Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-221_S33_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-221_S33_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 16300374
Paired-end alignments with a unique best hit 7892273
Pairs without alignments under any condition 6884123
Pairs that did not map uniquely 1523978
Genomic sequence context not extractable (edges of chromosomes) 18

Cytosine Methylation

Total C's analysed 237162640
Methylated C's in CpG context 8470434
Methylated C's in CHG context 1445513
Methylated C's in CHH context 8458428
Methylated C's in Unknown context 319697
Unmethylated C's in CpG context 24499627
Unmethylated C's in CHG context 49584430
Unmethylated C's in CHH context 144704208
Unmethylated C's in Unknown context 1602248
Percentage methylation (CpG context) 25.7%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 5.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3864190 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4028065 original bottom strand