CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83216 127150 39.56 210366 2 79219 141330 35.92 220549 3 76975 125749 37.97 202724 4 79750 103091 43.62 182841 5 77577 89448 46.45 167025 6 78649 75723 50.95 154372 7 87710 77856 52.98 165566 8 42233 85912 32.96 128145 9 37538 79391 32.10 116929 10 37485 77337 32.65 114822 11 39572 79932 33.11 119504 12 38706 80609 32.44 119315 13 37951 83435 31.26 121386 14 36918 84671 30.36 121589 15 36355 85064 29.94 121419 16 33614 84866 28.37 118480 17 32487 82803 28.18 115290 18 33592 85312 28.25 118904 19 32645 85241 27.69 117886 20 33041 86194 27.71 119235 21 32855 87529 27.29 120384 22 32491 86320 27.35 118811 23 32168 85464 27.35 117632 24 31759 85863 27.00 117622 25 31457 85410 26.92 116867 26 31715 84683 27.25 116398 27 31094 86840 26.37 117934 28 32283 86160 27.26 118443 29 31439 86944 26.56 118383 30 30647 87048 26.04 117695 31 31649 84514 27.25 116163 32 30594 83536 26.81 114130 33 30964 83643 27.02 114607 34 31802 83476 27.59 115278 35 31191 83939 27.09 115130 36 30617 85229 26.43 115846 37 29964 83351 26.44 113315 38 29464 82330 26.36 111794 39 30411 84052 26.57 114463 40 30393 82391 26.95 112784 41 30353 82070 27.00 112423 42 31074 84282 26.94 115356 43 30380 83123 26.77 113503 44 29924 82448 26.63 112372 45 30371 82540 26.90 112911 46 30452 83116 26.81 113568 47 29827 81589 26.77 111416 48 29929 82130 26.71 112059 49 30679 82207 27.18 112886 50 29438 83699 26.02 113137 51 29665 82850 26.37 112515 52 30301 84949 26.29 115250 53 29288 81566 26.42 110854 54 29000 80956 26.37 109956 55 28907 78974 26.80 107881 56 29299 79237 26.99 108536 57 29801 80316 27.06 110117 58 29983 80320 27.18 110303 59 30484 79846 27.63 110330 60 30324 80610 27.34 110934 61 30175 78801 27.69 108976 62 29592 79422 27.15 109014 63 28865 77938 27.03 106803 64 28799 77779 27.02 106578 65 28844 76269 27.44 105113 66 29043 76895 27.42 105938 67 28306 74560 27.52 102866 68 28039 74509 27.34 102548 69 27677 73797 27.27 101474 70 27142 72826 27.15 99968 71 26805 72002 27.13 98807 72 26615 70909 27.29 97524 73 26002 70355 26.99 96357 74 25786 69546 27.05 95332 75 25270 70037 26.51 95307 76 25115 68091 26.95 93206 77 25147 68408 26.88 93555 78 25257 68033 27.07 93290 79 24887 67094 27.06 91981 80 24322 66441 26.80 90763 81 23785 66150 26.45 89935 82 23312 64882 26.43 88194 83 23610 65580 26.47 89190 84 23424 65063 26.47 88487 85 23325 63973 26.72 87298 86 22843 62519 26.76 85362 87 22132 62007 26.30 84139 88 21904 62159 26.06 84063 89 21671 60790 26.28 82461 90 21558 60621 26.23 82179 91 21158 59724 26.16 80882 92 20962 59306 26.12 80268 93 21219 59421 26.31 80640 94 20655 58138 26.21 78793 95 20393 57872 26.06 78265 96 20648 58568 26.07 79216 97 19598 56636 25.71 76234 98 18665 53290 25.94 71955 99 14495 41957 25.68 56452 100 18789 52366 26.41 71155 101 18165 53955 25.19 72120 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 116352 172412 40.29 288764 2 68949 165793 29.37 234742 3 30746 159725 16.14 190471 4 18161 159991 10.19 178152 5 12289 145132 7.81 157421 6 12737 141361 8.27 154098 7 8053 174132 4.42 182185 8 4482 188308 2.32 192790 9 3502 181419 1.89 184921 10 3527 175241 1.97 178768 11 3992 176161 2.22 180153 12 3672 176532 2.04 180204 13 3581 170838 2.05 174419 14 3380 170433 1.94 173813 15 3610 176643 2.00 180253 16 3144 177201 1.74 180345 17 3839 173347 2.17 177186 18 3161 173481 1.79 176642 19 2795 172720 1.59 175515 20 3068 183497 1.64 186565 21 3044 185585 1.61 188629 22 3391 181948 1.83 185339 23 3309 183695 1.77 187004 24 3149 186575 1.66 189724 25 3100 180994 1.68 184094 26 4471 180448 2.42 184919 27 3071 183923 1.64 186994 28 2886 184470 1.54 187356 29 3847 185734 2.03 189581 30 2730 187826 1.43 190556 31 2833 181638 1.54 184471 32 2874 184206 1.54 187080 33 3117 184514 1.66 187631 34 3177 182365 1.71 185542 35 3866 181370 2.09 185236 36 3089 183464 1.66 186553 37 2952 177220 1.64 180172 38 3694 180153 2.01 183847 39 2927 180933 1.59 183860 40 2835 179611 1.55 182446 41 2800 179795 1.53 182595 42 2877 180299 1.57 183176 43 2682 176841 1.49 179523 44 2713 178898 1.49 181611 45 2838 180126 1.55 182964 46 2905 176549 1.62 179454 47 3268 177635 1.81 180903 48 2709 182086 1.47 184795 49 2906 176413 1.62 179319 50 3173 176656 1.76 179829 51 2823 179128 1.55 181951 52 2856 178358 1.58 181214 53 2932 175334 1.64 178266 54 3318 179072 1.82 182390 55 3115 176045 1.74 179160 56 3200 178381 1.76 181581 57 3281 177791 1.81 181072 58 3140 175568 1.76 178708 59 3502 176912 1.94 180414 60 3242 177066 1.80 180308 61 3383 173326 1.91 176709 62 3555 173407 2.01 176962 63 3597 171997 2.05 175594 64 3645 170467 2.09 174112 65 4592 169185 2.64 173777 66 3476 165168 2.06 168644 67 3460 160855 2.11 164315 68 3895 163658 2.32 167553 69 3068 162364 1.85 165432 70 2938 158755 1.82 161693 71 3118 157724 1.94 160842 72 2996 157750 1.86 160746 73 3230 155906 2.03 159136 74 3576 154500 2.26 158076 75 2958 153696 1.89 156654 76 2859 149049 1.88 151908 77 3608 149563 2.36 153171 78 2871 148134 1.90 151005 79 2953 143667 2.01 146620 80 2938 143043 2.01 145981 81 2799 141832 1.94 144631 82 2842 139323 2.00 142165 83 2955 140691 2.06 143646 84 2887 141287 2.00 144174 85 2854 137987 2.03 140841 86 3093 138591 2.18 141684 87 2777 138437 1.97 141214 88 2792 135778 2.01 138570 89 2908 133198 2.14 136106 90 2637 133626 1.94 136263 91 2735 130585 2.05 133320 92 2892 131532 2.15 134424 93 3118 130012 2.34 133130 94 2924 126621 2.26 129545 95 2924 126652 2.26 129576 96 3012 125410 2.35 128422 97 3119 114514 2.65 117633 98 2902 106459 2.65 109361 99 1536 68797 2.18 70333 100 2237 69967 3.10 72204 101 4023 115407 3.37 119430 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 164640 244395 40.25 409035 2 109044 262521 29.35 371565 3 70990 295961 19.35 366951 4 67546 310941 17.85 378487 5 66583 364811 15.43 431394 6 56621 394559 12.55 451180 7 41126 498611 7.62 539737 8 38853 541037 6.70 579890 9 29753 500337 5.61 530090 10 29800 488416 5.75 518216 11 39219 490759 7.40 529978 12 32686 494156 6.20 526842 13 36478 506588 6.72 543066 14 41124 516962 7.37 558086 15 34133 529801 6.05 563934 16 34494 535264 6.05 569758 17 40447 537723 7.00 578170 18 33038 556563 5.60 589601 19 33313 566033 5.56 599346 20 39796 586049 6.36 625845 21 33500 584842 5.42 618342 22 36732 583643 5.92 620375 23 40447 583975 6.48 624422 24 34290 583442 5.55 617732 25 37197 585367 5.97 622564 26 41002 591765 6.48 632767 27 34069 594648 5.42 628717 28 34131 595300 5.42 629431 29 40761 594984 6.41 635745 30 34150 590311 5.47 624461 31 35374 580437 5.74 615811 32 38295 583167 6.16 621462 33 34303 582193 5.56 616496 34 39069 587947 6.23 627016 35 40380 580121 6.51 620501 36 33973 587970 5.46 621943 37 33173 581533 5.40 614706 38 40029 585197 6.40 625226 39 32830 578874 5.37 611704 40 33791 577456 5.53 611247 41 39562 580424 6.38 619986 42 34855 584757 5.63 619612 43 37687 580113 6.10 617800 44 38970 584823 6.25 623793 45 35206 578892 5.73 614098 46 34347 579217 5.60 613564 47 38136 577217 6.20 615353 48 31795 576337 5.23 608132 49 32521 570364 5.39 602885 50 37214 568360 6.15 605574 51 31864 561816 5.37 593680 52 34468 559747 5.80 594215 53 37416 556267 6.30 593683 54 32824 556656 5.57 589480 55 33727 552911 5.75 586638 56 37688 552043 6.39 589731 57 31378 556288 5.34 587666 58 32427 551424 5.55 583851 59 37442 551136 6.36 588578 60 30826 542668 5.38 573494 61 33864 537327 5.93 571191 62 36315 531858 6.39 568173 63 31216 526801 5.59 558017 64 33777 521844 6.08 555621 65 34874 516163 6.33 551037 66 30231 512036 5.57 542267 67 30364 506275 5.66 536639 68 34054 503862 6.33 537916 69 29548 500124 5.58 529672 70 29933 494921 5.70 524854 71 33832 492647 6.43 526479 72 29666 491130 5.70 520796 73 33065 482316 6.42 515381 74 33721 479883 6.57 513604 75 29256 475992 5.79 505248 76 29370 472143 5.86 501513 77 33535 467852 6.69 501387 78 27064 462008 5.53 489072 79 28245 458381 5.80 486626 80 32343 453917 6.65 486260 81 28614 448936 5.99 477550 82 30396 443030 6.42 473426 83 32946 443495 6.92 476441 84 28659 438306 6.14 466965 85 27634 430408 6.03 458042 86 31055 426603 6.79 457658 87 26201 424266 5.82 450467 88 26227 420116 5.88 446343 89 30512 415813 6.84 446325 90 26305 413310 5.98 439615 91 27215 407449 6.26 434664 92 29125 405948 6.69 435073 93 25787 402009 6.03 427796 94 26072 397750 6.15 423822 95 29342 392400 6.96 421742 96 24260 387133 5.90 411393 97 23964 376043 5.99 400007 98 26560 352162 7.01 378722 99 14685 244168 5.67 258853 100 16617 217888 7.09 234505 101 25786 355701 6.76 381487 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72204 79786 47.51 151990 2 62225 67134 48.10 129359 3 66068 75851 46.55 141919 4 60354 82913 42.13 143267 5 26517 106705 19.90 133222 6 16437 59432 21.66 75869 7 14169 62725 18.43 76894 8 14536 57749 20.11 72285 9 12578 49410 20.29 61988 10 14317 55597 20.48 69914 11 15275 54441 21.91 69716 12 14692 53054 21.69 67746 13 15341 50775 23.20 66116 14 15887 52855 23.11 68742 15 15365 48709 23.98 64074 16 14481 45446 24.16 59927 17 17901 50819 26.05 68720 18 17226 49411 25.85 66637 19 16242 48250 25.18 64492 20 15028 47245 24.13 62273 21 15843 45864 25.67 61707 22 15793 47272 25.04 63065 23 14891 45001 24.86 59892 24 13802 41484 24.96 55286 25 15727 45110 25.85 60837 26 14486 42059 25.62 56545 27 15582 43702 26.28 59284 28 14076 40956 25.58 55032 29 14817 43143 25.56 57960 30 14180 39862 26.24 54042 31 13874 40514 25.51 54388 32 13146 38400 25.50 51546 33 15180 39420 27.80 54600 34 14243 40689 25.93 54932 35 17249 44306 28.02 61555 36 14087 37953 27.07 52040 37 14753 39576 27.15 54329 38 13024 37738 25.66 50762 39 13480 37286 26.55 50766 40 14842 37004 28.63 51846 41 13253 37047 26.35 50300 42 13317 37829 26.04 51146 43 12828 35570 26.51 48398 44 11991 35139 25.44 47130 45 15205 39746 27.67 54951 46 11945 32845 26.67 44790 47 12067 34271 26.04 46338 48 12251 33240 26.93 45491 49 11631 35206 24.83 46837 50 11091 31313 26.16 42404 51 11023 30667 26.44 41690 52 11132 31767 25.95 42899 53 11118 30793 26.53 41911 54 11170 30924 26.54 42094 55 11092 29753 27.16 40845 56 10191 29849 25.45 40040 57 10647 29666 26.41 40313 58 10302 29137 26.12 39439 59 9857 27364 26.48 37221 60 9753 28631 25.41 38384 61 9032 26566 25.37 35598 62 9115 25446 26.37 34561 63 9865 25912 27.57 35777 64 9312 25759 26.55 35071 65 8944 24574 26.68 33518 66 9542 25567 27.18 35109 67 8705 25774 25.25 34479 68 9766 27289 26.36 37055 69 8684 23934 26.62 32618 70 8409 23616 26.26 32025 71 8647 22762 27.53 31409 72 8432 22395 27.35 30827 73 8317 22915 26.63 31232 74 7588 22839 24.94 30427 75 7650 22002 25.80 29652 76 7733 21312 26.62 29045 77 7707 21083 26.77 28790 78 7748 21175 26.79 28923 79 7318 20869 25.96 28187 80 7179 20512 25.93 27691 81 7253 19952 26.66 27205 82 7070 20293 25.84 27363 83 7341 19576 27.27 26917 84 8003 20997 27.60 29000 85 6914 19344 26.33 26258 86 6764 19069 26.18 25833 87 6827 18431 27.03 25258 88 6933 18591 27.16 25524 89 7176 19182 27.23 26358 90 7061 18976 27.12 26037 91 6644 18496 26.43 25140 92 6453 18265 26.11 24718 93 6532 17880 26.76 24412 94 6513 17620 26.99 24133 95 6561 17637 27.11 24198 96 6396 17614 26.64 24010 97 6951 19053 26.73 26004 98 6326 17273 26.81 23599 99 5613 0 100.00 5613 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23496 102473 18.65 125969 2 22605 101358 18.24 123963 3 21673 104234 17.21 125907 4 23250 114003 16.94 137253 5 3635 204455 1.75 208090 6 2727 251103 1.07 253830 7 1777 139237 1.26 141014 8 1621 151823 1.06 153444 9 1587 123783 1.27 125370 10 1563 117663 1.31 119226 11 2250 164319 1.35 166569 12 1737 126521 1.35 128258 13 1623 126408 1.27 128031 14 1664 121291 1.35 122955 15 1699 115816 1.45 117515 16 1526 107720 1.40 109246 17 1821 118364 1.52 120185 18 2482 102995 2.35 105477 19 1762 101755 1.70 103517 20 1755 101159 1.71 102914 21 2639 96063 2.67 98702 22 1995 107022 1.83 109017 23 1769 105304 1.65 107073 24 1566 93203 1.65 94769 25 1663 94533 1.73 96196 26 1881 101221 1.82 103102 27 1779 92630 1.88 94409 28 1625 88995 1.79 90620 29 1794 95004 1.85 96798 30 1862 91711 1.99 93573 31 1599 88966 1.77 90565 32 1587 89578 1.74 91165 33 1861 108855 1.68 110716 34 1675 87678 1.87 89353 35 1676 90879 1.81 92555 36 1634 91097 1.76 92731 37 1526 82067 1.83 83593 38 1861 89741 2.03 91602 39 1771 83128 2.09 84899 40 1638 81276 1.98 82914 41 1564 77522 1.98 79086 42 1681 73021 2.25 74702 43 1937 75556 2.50 77493 44 1562 75254 2.03 76816 45 1542 68867 2.19 70409 46 1497 69452 2.11 70949 47 1675 72751 2.25 74426 48 1521 68113 2.18 69634 49 1549 71160 2.13 72709 50 1654 68733 2.35 70387 51 1440 63557 2.22 64997 52 1506 62244 2.36 63750 53 1826 69884 2.55 71710 54 1536 64262 2.33 65798 55 1355 64177 2.07 65532 56 1323 63266 2.05 64589 57 1799 60449 2.89 62248 58 1268 59949 2.07 61217 59 1081 60358 1.76 61439 60 1308 59166 2.16 60474 61 994 58594 1.67 59588 62 986 60735 1.60 61721 63 955 60274 1.56 61229 64 814 54597 1.47 55411 65 881 57620 1.51 58501 66 831 52972 1.54 53803 67 869 58190 1.47 59059 68 804 56675 1.40 57479 69 870 54469 1.57 55339 70 813 54227 1.48 55040 71 841 55788 1.49 56629 72 765 51956 1.45 52721 73 737 50617 1.44 51354 74 745 52848 1.39 53593 75 700 50368 1.37 51068 76 687 48568 1.39 49255 77 783 51835 1.49 52618 78 745 48651 1.51 49396 79 659 48345 1.34 49004 80 670 47181 1.40 47851 81 728 45873 1.56 46601 82 692 45152 1.51 45844 83 689 46141 1.47 46830 84 682 44365 1.51 45047 85 639 49253 1.28 49892 86 670 43802 1.51 44472 87 702 43987 1.57 44689 88 614 41508 1.46 42122 89 750 45256 1.63 46006 90 770 43843 1.73 44613 91 664 45030 1.45 45694 92 686 43386 1.56 44072 93 680 41307 1.62 41987 94 632 40753 1.53 41385 95 778 41958 1.82 42736 96 847 40611 2.04 41458 97 636 39306 1.59 39942 98 613 39323 1.53 39936 99 667 0 100.00 667 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51499 143029 26.47 194528 2 46075 117055 28.24 163130 3 49112 118451 29.31 167563 4 49851 115497 30.15 165348 5 20531 235186 8.03 255717 6 20403 314680 6.09 335083 7 20236 418408 4.61 438644 8 19186 410850 4.46 430036 9 22430 384522 5.51 406952 10 20403 398394 4.87 418797 11 20037 392121 4.86 412158 12 19098 364491 4.98 383589 13 18865 380299 4.73 399164 14 18728 381940 4.67 400668 15 18255 393779 4.43 412034 16 16672 375420 4.25 392092 17 17675 377930 4.47 395605 18 17041 376561 4.33 393602 19 16108 346239 4.45 362347 20 18247 367501 4.73 385748 21 17719 346806 4.86 364525 22 18244 335759 5.15 354003 23 17487 328085 5.06 345572 24 16600 312107 5.05 328707 25 17735 310872 5.40 328607 26 16757 308138 5.16 324895 27 17740 334025 5.04 351765 28 16314 315510 4.92 331824 29 16628 310800 5.08 327428 30 18080 298594 5.71 316674 31 16586 290652 5.40 307238 32 16129 281155 5.43 297284 33 17565 278036 5.94 295601 34 16865 279011 5.70 295876 35 17073 287512 5.61 304585 36 15641 284079 5.22 299720 37 14903 279279 5.07 294182 38 16139 294168 5.20 310307 39 16291 265816 5.77 282107 40 15362 278661 5.22 294023 41 15510 261698 5.60 277208 42 15437 266587 5.47 282024 43 15329 250209 5.77 265538 44 14163 249351 5.37 263514 45 14868 247401 5.67 262269 46 13460 249377 5.12 262837 47 13584 244711 5.26 258295 48 13955 237570 5.55 251525 49 12825 241011 5.05 253836 50 13236 235321 5.33 248557 51 13462 229301 5.55 242763 52 12377 215789 5.42 228166 53 11762 216407 5.15 228169 54 11664 210373 5.25 222037 55 11476 219662 4.96 231138 56 11338 212059 5.08 223397 57 11230 216912 4.92 228142 58 10469 210193 4.74 220662 59 10832 200190 5.13 211022 60 10675 206033 4.93 216708 61 10889 195655 5.27 206544 62 9948 196335 4.82 206283 63 10050 197184 4.85 207234 64 10091 190592 5.03 200683 65 9531 195009 4.66 204540 66 9740 186236 4.97 195976 67 9200 187097 4.69 196297 68 9100 193897 4.48 202997 69 9842 188154 4.97 197996 70 8962 182261 4.69 191223 71 8933 178781 4.76 187714 72 9417 178207 5.02 187624 73 9055 174372 4.94 183427 74 8705 175205 4.73 183910 75 8764 174908 4.77 183672 76 8261 168057 4.69 176318 77 8930 167157 5.07 176087 78 9111 169763 5.09 178874 79 8592 171069 4.78 179661 80 8548 165059 4.92 173607 81 9061 166342 5.17 175403 82 8583 163775 4.98 172358 83 8049 162007 4.73 170056 84 8440 161750 4.96 170190 85 7777 159143 4.66 166920 86 7706 157216 4.67 164922 87 8084 155182 4.95 163266 88 7574 151456 4.76 159030 89 7493 150419 4.75 157912 90 7852 150519 4.96 158371 91 7640 148403 4.90 156043 92 7041 147834 4.55 154875 93 7096 146084 4.63 153180 94 6742 144162 4.47 150904 95 6847 141442 4.62 148289 96 6806 139320 4.66 146126 97 6508 139959 4.44 146467 98 5848 134527 4.17 140375 99 4493 0 100.00 4493