Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-227_S35_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-227_S35_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 13531234
Paired-end alignments with a unique best hit 6848677
Pairs without alignments under any condition 5415876
Pairs that did not map uniquely 1266681
Genomic sequence context not extractable (edges of chromosomes) 9

Cytosine Methylation

Total C's analysed 209732703
Methylated C's in CpG context 7552418
Methylated C's in CHG context 1267634
Methylated C's in CHH context 8547890
Methylated C's in Unknown context 313577
Unmethylated C's in CpG context 21092550
Unmethylated C's in CHG context 43317740
Unmethylated C's in CHH context 127954471
Unmethylated C's in Unknown context 1377183
Percentage methylation (CpG context) 26.4%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 6.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3353489 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 3495179 original bottom strand