Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-226_S34_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-226_S34_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 11133150
Paired-end alignments with a unique best hit 5810287
Pairs without alignments under any condition 4332142
Pairs that did not map uniquely 990721
Genomic sequence context not extractable (edges of chromosomes) 14

Cytosine Methylation

Total C's analysed 181942001
Methylated C's in CpG context 6609078
Methylated C's in CHG context 1105118
Methylated C's in CHH context 7285387
Methylated C's in Unknown context 262752
Unmethylated C's in CpG context 18761881
Unmethylated C's in CHG context 37898881
Unmethylated C's in CHH context 110281656
Unmethylated C's in Unknown context 1234674
Percentage methylation (CpG context) 26.0%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 6.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2836017 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 2974256 original bottom strand