CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 67458 99437 40.42 166895 2 64913 108956 37.33 173869 3 62164 94933 39.57 157097 4 64335 74998 46.17 139333 5 62986 64318 49.48 127304 6 64219 54959 53.88 119178 7 72991 57127 56.10 130118 8 33706 62706 34.96 96412 9 29801 57269 34.23 87070 10 29796 55859 34.79 85655 11 31161 57978 34.96 89139 12 30476 58984 34.07 89460 13 29855 61682 32.62 91537 14 28641 62132 31.55 90773 15 28358 62966 31.05 91324 16 26333 62061 29.79 88394 17 25024 60521 29.25 85545 18 26178 62107 29.65 88285 19 24848 63117 28.25 87965 20 25122 63148 28.46 88270 21 25406 64173 28.36 89579 22 24898 63193 28.26 88091 23 24724 62512 28.34 87236 24 24447 62720 28.05 87167 25 23903 63357 27.39 87260 26 24381 62226 28.15 86607 27 24465 64071 27.63 88536 28 24986 63367 28.28 88353 29 24736 65870 27.30 90606 30 23754 64818 26.82 88572 31 24412 62978 27.93 87390 32 23586 61656 27.67 85242 33 24277 62080 28.11 86357 34 25090 61836 28.86 86926 35 24305 62242 28.08 86547 36 24022 63371 27.49 87393 37 23237 61563 27.40 84800 38 23108 61574 27.29 84682 39 23873 63150 27.43 87023 40 23760 61270 27.94 85030 41 23789 61097 28.02 84886 42 24130 62681 27.80 86811 43 23783 62820 27.46 86603 44 23600 62085 27.54 85685 45 23948 62294 27.77 86242 46 24343 62807 27.93 87150 47 23938 61116 28.14 85054 48 23621 61790 27.66 85411 49 24730 62076 28.49 86806 50 23636 63549 27.11 87185 51 23930 63094 27.50 87024 52 24336 65579 27.07 89915 53 23306 61932 27.34 85238 54 22890 61840 27.02 84730 55 22875 60034 27.59 82909 56 23075 59411 27.97 82486 57 23373 60916 27.73 84289 58 24044 61011 28.27 85055 59 24362 60478 28.72 84840 60 23496 61016 27.80 84512 61 23603 59967 28.24 83570 62 23294 61028 27.63 84322 63 22898 59992 27.62 82890 64 22530 59903 27.33 82433 65 23086 58938 28.15 82024 66 23110 59385 28.01 82495 67 22924 57880 28.37 80804 68 22571 57400 28.22 79971 69 22521 56724 28.42 79245 70 22407 56818 28.28 79225 71 21784 56215 27.93 77999 72 21619 55661 27.97 77280 73 21404 54918 28.04 76322 74 21389 54684 28.12 76073 75 20288 55060 26.93 75348 76 20595 54230 27.52 74825 77 21099 53646 28.23 74745 78 20877 53379 28.11 74256 79 20579 53032 27.96 73611 80 20076 52805 27.55 72881 81 19757 52194 27.46 71951 82 19657 51645 27.57 71302 83 19989 52274 27.66 72263 84 19674 52166 27.39 71840 85 19594 50743 27.86 70337 86 19059 50280 27.49 69339 87 18731 49462 27.47 68193 88 18906 49349 27.70 68255 89 18575 49103 27.45 67678 90 18343 48907 27.28 67250 91 18024 48243 27.20 66267 92 18119 47887 27.45 66006 93 17789 47876 27.09 65665 94 18010 46789 27.79 64799 95 17934 46909 27.66 64843 96 17568 47382 27.05 64950 97 17080 45593 27.25 62673 98 16050 43315 27.04 59365 99 12510 33649 27.10 46159 100 16626 42604 28.07 59230 101 16060 43783 26.84 59843 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 89578 125846 41.58 215424 2 53059 119692 30.71 172751 3 24482 117292 17.27 141774 4 14656 116075 11.21 130731 5 10090 105934 8.70 116024 6 10789 104314 9.37 115103 7 6537 127440 4.88 133977 8 3690 138499 2.60 142189 9 2904 133140 2.13 136044 10 2845 128492 2.17 131337 11 3387 129798 2.54 133185 12 3214 132042 2.38 135256 13 2857 127115 2.20 129972 14 2728 127109 2.10 129837 15 2975 131188 2.22 134163 16 2497 130572 1.88 133069 17 3196 129219 2.41 132415 18 2427 129635 1.84 132062 19 2270 130000 1.72 132270 20 2482 136198 1.79 138680 21 2260 138160 1.61 140420 22 2625 135650 1.90 138275 23 2627 137659 1.87 140286 24 2504 139816 1.76 142320 25 2580 134713 1.88 137293 26 4114 136228 2.93 140342 27 2269 137502 1.62 139771 28 2266 137829 1.62 140095 29 3257 139240 2.29 142497 30 2119 141315 1.48 143434 31 2142 137124 1.54 139266 32 2160 139179 1.53 141339 33 2369 139695 1.67 142064 34 2377 137528 1.70 139905 35 3396 137982 2.40 141378 36 2374 139675 1.67 142049 37 2258 134232 1.65 136490 38 3062 137473 2.18 140535 39 2255 136498 1.63 138753 40 2276 136669 1.64 138945 41 2117 137000 1.52 139117 42 2076 137128 1.49 139204 43 2118 135054 1.54 137172 44 2000 137926 1.43 139926 45 2269 137183 1.63 139452 46 2270 135763 1.64 138033 47 2505 136347 1.80 138852 48 2087 139360 1.48 141447 49 2281 135282 1.66 137563 50 2441 135761 1.77 138202 51 2238 137697 1.60 139935 52 2242 137590 1.60 139832 53 2338 135588 1.70 137926 54 2680 138615 1.90 141295 55 2395 135601 1.74 137996 56 2513 138004 1.79 140517 57 2542 136851 1.82 139393 58 2470 136114 1.78 138584 59 2639 137162 1.89 139801 60 2379 137780 1.70 140159 61 2552 135725 1.85 138277 62 2731 136869 1.96 139600 63 2797 134778 2.03 137575 64 2812 135185 2.04 137997 65 3905 133618 2.84 137523 66 2680 131851 1.99 134531 67 2852 127550 2.19 130402 68 3355 130205 2.51 133560 69 2437 129370 1.85 131807 70 2421 126486 1.88 128907 71 2485 126155 1.93 128640 72 2563 126018 1.99 128581 73 2617 125243 2.05 127860 74 3121 123414 2.47 126535 75 2386 124210 1.88 126596 76 2350 121536 1.90 123886 77 3112 120810 2.51 123922 78 2417 120260 1.97 122677 79 2488 117696 2.07 120184 80 2284 116399 1.92 118683 81 2279 115088 1.94 117367 82 2226 114011 1.92 116237 83 2367 115623 2.01 117990 84 2286 115469 1.94 117755 85 2447 112878 2.12 115325 86 2584 113985 2.22 116569 87 2247 114847 1.92 117094 88 2266 110834 2.00 113100 89 2544 109811 2.26 112355 90 2312 109871 2.06 112183 91 2377 107949 2.15 110326 92 2445 108660 2.20 111105 93 2751 107227 2.50 109978 94 2499 105332 2.32 107831 95 2706 104193 2.53 106899 96 2554 104228 2.39 106782 97 2599 95331 2.65 97930 98 2484 88681 2.72 91165 99 1287 56103 2.24 57390 100 1953 57199 3.30 59152 101 3602 95940 3.62 99542 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 121567 181070 40.17 302637 2 86221 191648 31.03 277869 3 57399 222286 20.52 279685 4 56992 230649 19.81 287641 5 57067 267095 17.60 324162 6 47859 289659 14.18 337518 7 35118 366508 8.74 401626 8 34443 397064 7.98 431507 9 25026 367881 6.37 392907 10 25135 360198 6.52 385333 11 34421 360603 8.71 395024 12 27408 364790 6.99 392198 13 31646 373474 7.81 405120 14 36065 382657 8.61 418722 15 29106 392891 6.90 421997 16 28790 399059 6.73 427849 17 36181 398598 8.32 434779 18 28000 414179 6.33 442179 19 27787 418829 6.22 446616 20 34650 436348 7.36 470998 21 28155 436094 6.06 464249 22 31532 435250 6.76 466782 23 34876 436722 7.40 471598 24 28681 435772 6.18 464453 25 31957 437513 6.81 469470 26 35349 442190 7.40 477539 27 29057 443772 6.15 472829 28 28420 447014 5.98 475434 29 35552 445361 7.39 480913 30 29170 441179 6.20 470349 31 30256 434821 6.51 465077 32 33545 439788 7.09 473333 33 29085 438497 6.22 467582 34 34342 442918 7.20 477260 35 35570 438055 7.51 473625 36 29707 443926 6.27 473633 37 28383 438330 6.08 466713 38 35366 442913 7.39 478279 39 28367 440534 6.05 468901 40 29068 439439 6.20 468507 41 35367 442889 7.39 478256 42 30205 447192 6.33 477397 43 33765 440668 7.12 474433 44 35056 446180 7.28 481236 45 31296 440457 6.63 471753 46 30247 441862 6.41 472109 47 34746 440483 7.31 475229 48 28110 441439 5.99 469549 49 28990 434977 6.25 463967 50 33506 436106 7.13 469612 51 28049 431419 6.10 459468 52 31469 429660 6.82 461129 53 34636 427220 7.50 461856 54 29334 428927 6.40 458261 55 30018 427628 6.56 457646 56 35097 428566 7.57 463663 57 28420 433545 6.15 461965 58 28999 429662 6.32 458661 59 34327 430856 7.38 465183 60 27794 426010 6.12 453804 61 30730 423152 6.77 453882 62 32934 418013 7.30 450947 63 28193 414567 6.37 442760 64 30910 413846 6.95 444756 65 32396 409492 7.33 441888 66 27241 407468 6.27 434709 67 27417 402846 6.37 430263 68 31643 401168 7.31 432811 69 27172 398361 6.39 425533 70 27716 397371 6.52 425087 71 31666 395065 7.42 426731 72 27371 394233 6.49 421604 73 31300 387960 7.47 419260 74 31709 387929 7.56 419638 75 27310 383937 6.64 411247 76 27033 382099 6.61 409132 77 32336 378229 7.88 410565 78 24874 375054 6.22 399928 79 26649 371760 6.69 398409 80 30830 369711 7.70 400541 81 26840 364930 6.85 391770 82 29094 361404 7.45 390498 83 31527 362160 8.01 393687 84 27240 357530 7.08 384770 85 26193 352520 6.92 378713 86 29514 349059 7.80 378573 87 24916 348771 6.67 373687 88 24557 345510 6.64 370067 89 29401 342289 7.91 371690 90 24823 339832 6.81 364655 91 26121 335143 7.23 361264 92 28346 335163 7.80 363509 93 24490 330737 6.89 355227 94 24589 327949 6.97 352538 95 28303 323054 8.06 351357 96 23100 316669 6.80 339769 97 22738 309253 6.85 331991 98 25363 289735 8.05 315098 99 13557 201225 6.31 214782 100 16461 178659 8.44 195120 101 24597 292551 7.76 317148 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 62016 61736 50.11 123752 2 52659 50550 51.02 103209 3 55315 57386 49.08 112701 4 49200 62522 44.04 111722 5 21695 79387 21.46 101082 6 13742 44723 23.50 58465 7 11703 47894 19.64 59597 8 12400 43352 22.24 55752 9 10746 37586 22.23 48332 10 11650 41751 21.82 53401 11 12690 40998 23.64 53688 12 12163 40464 23.11 52627 13 12590 38077 24.85 50667 14 13087 39703 24.79 52790 15 12543 36237 25.71 48780 16 11883 34549 25.59 46432 17 14764 38129 27.91 52893 18 14018 36535 27.73 50553 19 13395 35795 27.23 49190 20 12332 35316 25.88 47648 21 12810 33821 27.47 46631 22 12769 35369 26.53 48138 23 12265 33494 26.80 45759 24 11336 31218 26.64 42554 25 12813 33839 27.47 46652 26 11709 31856 26.88 43565 27 12577 32592 27.84 45169 28 11671 30500 27.68 42171 29 12019 31952 27.33 43971 30 11436 29883 27.68 41319 31 11096 30385 26.75 41481 32 10810 29143 27.06 39953 33 12275 29939 29.08 42214 34 11833 31194 27.50 43027 35 14445 33344 30.23 47789 36 11734 28586 29.10 40320 37 12072 29971 28.71 42043 38 10618 28426 27.19 39044 39 11280 28359 28.46 39639 40 12334 28659 30.09 40993 41 10651 28351 27.31 39002 42 10965 29073 27.39 40038 43 10786 27692 28.03 38478 44 10171 27227 27.20 37398 45 13167 31238 29.65 44405 46 9801 25414 27.83 35215 47 10001 26573 27.34 36574 48 9998 25906 27.85 35904 49 9728 27851 25.89 37579 50 9209 24649 27.20 33858 51 9317 23962 28.00 33279 52 9169 24477 27.25 33646 53 9446 24067 28.19 33513 54 9207 24265 27.51 33472 55 9522 23232 29.07 32754 56 8622 24157 26.30 32779 57 9164 23201 28.31 32365 58 8716 23088 27.41 31804 59 8524 21678 28.22 30202 60 8390 22564 27.10 30954 61 7684 21232 26.57 28916 62 7707 20136 27.68 27843 63 8296 20478 28.83 28774 64 7939 20258 28.16 28197 65 7687 19324 28.46 27011 66 8119 20498 28.37 28617 67 7532 20405 26.96 27937 68 8531 21570 28.34 30101 69 7620 18748 28.90 26368 70 7350 18691 28.22 26041 71 7542 18257 29.23 25799 72 6781 17873 27.50 24654 73 6920 18014 27.75 24934 74 6515 17870 26.72 24385 75 6426 17598 26.75 24024 76 6633 17017 28.05 23650 77 6470 16755 27.86 23225 78 6289 16611 27.46 22900 79 6178 16332 27.45 22510 80 6095 16225 27.31 22320 81 6271 15882 28.31 22153 82 6154 16065 27.70 22219 83 6271 15573 28.71 21844 84 7019 16733 29.55 23752 85 5780 15218 27.53 20998 86 5706 15117 27.40 20823 87 5675 14574 28.03 20249 88 5623 14483 27.97 20106 89 6097 14985 28.92 21082 90 5936 14905 28.48 20841 91 5647 14537 27.98 20184 92 5338 14425 27.01 19763 93 5419 14053 27.83 19472 94 5577 14157 28.26 19734 95 5521 13917 28.40 19438 96 5424 13844 28.15 19268 97 5991 14599 29.10 20590 98 5191 13306 28.06 18497 99 4655 0 100.00 4655 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18389 79732 18.74 98121 2 17282 77112 18.31 94394 3 16731 78945 17.49 95676 4 17944 88052 16.93 105996 5 2953 156126 1.86 159079 6 2112 192286 1.09 194398 7 1438 107007 1.33 108445 8 1412 117587 1.19 118999 9 1382 95424 1.43 96806 10 1368 91375 1.48 92743 11 1903 129484 1.45 131387 12 1379 96596 1.41 97975 13 1440 97872 1.45 99312 14 1485 92974 1.57 94459 15 1460 90212 1.59 91672 16 1268 83070 1.50 84338 17 1399 91204 1.51 92603 18 2069 79326 2.54 81395 19 1385 77553 1.75 78938 20 1322 77284 1.68 78606 21 2176 73929 2.86 76105 22 1389 82505 1.66 83894 23 1386 81744 1.67 83130 24 1198 72048 1.64 73246 25 1213 72845 1.64 74058 26 1403 79216 1.74 80619 27 1337 71862 1.83 73199 28 1228 69259 1.74 70487 29 1229 73955 1.63 75184 30 1342 70931 1.86 72273 31 1106 69032 1.58 70138 32 1120 69649 1.58 70769 33 1283 85354 1.48 86637 34 1135 67968 1.64 69103 35 1199 71461 1.65 72660 36 1205 71086 1.67 72291 37 1153 64763 1.75 65916 38 1178 70740 1.64 71918 39 1281 64824 1.94 66105 40 1192 64557 1.81 65749 41 1226 61660 1.95 62886 42 1257 57725 2.13 58982 43 1230 59805 2.02 61035 44 1093 59360 1.81 60453 45 1081 54630 1.94 55711 46 1089 54909 1.94 55998 47 1214 57228 2.08 58442 48 1133 54358 2.04 55491 49 1126 56158 1.97 57284 50 1247 55593 2.19 56840 51 1170 51204 2.23 52374 52 1170 50214 2.28 51384 53 1365 56406 2.36 57771 54 1159 52550 2.16 53709 55 1084 52092 2.04 53176 56 1047 51390 2.00 52437 57 1543 49158 3.04 50701 58 1032 48849 2.07 49881 59 974 49451 1.93 50425 60 1217 48331 2.46 49548 61 892 47595 1.84 48487 62 911 49719 1.80 50630 63 808 49281 1.61 50089 64 737 43982 1.65 44719 65 795 47429 1.65 48224 66 692 43534 1.56 44226 67 822 48095 1.68 48917 68 725 46219 1.54 46944 69 773 44719 1.70 45492 70 729 44455 1.61 45184 71 755 45936 1.62 46691 72 687 41925 1.61 42612 73 657 41378 1.56 42035 74 620 43530 1.40 44150 75 622 41202 1.49 41824 76 627 39453 1.56 40080 77 694 42135 1.62 42829 78 624 39991 1.54 40615 79 647 39256 1.62 39903 80 612 38213 1.58 38825 81 648 37762 1.69 38410 82 623 37437 1.64 38060 83 626 37793 1.63 38419 84 590 35726 1.62 36316 85 605 40730 1.46 41335 86 613 35856 1.68 36469 87 620 35882 1.70 36502 88 568 33716 1.66 34284 89 655 36738 1.75 37393 90 721 35213 2.01 35934 91 696 36588 1.87 37284 92 617 35144 1.73 35761 93 572 33270 1.69 33842 94 546 32997 1.63 33543 95 613 33815 1.78 34428 96 738 32696 2.21 33434 97 572 31841 1.76 32413 98 525 31592 1.63 32117 99 548 0 100.00 548 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39677 105760 27.28 145437 2 36269 86237 29.61 122506 3 38956 87916 30.70 126872 4 40299 86073 31.89 126372 5 18022 180093 9.10 198115 6 17301 238836 6.75 256137 7 17921 320412 5.30 338333 8 16499 313488 5.00 329987 9 19415 295411 6.17 314826 10 17528 303261 5.46 320789 11 17112 300782 5.38 317894 12 16055 279102 5.44 295157 13 16189 290351 5.28 306540 14 15785 290287 5.16 306072 15 15186 300711 4.81 315897 16 13845 288529 4.58 302374 17 14809 288871 4.88 303680 18 14152 287226 4.70 301378 19 13685 264923 4.91 278608 20 14957 282896 5.02 297853 21 14382 266146 5.13 280528 22 15178 256921 5.58 272099 23 14698 251542 5.52 266240 24 13825 241613 5.41 255438 25 15020 239826 5.89 254846 26 14042 239447 5.54 253489 27 14712 260820 5.34 275532 28 13597 243526 5.29 257123 29 13917 239969 5.48 253886 30 15081 231535 6.12 246616 31 14017 226546 5.83 240563 32 13998 220952 5.96 234950 33 14745 218114 6.33 232859 34 14401 218345 6.19 232746 35 14478 224891 6.05 239369 36 13192 224717 5.54 237909 37 12841 220291 5.51 233132 38 13729 234549 5.53 248278 39 13655 210694 6.09 224349 40 13068 222868 5.54 235936 41 13488 207620 6.10 221108 42 13394 212825 5.92 226219 43 13625 199956 6.38 213581 44 12464 198644 5.90 211108 45 12904 198455 6.11 211359 46 11999 201577 5.62 213576 47 11948 196906 5.72 208854 48 12421 190746 6.11 203167 49 11628 195753 5.61 207381 50 11979 190296 5.92 202275 51 11927 184259 6.08 196186 52 11280 174762 6.06 186042 53 10755 176429 5.75 187184 54 10556 171065 5.81 181621 55 10470 179537 5.51 190007 56 10419 172567 5.69 182986 57 10183 177301 5.43 187484 58 9820 170915 5.43 180735 59 10338 163036 5.96 173374 60 9936 168760 5.56 178696 61 10313 159602 6.07 169915 62 9739 159663 5.75 169402 63 9356 161557 5.47 170913 64 9631 155371 5.84 165002 65 9044 157982 5.41 167026 66 9250 150740 5.78 159990 67 8779 152196 5.45 160975 68 8876 158054 5.32 166930 69 9216 152656 5.69 161872 70 8634 148053 5.51 156687 71 8681 145217 5.64 153898 72 9092 144288 5.93 153380 73 8905 141945 5.90 150850 74 8435 142739 5.58 151174 75 8212 141787 5.47 149999 76 7899 136397 5.47 144296 77 8461 135441 5.88 143902 78 8544 137659 5.84 146203 79 8125 140079 5.48 148204 80 8477 133173 5.98 141650 81 8653 133504 6.09 142157 82 8382 132724 5.94 141106 83 8031 130949 5.78 138980 84 8017 131371 5.75 139388 85 7559 127886 5.58 135445 86 7529 127852 5.56 135381 87 7747 125947 5.79 133694 88 7490 122160 5.78 129650 89 7487 121505 5.80 128992 90 7594 122492 5.84 130086 91 7390 120749 5.77 128139 92 6978 119527 5.52 126505 93 6894 118337 5.51 125231 94 6719 116135 5.47 122854 95 6680 113911 5.54 120591 96 6552 112732 5.49 119284 97 6391 113098 5.35 119489 98 5866 107851 5.16 113717 99 4259 0 100.00 4259