CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 76756 121564 38.70 198320 2 72312 134485 34.97 206797 3 70767 118598 37.37 189365 4 73509 95658 43.45 169167 5 71754 83604 46.19 155358 6 72264 70395 50.66 142659 7 81177 73768 52.39 154945 8 39035 79732 32.87 118767 9 34593 73306 32.06 107899 10 34812 71510 32.74 106322 11 36615 74105 33.07 110720 12 35394 75216 32.00 110610 13 35157 78056 31.05 113213 14 34179 78663 30.29 112842 15 33206 79688 29.41 112894 16 31129 78513 28.39 109642 17 30104 76513 28.24 106617 18 31073 78966 28.24 110039 19 29889 79441 27.34 109330 20 30180 79872 27.42 110052 21 30487 81337 27.26 111824 22 29869 80153 27.15 110022 23 29297 79196 27.00 108493 24 28876 79408 26.67 108284 25 28843 79915 26.52 108758 26 28977 79085 26.82 108062 27 29007 80936 26.38 109943 28 29818 80716 26.98 110534 29 28841 82029 26.01 110870 30 28503 81049 26.02 109552 31 29009 79526 26.73 108535 32 28115 78112 26.47 106227 33 28680 78417 26.78 107097 34 29429 78749 27.20 108178 35 28630 79019 26.60 107649 36 28323 80738 25.97 109061 37 27871 77744 26.39 105615 38 27540 77280 26.27 104820 39 28299 79196 26.33 107495 40 28280 78043 26.60 106323 41 28018 77700 26.50 105718 42 28581 79197 26.52 107778 43 27963 79053 26.13 107016 44 28314 78909 26.41 107223 45 28376 78273 26.61 106649 46 28384 79168 26.39 107552 47 27887 77260 26.52 105147 48 28351 78382 26.56 106733 49 28563 78149 26.77 106712 50 27866 79806 25.88 107672 51 27963 79225 26.09 107188 52 28358 81700 25.77 110058 53 27426 77507 26.14 104933 54 27183 77262 26.03 104445 55 27090 75590 26.38 102680 56 27229 75020 26.63 102249 57 27871 76467 26.71 104338 58 28127 76948 26.77 105075 59 28569 76461 27.20 105030 60 28210 76590 26.92 104800 61 28049 75586 27.07 103635 62 27620 76030 26.65 103650 63 27119 74131 26.78 101250 64 27024 74394 26.65 101418 65 27168 72910 27.15 100078 66 27361 73646 27.09 101007 67 26759 71390 27.26 98149 68 26413 71547 26.96 97960 69 26472 70451 27.31 96923 70 25724 70059 26.86 95783 71 25316 69112 26.81 94428 72 24990 69315 26.50 94305 73 24538 67180 26.75 91718 74 24475 67345 26.66 91820 75 23997 67077 26.35 91074 76 23703 66438 26.30 90141 77 24145 65051 27.07 89196 78 23874 65752 26.64 89626 79 23661 64747 26.76 88408 80 23063 64150 26.44 87213 81 22602 63431 26.27 86033 82 22523 62798 26.40 85321 83 22718 63338 26.40 86056 84 22329 62727 26.25 85056 85 22086 61433 26.44 83519 86 21290 59999 26.19 81289 87 21046 60206 25.90 81252 88 21124 59718 26.13 80842 89 20686 58937 25.98 79623 90 20532 58658 25.93 79190 91 20238 57415 26.06 77653 92 20100 57361 25.95 77461 93 19815 57381 25.67 77196 94 19843 56151 26.11 75994 95 19678 56039 25.99 75717 96 19687 56885 25.71 76572 97 18770 54301 25.69 73071 98 17672 51475 25.56 69147 99 13993 40270 25.79 54263 100 18025 50871 26.16 68896 101 17868 51874 25.62 69742 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 105140 161550 39.42 266690 2 62066 153842 28.75 215908 3 29083 148612 16.37 177695 4 17153 147943 10.39 165096 5 11794 135307 8.02 147101 6 12988 132455 8.93 145443 7 7498 161400 4.44 168898 8 4428 172825 2.50 177253 9 3413 167085 2.00 170498 10 3440 161232 2.09 164672 11 4016 162648 2.41 166664 12 3710 164503 2.21 168213 13 3448 158842 2.12 162290 14 3346 158093 2.07 161439 15 3659 163399 2.19 167058 16 3015 162281 1.82 165296 17 4106 160051 2.50 164157 18 2996 160633 1.83 163629 19 2778 160310 1.70 163088 20 3063 169406 1.78 172469 21 2848 170415 1.64 173263 22 3232 167222 1.90 170454 23 3170 169017 1.84 172187 24 2977 173325 1.69 176302 25 3087 167575 1.81 170662 26 4798 168355 2.77 173153 27 2876 171523 1.65 174399 28 2900 170737 1.67 173637 29 3890 172666 2.20 176556 30 2611 174874 1.47 177485 31 2651 169662 1.54 172313 32 2651 172064 1.52 174715 33 2948 173496 1.67 176444 34 3082 170636 1.77 173718 35 3966 170130 2.28 174096 36 2955 171618 1.69 174573 37 2808 166332 1.66 169140 38 3649 169873 2.10 173522 39 2744 169459 1.59 172203 40 2667 169081 1.55 171748 41 2665 168199 1.56 170864 42 2503 170306 1.45 172809 43 2523 166597 1.49 169120 44 2615 169804 1.52 172419 45 2606 169703 1.51 172309 46 2808 166135 1.66 168943 47 3074 168277 1.79 171351 48 2658 172175 1.52 174833 49 2859 166842 1.68 169701 50 3157 168155 1.84 171312 51 2709 169097 1.58 171806 52 2940 168661 1.71 171601 53 2927 167123 1.72 170050 54 3306 170423 1.90 173729 55 2937 167234 1.73 170171 56 3381 168723 1.96 172104 57 3206 168461 1.87 171667 58 3043 166475 1.80 169518 59 3432 167224 2.01 170656 60 3121 168488 1.82 171609 61 3228 164753 1.92 167981 62 3523 165531 2.08 169054 63 3426 164228 2.04 167654 64 3646 164305 2.17 167951 65 4741 161695 2.85 166436 66 3448 159269 2.12 162717 67 3546 155015 2.24 158561 68 4153 157099 2.58 161252 69 3055 155368 1.93 158423 70 2986 151565 1.93 154551 71 3138 151016 2.04 154154 72 3126 151197 2.03 154323 73 3042 148995 2.00 152037 74 3775 148770 2.47 152545 75 2867 148097 1.90 150964 76 2873 143833 1.96 146706 77 3801 144607 2.56 148408 78 2901 141415 2.01 144316 79 2955 138792 2.08 141747 80 2870 138385 2.03 141255 81 2835 136052 2.04 138887 82 2754 133927 2.01 136681 83 3038 135764 2.19 138802 84 2936 136734 2.10 139670 85 2793 132223 2.07 135016 86 3125 133686 2.28 136811 87 2766 134103 2.02 136869 88 2805 130024 2.11 132829 89 2948 128533 2.24 131481 90 2748 129482 2.08 132230 91 2839 126377 2.20 129216 92 2952 125896 2.29 128848 93 3176 124849 2.48 128025 94 2928 122515 2.33 125443 95 3061 121817 2.45 124878 96 3040 120651 2.46 123691 97 3172 110927 2.78 114099 98 3002 102061 2.86 105063 99 1534 65913 2.27 67447 100 2330 66319 3.39 68649 101 4228 110218 3.69 114446 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152872 231868 39.73 384740 2 107077 246163 30.31 353240 3 71928 277706 20.57 349634 4 69888 292500 19.29 362388 5 69899 340982 17.01 410881 6 59562 368679 13.91 428241 7 42304 461399 8.40 503703 8 42366 498431 7.83 540797 9 31546 462760 6.38 494306 10 31501 453369 6.50 484870 11 42854 454132 8.62 496986 12 34579 459118 7.00 493697 13 39171 469563 7.70 508734 14 44959 481716 8.54 526675 15 36495 491156 6.92 527651 16 36400 497267 6.82 533667 17 45092 497927 8.30 543019 18 35258 517507 6.38 552765 19 35454 525547 6.32 561001 20 43037 542141 7.35 585178 21 36059 543867 6.22 579926 22 39558 540838 6.82 580396 23 43817 542907 7.47 586724 24 36302 543324 6.26 579626 25 40195 546361 6.85 586556 26 44508 549998 7.49 594506 27 36995 552821 6.27 589816 28 36195 555367 6.12 591562 29 44169 553442 7.39 597611 30 36590 550334 6.23 586924 31 38105 543025 6.56 581130 32 41928 546770 7.12 588698 33 36831 546355 6.32 583186 34 42506 550651 7.17 593157 35 44083 543238 7.51 587321 36 37093 552257 6.29 589350 37 36354 545410 6.25 581764 38 43792 549548 7.38 593340 39 35384 545695 6.09 581079 40 36582 544728 6.29 581310 41 43944 547002 7.44 590946 42 37326 553130 6.32 590456 43 41653 546403 7.08 588056 44 43154 551068 7.26 594222 45 38928 546329 6.65 585257 46 37700 545955 6.46 583655 47 42873 545530 7.29 588403 48 34805 546131 5.99 580936 49 35842 538738 6.24 574580 50 41601 537682 7.18 579283 51 34611 532049 6.11 566660 52 38762 532079 6.79 570841 53 42806 527063 7.51 569869 54 35762 527943 6.34 563705 55 37179 524700 6.62 561879 56 42652 522668 7.54 565320 57 34692 530211 6.14 564903 58 36084 524713 6.43 560797 59 41909 524901 7.39 566810 60 34478 518344 6.24 552822 61 37617 514043 6.82 551660 62 40323 507894 7.36 548217 63 34195 502272 6.37 536467 64 37542 499706 6.99 537248 65 39502 494254 7.40 533756 66 33633 489821 6.43 523454 67 33705 486280 6.48 519985 68 38445 481948 7.39 520393 69 32784 480334 6.39 513118 70 33243 475996 6.53 509239 71 38335 474088 7.48 512423 72 32989 471201 6.54 504190 73 37150 463868 7.41 501018 74 38046 461109 7.62 499155 75 32696 457049 6.68 489745 76 32727 452742 6.74 485469 77 38268 448307 7.86 486575 78 30009 445468 6.31 475477 79 31564 439868 6.70 471432 80 36947 436326 7.81 473273 81 32133 431256 6.93 463389 82 34235 424851 7.46 459086 83 37423 425633 8.08 463056 84 32053 420302 7.09 452355 85 31064 414101 6.98 445165 86 35041 411157 7.85 446198 87 29461 408150 6.73 437611 88 29405 404196 6.78 433601 89 34842 399375 8.02 434217 90 28783 397553 6.75 426336 91 31013 390958 7.35 421971 92 33182 390398 7.83 423580 93 28800 385759 6.95 414559 94 29104 382184 7.08 411288 95 33264 376963 8.11 410227 96 27299 371934 6.84 399233 97 27035 361610 6.96 388645 98 30124 337336 8.20 367460 99 16175 234386 6.46 250561 100 18829 208519 8.28 227348 101 29139 341213 7.87 370352 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 68662 73982 48.14 142644 2 58361 61837 48.55 120198 3 61605 70274 46.71 131879 4 55802 76316 42.24 132118 5 24624 98254 20.04 122878 6 15334 54319 22.01 69653 7 13034 57669 18.43 70703 8 13833 52784 20.76 66617 9 11675 46125 20.20 57800 10 13221 51417 20.45 64638 11 13972 50072 21.82 64044 12 13654 48990 21.80 62644 13 14101 46852 23.13 60953 14 14660 48608 23.17 63268 15 14081 44741 23.94 58822 16 13448 41989 24.26 55437 17 16721 46168 26.59 62889 18 15663 44991 25.82 60654 19 14717 43891 25.11 58608 20 13788 42980 24.29 56768 21 14370 41773 25.60 56143 22 14392 43191 24.99 57583 23 13759 41220 25.03 54979 24 12735 38278 24.96 51013 25 14179 41340 25.54 55519 26 13045 39129 25.00 52174 27 14376 39961 26.46 54337 28 12900 37470 25.61 50370 29 13467 39124 25.61 52591 30 13027 36224 26.45 49251 31 12528 37344 25.12 49872 32 12161 35248 25.65 47409 33 13682 36747 27.13 50429 34 13193 38689 25.43 51882 35 16204 40522 28.57 56726 36 12900 34819 27.03 47719 37 13480 36839 26.79 50319 38 12055 35066 25.58 47121 39 12308 34691 26.19 46999 40 13424 34973 27.74 48397 41 11850 34698 25.46 46548 42 12353 35632 25.74 47985 43 11917 33453 26.27 45370 44 11513 32946 25.90 44459 45 14135 37639 27.30 51774 46 11083 30857 26.43 41940 47 11056 32260 25.52 43316 48 11355 31136 26.72 42491 49 10706 33547 24.19 44253 50 10342 29655 25.86 39997 51 10336 28880 26.36 39216 52 10395 29613 25.98 40008 53 10476 29105 26.47 39581 54 10302 29295 26.02 39597 55 10296 28053 26.85 38349 56 9629 28219 25.44 37848 57 9992 27756 26.47 37748 58 9738 27918 25.86 37656 59 9003 25990 25.73 34993 60 9105 27199 25.08 36304 61 8354 25455 24.71 33809 62 8372 24092 25.79 32464 63 9136 24571 27.10 33707 64 8751 23944 26.77 32695 65 8601 23052 27.17 31653 66 8954 24497 26.77 33451 67 8217 24556 25.07 32773 68 9044 25615 26.09 34659 69 8234 22480 26.81 30714 70 7802 22328 25.89 30130 71 8056 21375 27.37 29431 72 7642 20878 26.80 28520 73 7721 21867 26.10 29588 74 6946 20942 24.91 27888 75 7058 21104 25.06 28162 76 7438 20254 26.86 27692 77 7072 19669 26.45 26741 78 6988 19639 26.24 26627 79 6810 19396 25.99 26206 80 6579 19107 25.61 25686 81 6763 18879 26.37 25642 82 6632 19119 25.75 25751 83 6721 18395 26.76 25116 84 7470 19541 27.66 27011 85 6532 18409 26.19 24941 86 6283 18221 25.64 24504 87 6294 17441 26.52 23735 88 6188 17078 26.60 23266 89 6499 17778 26.77 24277 90 6536 18095 26.54 24631 91 6111 17268 26.14 23379 92 5772 17020 25.32 22792 93 6113 17160 26.27 23273 94 6143 16668 26.93 22811 95 6015 16461 26.76 22476 96 5967 16570 26.48 22537 97 6345 17474 26.64 23819 98 5642 15908 26.18 21550 99 5108 0 100.00 5108 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21827 94468 18.77 116295 2 20752 93862 18.11 114614 3 19889 96232 17.13 116121 4 21314 104870 16.89 126184 5 3708 188415 1.93 192123 6 2453 230372 1.05 232825 7 1682 127364 1.30 129046 8 1578 139450 1.12 141028 9 1569 113795 1.36 115364 10 1587 108792 1.44 110379 11 2279 152879 1.47 155158 12 1735 115369 1.48 117104 13 1670 115780 1.42 117450 14 1764 110668 1.57 112432 15 1629 106232 1.51 107861 16 1410 99112 1.40 100522 17 1765 107937 1.61 109702 18 2438 94849 2.51 97287 19 1632 92669 1.73 94301 20 1618 92138 1.73 93756 21 2418 88071 2.67 90489 22 1813 97891 1.82 99704 23 1683 96722 1.71 98405 24 1507 85128 1.74 86635 25 1518 87014 1.71 88532 26 1683 93216 1.77 94899 27 1552 85921 1.77 87473 28 1541 82305 1.84 83846 29 1548 87969 1.73 89517 30 1596 83844 1.87 85440 31 1488 81025 1.80 82513 32 1444 83331 1.70 84775 33 1584 101012 1.54 102596 34 1402 80501 1.71 81903 35 1524 85080 1.76 86604 36 1431 84057 1.67 85488 37 1373 76394 1.77 77767 38 1587 83435 1.87 85022 39 1589 78128 1.99 79717 40 1478 76465 1.90 77943 41 1479 72474 2.00 73953 42 1581 67869 2.28 69450 43 1680 71105 2.31 72785 44 1454 70240 2.03 71694 45 1385 64425 2.10 65810 46 1383 64933 2.09 66316 47 1515 67996 2.18 69511 48 1389 64174 2.12 65563 49 1486 66569 2.18 68055 50 1532 65189 2.30 66721 51 1441 59754 2.35 61195 52 1541 58371 2.57 59912 53 1716 65761 2.54 67477 54 1434 61134 2.29 62568 55 1314 60716 2.12 62030 56 1296 60166 2.11 61462 57 1737 57294 2.94 59031 58 1266 57277 2.16 58543 59 1131 56760 1.95 57891 60 1311 55639 2.30 56950 61 1070 54814 1.91 55884 62 978 57209 1.68 58187 63 930 57245 1.60 58175 64 842 50896 1.63 51738 65 905 54294 1.64 55199 66 891 50098 1.75 50989 67 873 54746 1.57 55619 68 800 54052 1.46 54852 69 909 51349 1.74 52258 70 789 50949 1.52 51738 71 829 52537 1.55 53366 72 789 48856 1.59 49645 73 718 47845 1.48 48563 74 755 50312 1.48 51067 75 757 47425 1.57 48182 76 727 45903 1.56 46630 77 751 48878 1.51 49629 78 780 45813 1.67 46593 79 762 45290 1.65 46052 80 684 44575 1.51 45259 81 769 42783 1.77 43552 82 731 43163 1.67 43894 83 680 43571 1.54 44251 84 678 41320 1.61 41998 85 763 46249 1.62 47012 86 750 41544 1.77 42294 87 721 41491 1.71 42212 88 696 38734 1.77 39430 89 764 42611 1.76 43375 90 780 41132 1.86 41912 91 737 42469 1.71 43206 92 713 40768 1.72 41481 93 643 38739 1.63 39382 94 595 38307 1.53 38902 95 732 39997 1.80 40729 96 874 37599 2.27 38473 97 661 36976 1.76 37637 98 638 36786 1.70 37424 99 628 0 100.00 628 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 49688 130907 27.51 180595 2 45477 108083 29.62 153560 3 48514 109644 30.67 158158 4 49826 105857 32.00 155683 5 22627 218111 9.40 240738 6 21333 288835 6.88 310168 7 22088 384996 5.43 407084 8 20179 376618 5.09 396797 9 23673 354677 6.26 378350 10 21290 364380 5.52 385670 11 21224 359334 5.58 380558 12 19764 333485 5.59 353249 13 19723 348547 5.36 368270 14 19365 349455 5.25 368820 15 19446 359247 5.14 378693 16 17470 343636 4.84 361106 17 18378 345926 5.04 364304 18 17893 343165 4.96 361058 19 16935 318255 5.05 335190 20 18793 336622 5.29 355415 21 18217 319421 5.40 337638 22 18750 307601 5.75 326351 23 18393 301440 5.75 319833 24 17191 287050 5.65 304241 25 18390 286711 6.03 305101 26 17474 283054 5.81 300528 27 18535 307801 5.68 326336 28 17136 290436 5.57 307572 29 17296 287620 5.67 304916 30 18527 275724 6.30 294251 31 17474 268822 6.10 286296 32 17040 260537 6.14 277577 33 18409 258438 6.65 276847 34 17691 258326 6.41 276017 35 17567 266882 6.18 284449 36 16250 266438 5.75 282688 37 16093 261499 5.80 277592 38 16831 274748 5.77 291579 39 17037 248586 6.41 265623 40 16184 261501 5.83 277685 41 16400 243752 6.30 260152 42 16318 249850 6.13 266168 43 16428 234212 6.55 250640 44 15308 234068 6.14 249376 45 15666 232691 6.31 248357 46 14510 234663 5.82 249173 47 14521 230508 5.93 245029 48 15101 224095 6.31 239196 49 14217 227993 5.87 242210 50 14437 221632 6.12 236069 51 14406 214813 6.28 229219 52 13764 202756 6.36 216520 53 13192 205073 6.04 218265 54 12730 198233 6.03 210963 55 12600 207079 5.74 219679 56 12460 200097 5.86 212557 57 12372 205463 5.68 217835 58 11770 198128 5.61 209898 59 12130 189522 6.02 201652 60 11939 194845 5.77 206784 61 12145 184334 6.18 196479 62 11393 184396 5.82 195789 63 11058 185918 5.61 196976 64 11321 179962 5.92 191283 65 10849 183311 5.59 194160 66 10924 174996 5.88 185920 67 10141 175754 5.46 185895 68 10514 182373 5.45 192887 69 10990 178104 5.81 189094 70 10144 171694 5.58 181838 71 10213 168462 5.72 178675 72 10646 167434 5.98 178080 73 10423 163078 6.01 173501 74 9678 165426 5.53 175104 75 9932 164495 5.69 174427 76 9472 158593 5.64 168065 77 9951 156913 5.96 166864 78 10117 160561 5.93 170678 79 9675 161746 5.64 171421 80 9711 154179 5.93 163890 81 10182 155732 6.14 165914 82 9610 152466 5.93 162076 83 9282 151756 5.76 161038 84 9538 152461 5.89 161999 85 8771 148870 5.56 157641 86 8711 147253 5.59 155964 87 9217 146410 5.92 155627 88 8498 142658 5.62 151156 89 8570 140667 5.74 149237 90 8951 141612 5.95 150563 91 8564 140032 5.76 148596 92 8010 138618 5.46 146628 93 8047 136569 5.56 144616 94 7631 134561 5.37 142192 95 7863 131506 5.64 139369 96 7738 131561 5.55 139299 97 7349 131709 5.28 139058 98 6859 125021 5.20 131880 99 5050 0 100.00 5050