 71514 26.93 97875 63 25698 70266 26.78 95964 64 25746 69978 26.90 95724 65 25833 68760 27.31 94593 66 26174 69493 27.36 95667 67 25904 67682 27.68 93586 68 25491 67485 27.42 92976 69 24904 66807 27.15 91711 70 24419 66656 26.81 91075 71 24046 65087 26.98 89133 72 23812 64936 26.83 88748 73 23718 64079 27.01 87797 74 23075 63631 26.61 86706 75 22813 63532 26.42 86345 76 22582 62574 26.52 85156 77 22912 61867 27.03 84779 78 22874 62464 26.80 85338 79 22305 61474 26.62 83779 80 21821 60850 26.39 82671 81 21569 60391 26.32 81960 82 21077 59647 26.11 80724 83 21417 59788 26.37 81205 84 21368 59241 26.51 80609 85 21240 58192 26.74 79432 86 20608 57211 26.48 77819 87 19879 57309 25.75 77188 88 20022 57274 25.90 77296 89 19825 55929 26.17 75754 90 19674 55764 26.08 75438 91 19139 54896 25.85 74035 92 18953 54512 25.80 73465 93 18897 54448 25.76 73345 94 18750 53721 25.87 72471 95 18519 53393 25.75 71912 96 18666 53304 25.94 71970 97 17497 51136 25.49 68633 98 17109 48674 26.01 65783 99 13198 38006 25.78 51204 100 17433 47762 26.74 65195 101 16894 49324 25.51 66218 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 98378 154206 38.95 252584 2 57446 146613 28.15 204059 3 25950 141524 15.49 167474 4 15517 140814 9.93 156331 5 10583 128128 7.63 138711 6 10563 124128 7.84 134691 7 7165 153712 4.45 160877 8 4334 165660 2.55 169994 9 3373 157391 2.10 160764 10 3305 152853 2.12 156158 11 4006 155034 2.52 159040 12 3655 154956 2.30 158611 13 3321 149774 2.17 153095 14 3324 149660 2.17 152984 15 3244 154091 2.06 157335 16 2872 154128 1.83 157000 17 3695 151835 2.38 155530 18 2905 152340 1.87 155245 19 2682 152229 1.73 154911 20 2924 160419 1.79 163343 21 2745 161698 1.67 164443 22 2931 159508 1.80 162439 23 3024 161084 1.84 164108 24 2887 163432 1.74 166319 25 2866 158439 1.78 161305 26 4456 159796 2.71 164252 27 2754 162277 1.67 165031 28 2668 161959 1.62 164627 29 3630 163851 2.17 167481 30 2508 164077 1.51 166585 31 2624 160941 1.60 163565 32 2546 162620 1.54 165166 33 2759 163370 1.66 166129 34 2875 160481 1.76 163356 35 3837 160881 2.33 164718 36 2849 162074 1.73 164923 37 2751 156157 1.73 158908 38 3692 160317 2.25 164009 39 2718 159811 1.67 162529 40 2660 159157 1.64 161817 41 2565 159731 1.58 162296 42 2527 159627 1.56 162154 43 2515 157254 1.57 159769 44 2543 159941 1.57 162484 45 2566 159692 1.58 162258 46 2693 156956 1.69 159649 47 2964 158860 1.83 161824 48 2557 162382 1.55 164939 49 2706 157866 1.69 160572 50 3044 157285 1.90 160329 51 2570 160208 1.58 162778 52 2696 159195 1.67 161891 53 2804 157560 1.75 160364 54 3011 159897 1.85 162908 55 2778 157367 1.73 160145 56 3087 158769 1.91 161856 57 3035 158352 1.88 161387 58 2910 157264 1.82 160174 59 3147 157571 1.96 160718 60 2968 158075 1.84 161043 61 3103 154884 1.96 157987 62 3294 155340 2.08 158634 63 3290 153977 2.09 157267 64 3397 153222 2.17 156619 65 4469 151932 2.86 156401 66 3183 149705 2.08 152888 67 3256 145886 2.18 149142 68 3878 146668 2.58 150546 69 2960 146380 1.98 149340 70 2831 142856 1.94 145687 71 2896 141975 2.00 144871 72 2921 142692 2.01 145613 73 2957 140654 2.06 143611 74 3569 139731 2.49 143300 75 2828 139857 1.98 142685 76 2789 135303 2.02 138092 77 3530 135584 2.54 139114 78 2759 133280 2.03 136039 79 2786 130457 2.09 133243 80 2725 129759 2.06 132484 81 2720 128228 2.08 130948 82 2683 125675 2.09 128358 83 2777 127842 2.13 130619 84 2642 128010 2.02 130652 85 2751 124804 2.16 127555 86 2980 125122 2.33 128102 87 2625 125071 2.06 127696 88 2529 122847 2.02 125376 89 2833 121515 2.28 124348 90 2579 121399 2.08 123978 91 2699 119304 2.21 122003 92 2737 118997 2.25 121734 93 2958 118107 2.44 121065 94 2802 115573 2.37 118375 95 3019 114699 2.56 117718 96 2778 113636 2.39 116414 97 2890 105017 2.68 107907 98 2768 96774 2.78 99542 99 1471 62119 2.31 63590 100 2148 63538 3.27 65686 101 3842 104709 3.54 108551 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 149496 220029 40.46 369525 2 101347 234635 30.16 335982 3 67360 261294 20.50 328654 4 65526 275174 19.23 340700 5 64885 322073 16.77 386958 6 55524 351794 13.63 407318 7 40197 439488 8.38 479685 8 39225 475015 7.63 514240 9 29950 439163 6.38 469113 10 29656 427689 6.48 457345 11 39057 428971 8.35 468028 12 32475 432512 6.98 464987 13 36597 442464 7.64 479061 14 41627 452749 8.42 494376 15 34636 464140 6.94 498776 16 34118 470144 6.77 504262 17 41075 472972 7.99 514047 18 33407 490323 6.38 523730 19 33236 499341 6.24 532577 20 40014 516517 7.19 556531 21 33694 517489 6.11 551183 22 37213 517261 6.71 554474 23 40642 517801 7.28 558443 24 34391 517007 6.24 551398 25 37532 518997 6.74 556529 26 41340 524325 7.31 565665 27 34710 525401 6.20 560111 28 34434 529308 6.11 563742 29 41199 527446 7.25 568645 30 34558 522317 6.21 556875 31 35606 516017 6.45 551623 32 38791 518265 6.96 557056 33 34720 518360 6.28 553080 34 40166 523112 7.13 563278 35 41029 517432 7.35 558461 36 35085 524754 6.27 559839 37 33702 520155 6.08 553857 38 41198 521565 7.32 562763 39 33486 517658 6.08 551144 40 34040 516822 6.18 550862 41 40476 518539 7.24 559015 42 35526 523514 6.35 559040 43 39086 517678 7.02 556764 44 40357 522029 7.18 562386 45 36452 518263 6.57 554715 46 34752 519438 6.27 554190 47 39173 518482 7.02 557655 48 32693 517271 5.94 549964 49 33360 509981 6.14 543341 50 38527 509765 7.03 548292 51 32857 505029 6.11 537886 52 35942 502484 6.68 538426 53 39400 498904 7.32 538304 54 33968 500142 6.36 534110 55 34854 496068 6.56 530922 56 39484 495923 7.37 535407 57 32514 500320 6.10 532834 58 33119 496822 6.25 529941 59 38555 497390 7.19 535945 60 32277 490808 6.17 523085 61 35346 486789 6.77 522135 62 37343 481046 7.20 518389 63 32655 475756 6.42 508411 64 34886 473845 6.86 508731 65 36549 468538 7.24 505087 66 31700 463835 6.40 495535 67 31185 460944 6.34 492129 68 35401 457059 7.19 492460 69 30410 454703 6.27 485113 70 31207 450017 6.48 481224 71 34988 449120 7.23 484108 72 30955 446614 6.48 477569 73 34489 439157 7.28 473646 74 34965 437499 7.40 472464 75 30755 432545 6.64 463300 76 30153 430575 6.54 460728 77 34879 425078 7.58 459957 78 28578 422405 6.34 450983 79 29197 417839 6.53 447036 80 33746 416084 7.50 449830 81 29895 409325 6.81 439220 82 32115 404107 7.36 436222 83 33904 404433 7.73 438337 84 30179 400227 7.01 430406 85 28255 394082 6.69 422337 86 31941 390137 7.57 422078 87 27134 387302 6.55 414436 88 26879 383475 6.55 410354 89 31562 377943 7.71 409505 90 27032 377105 6.69 404137 91 28479 371504 7.12 399983 92 30305 370466 7.56 400771 93 26863 367583 6.81 394446 94 26379 363507 6.77 389886 95 30255 358095 7.79 388350 96 25283 352518 6.69 377801 97 24565 343416 6.68 367981 98 27153 320916 7.80 348069 99 15264 223196 6.40 238460 100 17258 198947 7.98 216205 101 26524 324342 7.56 350866 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 65290 72212 47.48 137502 2 56087 60470 48.12 116557 3 59642 67864 46.78 127506 4 54509 74025 42.41 128534 5 23952 96156 19.94 120108 6 14837 53257 21.79 68094 7 12713 55729 18.57 68442 8 13251 51024 20.62 64275 9 11328 45059 20.09 56387 10 12931 49033 20.87 61964 11 13808 48608 22.12 62416 12 13280 47321 21.91 60601 13 13848 45197 23.45 59045 14 14178 47001 23.17 61179 15 13658 43157 24.04 56815 16 12890 40214 24.27 53104 17 15928 44844 26.21 60772 18 15317 44126 25.77 59443 19 14310 42747 25.08 57057 20 13489 41459 24.55 54948 21 14226 40289 26.10 54515 22 13841 41370 25.07 55211 23 13035 39591 24.77 52626 24 12247 37069 24.83 49316 25 13703 40115 25.46 53818 26 12830 37535 25.47 50365 27 13999 38692 26.57 52691 28 12593 35842 26.00 48435 29 13212 38265 25.67 51477 30 12504 35109 26.26 47613 31 12302 36061 25.44 48363 32 11754 34197 25.58 45951 33 13358 35715 27.22 49073 34 12562 37188 25.25 49750 35 15244 39505 27.84 54749 36 12825 33871 27.46 46696 37 12869 35202 26.77 48071 38 11441 33525 25.44 44966 39 11920 33485 26.25 45405 40 12837 33738 27.56 46575 41 11624 33350 25.85 44974 42 11885 34165 25.81 46050 43 11489 32395 26.18 43884 44 11011 31688 25.79 42699 45 13486 36349 27.06 49835 46 10505 29964 25.96 40469 47 10640 30924 25.60 41564 48 10869 30303 26.40 41172 49 10281 31883 24.38 42164 50 9895 28606 25.70 38501 51 10068 27895 26.52 37963 52 9965 28516 25.90 38481 53 10303 28449 26.59 38752 54 9905 28369 25.88 38274 55 9894 27210 26.67 37104 56 9155 27274 25.13 36429 57 9466 27017 25.95 36483 58 9211 26593 25.73 35804 59 9054 24925 26.65 33979 60 9033 26313 25.56 35346 61 7911 24627 24.31 32538 62 8250 23093 26.32 31343 63 9020 23573 27.67 32593 64 8306 23167 26.39 31473 65 7982 22378 26.29 30360 66 8764 23731 26.97 32495 67 7844 24029 24.61 31873 68 8744 24987 25.92 33731 69 7695 21527 26.33 29222 70 7671 21673 26.14 29344 71 7795 21160 26.92 28955 72 7311 20365 26.42 27676 73 7569 20740 26.74 28309 74 6752 20186 25.06 26938 75 6665 20269 24.75 26934 76 7036 19658 26.36 26694 77 6770 19247 26.02 26017 78 6836 19058 26.40 25894 79 6715 18893 26.22 25608 80 6541 18539 26.08 25080 81 6427 18348 25.94 24775 82 6435 18575 25.73 25010 83 6556 17798 26.92 24354 84 7182 19201 27.22 26383 85 6197 17629 26.01 23826 86 6154 17397 26.13 23551 87 6102 16885 26.55 22987 88 6013 17055 26.07 23068 89 6409 17664 26.62 24073 90 6297 17346 26.63 23643 91 5930 16794 26.10 22724 92 5707 16707 25.46 22414 93 5879 16618 26.13 22497 94 5885 16476 26.32 22361 95 5944 16036 27.04 21980 96 5706 16180 26.07 21886 97 6381 17402 26.83 23783 98 5549 15761 26.04 21310 99 5068 0 100.00 5068 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21051 90769 18.83 111820 2 19948 89366 18.25 109314 3 18813 91583 17.04 110396 4 20511 101374 16.83 121885 5 3310 180974 1.80 184284 6 2448 222634 1.09 225082 7 1602 124235 1.27 125837 8 1577 133516 1.17 135093 9 1536 109430 1.38 110966 10 1500 104477 1.42 105977 11 2135 145369 1.45 147504 12 1620 111601 1.43 113221 13 1563 112113 1.37 113676 14 1539 105718 1.43 107257 15 1587 101810 1.53 103397 16 1447 95110 1.50 96557 17 1649 102975 1.58 104624 18 2439 91304 2.60 93743 19 1635 88776 1.81 90411 20 1674 88675 1.85 90349 21 2524 84362 2.90 86886 22 1697 94446 1.77 96143 23 1565 92157 1.67 93722 24 1444 82111 1.73 83555 25 1508 83224 1.78 84732 26 1678 89424 1.84 91102 27 1484 81567 1.79 83051 28 1407 78651 1.76 80058 29 1507 84423 1.75 85930 30 1637 80393 2.00 82030 31 1352 78507 1.69 79859 32 1371 78489 1.72 79860 33 1591 96504 1.62 98095 34 1375 77408 1.75 78783 35 1488 80231 1.82 81719 36 1416 80670 1.73 82086 37 1314 72738 1.77 74052 38 1512 79205 1.87 80717 39 1533 74917 2.01 76450 40 1371 72436 1.86 73807 41 1374 68964 1.95 70338 42 1492 65126 2.24 66618 43 1524 68300 2.18 69824 44 1311 66496 1.93 67807 45 1276 61673 2.03 62949 46 1281 61815 2.03 63096 47 1368 64316 2.08 65684 48 1391 61160 2.22 62551 49 1354 64132 2.07 65486 50 1515 62098 2.38 63613 51 1423 57042 2.43 58465 52 1355 55954 2.36 57309 53 1550 62994 2.40 64544 54 1318 58213 2.21 59531 55 1215 57887 2.06 59102 56 1300 57212 2.22 58512 57 1850 54994 3.25 56844 58 1206 55059 2.14 56265 59 1079 54346 1.95 55425 60 1352 53755 2.45 55107 61 910 52433 1.71 53343 62 952 54707 1.71 55659 63 854 55134 1.53 55988 64 828 49524 1.64 50352 65 819 51721 1.56 52540 66 760 47813 1.56 48573 67 854 52316 1.61 53170 68 769 51481 1.47 52250 69 882 49725 1.74 50607 70 694 49408 1.39 50102 71 740 50669 1.44 51409 72 749 46527 1.58 47276 73 699 45698 1.51 46397 74 690 47837 1.42 48527 75 678 45832 1.46 46510 76 636 43582 1.44 44218 77 735 46766 1.55 47501 78 690 44408 1.53 45098 79 633 43180 1.44 43813 80 652 42500 1.51 43152 81 679 41184 1.62 41863 82 583 41143 1.40 41726 83 656 42125 1.53 42781 84 664 40041 1.63 40705 85 644 44915 1.41 45559 86 685 39633 1.70 40318 87 628 39979 1.55 40607 88 636 37415 1.67 38051 89 700 40693 1.69 41393 90 768 39852 1.89 40620 91 636 40842 1.53 41478 92 640 38711 1.63 39351 93 645 37702 1.68 38347 94 562 36845 1.50 37407 95 686 38102 1.77 38788 96 854 36168 2.31 37022 97 641 35270 1.78 35911 98 541 35253 1.51 35794 99 681 0 100.00 681 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47844 124918 27.69 172762 2 43947 102182 30.07 146129 3 47061 103250 31.31 150311 4 48063 101335 32.17 149398 5 20466 208411 8.94 228877 6 20171 278091 6.76 298262 7 20263 370220 5.19 390483 8 19114 362556 5.01 381670 9 22344 339914 6.17 362258 10 19918 350411 5.38 370329 11 19967 345430 5.46 365397 12 18967 320137 5.59 339104 13 18719 335289 5.29 354008 14 18076 335962 5.11 354038 15 17783 347172 4.87 364955 16 16341 331038 4.70 347379 17 17365 333358 4.95 350723 18 16865 331391 4.84 348256 19 15691 306278 4.87 321969 20 17545 325436 5.12 342981 21 17305 306057 5.35 323362 22 17533 295660 5.60 313193 23 17160 289294 5.60 306454 24 15995 277352 5.45 293347 25 17599 276475 5.98 294074 26 16287 273605 5.62 289892 27 17077 297076 5.44 314153 28 15712 279514 5.32 295226 29 16188 276520 5.53 292708 30 17599 266092 6.20 283691 31 16276 259302 5.91 275578 32 15616 251782 5.84 267398 33 17338 247775 6.54 265113 34 16659 248709 6.28 265368 35 16564 256211 6.07 272775 36 15075 254785 5.59 269860 37 14562 250920 5.49 265482 38 15633 264329 5.58 279962 39 16013 239417 6.27 255430 40 15272 251417 5.73 266689 41 15532 234824 6.20 250356 42 15457 241124 6.02 256581 43 15226 225547 6.32 240773 44 14173 224280 5.94 238453 45 14526 222915 6.12 237441 46 13382 225616 5.60 238998 47 13644 220549 5.83 234193 48 13817 214214 6.06 228031 49 12847 217800 5.57 230647 50 13293 213551 5.86 226844 51 13372 207628 6.05 221000 52 12590 195076 6.06 207666 53 11896 197168 5.69 209064 54 11544 190029 5.73 201573 55 11540 198992 5.48 210532 56 11487 191900 5.65 203387 57 11222 198229 5.36 209451 58 10448 191494 5.17 201942 59 11223 183175 5.77 194398 60 11028 187426 5.56 198454 61 11120 177795 5.89 188915 62 10333 177910 5.49 188243 63 10220 180057 5.37 190277 64 10524 173913 5.71 184437 65 9731 177031 5.21 186762 66 10119 169038 5.65 179157 67 9382 170634 5.21 180016 68 9355 176537 5.03 185892 69 10300 172181 5.64 182481 70 9268 165088 5.32 174356 71 9235 161985 5.39 171220 72 9881 161253 5.77 171134 73 9509 157835 5.68 167344 74 8951 159051 5.33 168002 75 8804 158572 5.26 167376 76 8565 152405 5.32 160970 77 9059 151701 5.64 160760 78 9189 154914 5.60 164103 79 8736 156132 5.30 164868 80 8983 149553 5.67 158536 81 9198 150115 5.77 159313 82 8698 148629 5.53 157327 83 8139 147047 5.24 155186 84 8510 147388 5.46 155898 85 7999 143897 5.27 151896 86 8048 142760 5.34 150808 87 8460 141182 5.65 149642 88 7551 137595 5.20 145146 89 8016 135667 5.58 143683 90 7965 137578 5.47 145543 91 7906 135474 5.51 143380 92 7167 133524 5.09 140691 93 7276 131969 5.23 139245 94 6988 130914 5.07 137902 95 7065 127932 5.23 134997 96 6979 126819 5.22 133798 97 6656 127314 4.97 133970 98 6055 121770 4.74 127825 99 4644 0 100.00 4644