Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-220_S32_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-220_S32_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 15670592
Paired-end alignments with a unique best hit 7812000
Pairs without alignments under any condition 6437579
Pairs that did not map uniquely 1421013
Genomic sequence context not extractable (edges of chromosomes) 18

Cytosine Methylation

Total C's analysed 241180813
Methylated C's in CpG context 8360975
Methylated C's in CHG context 1444434
Methylated C's in CHH context 9329429
Methylated C's in Unknown context 348452
Unmethylated C's in CpG context 25279896
Unmethylated C's in CHG context 50350749
Unmethylated C's in CHH context 146415330
Unmethylated C's in Unknown context 1649919
Percentage methylation (CpG context) 24.9%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 6.0%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3807899 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4004083 original bottom strand