CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 117099 167535 41.14 284634 2 112011 186807 37.48 298818 3 108020 164439 39.65 272459 4 114876 130002 46.91 244878 5 111438 110539 50.20 221977 6 113818 94907 54.53 208725 7 125704 97388 56.35 223092 8 60773 107437 36.13 168210 9 54087 99126 35.30 153213 10 54003 96741 35.82 150744 11 57029 100866 36.12 157895 12 54889 102602 34.85 157491 13 53932 106259 33.67 160191 14 51516 107543 32.39 159059 15 50522 109421 31.59 159943 16 46652 108201 30.13 154853 17 44765 105615 29.77 150380 18 45522 108148 29.62 153670 19 44292 109018 28.89 153310 20 44735 109866 28.94 154601 21 44670 111060 28.68 155730 22 44066 109773 28.64 153839 23 43651 109107 28.58 152758 24 43593 109408 28.49 153001 25 42639 109077 28.10 151716 26 43149 107154 28.71 150303 27 42916 110853 27.91 153769 28 43779 109951 28.48 153730 29 42878 111424 27.79 154302 30 42353 110908 27.63 153261 31 42828 108252 28.35 151080 32 42059 106776 28.26 148835 33 42081 107086 28.21 149167 34 43463 106347 29.01 149810 35 42644 106516 28.59 149160 36 42359 108609 28.06 150968 37 40658 105657 27.79 146315 38 40076 104563 27.71 144639 39 41843 106512 28.20 148355 40 41532 105206 28.30 146738 41 41111 104994 28.14 146105 42 41642 107379 27.94 149021 43 41411 105065 28.27 146476 44 40856 105048 28.00 145904 45 41160 105215 28.12 146375 46 41928 106243 28.30 148171 47 41259 103701 28.46 144960 48 40796 104636 28.05 145432 49 42033 105277 28.53 147310 50 40576 106663 27.56 147239 51 40839 105788 27.85 146627 52 41759 110092 27.50 151851 53 40561 104199 28.02 144760 54 39897 103388 27.84 143285 55 39501 101005 28.11 140506 56 39727 100643 28.30 140370 57 41082 102954 28.52 144036 58 41293 103123 28.59 144416 59 41800 101539 29.16 143339 60 40769 102390 28.48 143159 61 41202 100961 28.98 142163 62 40162 101179 28.41 141341 63 39873 99462 28.62 139335 64 39182 99080 28.34 138262 65 39727 97293 28.99 137020 66 39827 97691 28.96 137518 67 39243 95621 29.10 134864 68 38678 95292 28.87 133970 69 38090 94455 28.74 132545 70 37742 93322 28.80 131064 71 36850 91994 28.60 128844 72 36643 90901 28.73 127544 73 35970 90108 28.53 126078 74 36103 89396 28.77 125499 75 34599 89185 27.95 123784 76 34673 87705 28.33 122378 77 35227 87394 28.73 122621 78 34877 87098 28.59 121975 79 34140 85619 28.51 119759 80 33366 85705 28.02 119071 81 33181 84207 28.27 117388 82 32166 82965 27.94 115131 83 32654 83452 28.12 116106 84 32697 83054 28.25 115751 85 32355 81149 28.51 113504 86 31110 80598 27.85 111708 87 30517 79402 27.76 109919 88 30802 79429 27.94 110231 89 29989 77450 27.91 107439 90 30029 77715 27.87 107744 91 29412 76004 27.90 105416 92 29113 76751 27.50 105864 93 29178 75773 27.80 104951 94 29055 74418 28.08 103473 95 28597 73668 27.96 102265 96 28263 75031 27.36 103294 97 27651 72338 27.65 99989 98 26026 67942 27.70 93968 99 20573 53135 27.91 73708 100 26949 66591 28.81 93540 101 25382 68351 27.08 93733 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 158375 220391 41.81 378766 2 95420 212529 30.99 307949 3 41141 207345 16.56 248486 4 23321 203311 10.29 226632 5 15238 187407 7.52 202645 6 14779 184383 7.42 199162 7 10508 226382 4.44 236890 8 5285 243301 2.13 248586 9 4185 231990 1.77 236175 10 4211 225787 1.83 229998 11 4620 228495 1.98 233115 12 4406 231863 1.86 236269 13 4303 223471 1.89 227774 14 3872 222411 1.71 226283 15 4102 230084 1.75 234186 16 3506 229352 1.51 232858 17 3870 226991 1.68 230861 18 3477 227492 1.51 230969 19 3212 225794 1.40 229006 20 3335 239574 1.37 242909 21 3066 242066 1.25 245132 22 3535 237622 1.47 241157 23 3598 239726 1.48 243324 24 3452 244275 1.39 247727 25 3393 234516 1.43 237909 26 4535 237531 1.87 242066 27 3364 241272 1.38 244636 28 3156 240371 1.30 243527 29 4000 241882 1.63 245882 30 3227 246680 1.29 249907 31 3170 238872 1.31 242042 32 3054 241472 1.25 244526 33 3269 241641 1.33 244910 34 3310 238455 1.37 241765 35 3910 238188 1.62 242098 36 3254 239787 1.34 243041 37 3277 231865 1.39 235142 38 3800 236391 1.58 240191 39 3222 234849 1.35 238071 40 3322 234306 1.40 237628 41 3094 234341 1.30 237435 42 3017 235959 1.26 238976 43 3107 231624 1.32 234731 44 3058 235153 1.28 238211 45 3116 235305 1.31 238421 46 3191 231704 1.36 234895 47 3353 232514 1.42 235867 48 3013 238075 1.25 241088 49 3114 231508 1.33 234622 50 3364 230593 1.44 233957 51 3130 234215 1.32 237345 52 3187 233055 1.35 236242 53 3327 230828 1.42 234155 54 3553 234993 1.49 238546 55 3298 231052 1.41 234350 56 3572 233825 1.50 237397 57 3539 232011 1.50 235550 58 3646 230603 1.56 234249 59 3922 231514 1.67 235436 60 3565 231901 1.51 235466 61 3766 227748 1.63 231514 62 3936 227772 1.70 231708 63 3770 226536 1.64 230306 64 3964 224852 1.73 228816 65 4645 222415 2.05 227060 66 3760 219382 1.69 223142 67 3839 212526 1.77 216365 68 4266 215065 1.95 219331 69 3470 214398 1.59 217868 70 3542 207682 1.68 211224 71 3612 207339 1.71 210951 72 3477 207869 1.65 211346 73 3568 204963 1.71 208531 74 3836 202485 1.86 206321 75 3423 202652 1.66 206075 76 3319 196527 1.66 199846 77 3828 196828 1.91 200656 78 3322 193700 1.69 197022 79 3474 190333 1.79 193807 80 3270 188863 1.70 192133 81 3258 185902 1.72 189160 82 3188 183356 1.71 186544 83 3381 185548 1.79 188929 84 3142 185823 1.66 188965 85 3372 181651 1.82 185023 86 3443 183310 1.84 186753 87 3222 183179 1.73 186401 88 3136 178727 1.72 181863 89 3243 176414 1.81 179657 90 3043 175947 1.70 178990 91 3316 171797 1.89 175113 92 3336 172810 1.89 176146 93 3582 170360 2.06 173942 94 3338 167222 1.96 170560 95 3425 165235 2.03 168660 96 3480 165163 2.06 168643 97 3419 150525 2.22 153944 98 3263 139734 2.28 142997 99 1809 89420 1.98 91229 100 2439 90823 2.62 93262 101 4509 150858 2.90 155367 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 201716 306795 39.67 508511 2 119608 331710 26.50 451318 3 70608 381659 15.61 452267 4 65157 399801 14.01 464958 5 62666 471688 11.73 534354 6 52617 508504 9.38 561121 7 40893 641267 5.99 682160 8 33669 687987 4.67 721656 9 25536 638541 3.85 664077 10 25560 626715 3.92 652275 11 32500 627969 4.92 660469 12 27261 634650 4.12 661911 13 30697 648126 4.52 678823 14 33525 666169 4.79 699694 15 28388 683614 3.99 712002 16 27495 693179 3.82 720674 17 32708 695143 4.49 727851 18 27126 719752 3.63 746878 19 27179 732061 3.58 759240 20 32128 759969 4.06 792097 21 27489 758218 3.50 785707 22 29504 759828 3.74 789332 23 32554 757910 4.12 790464 24 27496 757591 3.50 785087 25 29672 761903 3.75 791575 26 32941 767498 4.12 800439 27 27952 769207 3.51 797159 28 27411 773245 3.42 800656 29 32822 769949 4.09 802771 30 27748 763241 3.51 790989 31 28450 752727 3.64 781177 32 30908 756229 3.93 787137 33 27782 754511 3.55 782293 34 31842 760799 4.02 792641 35 32733 753488 4.16 786221 36 28236 761408 3.58 789644 37 27028 754241 3.46 781269 38 32550 758957 4.11 791507 39 27416 753678 3.51 781094 40 27768 751021 3.57 778789 41 32258 755826 4.09 788084 42 28668 761982 3.63 790650 43 30388 751394 3.89 781782 44 31682 759714 4.00 791396 45 28805 752038 3.69 780843 46 28027 753411 3.59 781438 47 31104 748135 3.99 779239 48 26217 749929 3.38 776146 49 26908 739539 3.51 766447 50 30242 741172 3.92 771414 51 26186 731191 3.46 757377 52 28469 728811 3.76 757280 53 30982 722771 4.11 753753 54 26786 723477 3.57 750263 55 27581 719893 3.69 747474 56 31009 718039 4.14 749048 57 25808 726331 3.43 752139 58 26722 719603 3.58 746325 59 30628 720309 4.08 750937 60 25596 710739 3.48 736335 61 28113 702649 3.85 730762 62 29345 694417 4.05 723762 63 26224 687010 3.68 713234 64 27960 680765 3.95 708725 65 28835 675929 4.09 704764 66 25121 669045 3.62 694166 67 25009 663303 3.63 688312 68 28011 659897 4.07 687908 69 24307 653539 3.59 677846 70 25004 649149 3.71 674153 71 27736 645094 4.12 672830 72 24444 642323 3.67 666767 73 26891 631172 4.09 658063 74 27415 628650 4.18 656065 75 24185 623068 3.74 647253 76 23927 617770 3.73 641697 77 27396 611988 4.28 639384 78 22357 604001 3.57 626358 79 23106 600855 3.70 623961 80 26503 595624 4.26 622127 81 23450 587187 3.84 610637 82 24852 578838 4.12 603690 83 26805 580392 4.41 607197 84 23225 572968 3.90 596193 85 22354 565611 3.80 587965 86 24972 558341 4.28 583313 87 21788 553939 3.78 575727 88 21874 550426 3.82 572300 89 25000 542691 4.40 567691 90 21295 540201 3.79 561496 91 22395 531265 4.04 553660 92 23652 532166 4.26 555818 93 21250 525529 3.89 546779 94 21399 519322 3.96 540721 95 23897 512619 4.45 536516 96 19988 504058 3.81 524046 97 20130 491038 3.94 511168 98 21515 457864 4.49 479379 99 12267 316775 3.73 329042 100 14109 281785 4.77 295894 101 21120 461935 4.37 483055 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 105651 105351 50.07 211002 2 88184 85372 50.81 173556 3 93533 98199 48.78 191732 4 82813 105038 44.08 187851 5 37118 133461 21.76 170579 6 23666 74884 24.01 98550 7 19574 80449 19.57 100023 8 20594 72708 22.07 93302 9 17501 62605 21.85 80106 10 19407 70002 21.71 89409 11 20949 69115 23.26 90064 12 20368 67480 23.19 87848 13 20925 63361 24.83 84286 14 21653 66487 24.57 88140 15 21530 61108 26.05 82638 16 19476 57669 25.25 77145 17 24846 63828 28.02 88674 18 23382 62248 27.31 85630 19 22675 60183 27.37 82858 20 20650 59451 25.78 80101 21 21468 57472 27.20 78940 22 21684 58992 26.88 80676 23 20308 56612 26.40 76920 24 18662 52467 26.24 71129 25 21298 56282 27.45 77580 26 19540 52920 26.97 72460 27 21412 55205 27.95 76617 28 19292 51522 27.24 70814 29 20363 54100 27.35 74463 30 19128 50110 27.63 69238 31 18615 50449 26.95 69064 32 17810 47962 27.08 65772 33 20262 49475 29.05 69737 34 19476 51520 27.43 70996 35 24124 56056 30.09 80180 36 19289 47316 28.96 66605 37 20135 49976 28.72 70111 38 17955 47206 27.55 65161 39 18455 46290 28.50 64745 40 20462 46683 30.47 67145 41 17538 46044 27.58 63582 42 18200 48180 27.42 66380 43 17570 44981 28.09 62551 44 16622 43995 27.42 60617 45 21217 50491 29.59 71708 46 16440 40937 28.65 57377 47 16609 42618 28.04 59227 48 16891 41926 28.72 58817 49 15793 43750 26.52 59543 50 15112 39437 27.70 54549 51 15408 38425 28.62 53833 52 15287 39539 27.88 54826 53 15458 38668 28.56 54126 54 15089 38671 28.07 53760 55 15323 37533 28.99 52856 56 13882 38198 26.66 52080 57 14398 36962 28.03 51360 58 14096 36780 27.71 50876 59 13331 34269 28.01 47600 60 13500 35715 27.43 49215 61 12498 33533 27.15 46031 62 12362 31986 27.87 44348 63 13516 32799 29.18 46315 64 12676 32041 28.35 44717 65 12436 30547 28.93 42983 66 13158 32194 29.01 45352 67 11813 32772 26.50 44585 68 13665 34274 28.50 47939 69 12027 29941 28.66 41968 70 11528 29973 27.78 41501 71 12087 28462 29.81 40549 72 11004 28080 28.15 39084 73 11428 28709 28.47 40137 74 10246 27892 26.87 38138 75 10398 27718 27.28 38116 76 10864 26877 28.79 37741 77 10437 26465 28.28 36902 78 10403 26568 28.14 36971 79 10057 26183 27.75 36240 80 9730 25833 27.36 35563 81 9837 25328 27.97 35165 82 9875 25494 27.92 35369 83 10040 24638 28.95 34678 84 11270 26735 29.65 38005 85 9218 24501 27.34 33719 86 9084 23712 27.70 32796 87 9142 23367 28.12 32509 88 9279 23276 28.50 32555 89 9828 24174 28.90 34002 90 9509 23797 28.55 33306 91 8937 22881 28.09 31818 92 8462 22801 27.07 31263 93 8778 22581 27.99 31359 94 9020 22512 28.61 31532 95 8934 21948 28.93 30882 96 8438 22363 27.40 30801 97 9532 23812 28.59 33344 98 8435 21313 28.35 29748 99 7496 0 100.00 7496 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30438 134698 18.43 165136 2 27727 129889 17.59 157616 3 26578 134104 16.54 160682 4 28303 148168 16.04 176471 5 4097 262339 1.54 266436 6 2948 324305 0.90 327253 7 1911 181343 1.04 183254 8 1867 198185 0.93 200052 9 1672 159539 1.04 161211 10 1728 153538 1.11 155266 11 2489 220968 1.11 223457 12 1835 164084 1.11 165919 13 1797 164953 1.08 166750 14 1863 156130 1.18 157993 15 1780 150942 1.17 152722 16 1605 139621 1.14 141226 17 1930 152437 1.25 154367 18 2352 132668 1.74 135020 19 1963 132197 1.46 134160 20 1938 130889 1.46 132827 21 2671 124010 2.11 126681 22 2174 138439 1.55 140613 23 2001 137514 1.43 139515 24 1783 120559 1.46 122342 25 1901 122515 1.53 124416 26 2044 130546 1.54 132590 27 1867 120523 1.53 122390 28 1894 115382 1.61 117276 29 1970 123179 1.57 125149 30 2097 119406 1.73 121503 31 1915 114036 1.65 115951 32 1749 115166 1.50 116915 33 2117 143652 1.45 145769 34 1854 112701 1.62 114555 35 2013 119203 1.66 121216 36 1906 118505 1.58 120411 37 1777 106243 1.65 108020 38 1941 116994 1.63 118935 39 1905 107308 1.74 109213 40 1860 105065 1.74 106925 41 1756 100622 1.72 102378 42 1950 94247 2.03 96197 43 2076 98961 2.05 101037 44 1734 96261 1.77 97995 45 1691 89259 1.86 90950 46 1690 89293 1.86 90983 47 1876 93258 1.97 95134 48 1754 88075 1.95 89829 49 1755 93040 1.85 94795 50 1812 88988 2.00 90800 51 1674 83027 1.98 84701 52 1690 81192 2.04 82882 53 1980 92263 2.10 94243 54 1709 84542 1.98 86251 55 1548 83153 1.83 84701 56 1447 82602 1.72 84049 57 1727 78281 2.16 80008 58 1343 77451 1.70 78794 59 1284 78622 1.61 79906 60 1312 76135 1.69 77447 61 1071 75985 1.39 77056 62 1029 79082 1.28 80111 63 1037 78042 1.31 79079 64 853 70738 1.19 71591 65 993 74957 1.31 75950 66 861 68826 1.24 69687 67 946 75992 1.23 76938 68 846 73496 1.14 74342 69 951 71165 1.32 72116 70 877 70964 1.22 71841 71 943 73162 1.27 74105 72 895 66879 1.32 67774 73 759 66059 1.14 66818 74 789 68668 1.14 69457 75 724 65504 1.09 66228 76 775 63443 1.21 64218 77 758 67024 1.12 67782 78 796 62819 1.25 63615 79 763 62344 1.21 63107 80 750 61208 1.21 61958 81 814 59396 1.35 60210 82 760 59272 1.27 60032 83 689 59964 1.14 60653 84 715 56927 1.24 57642 85 725 64844 1.11 65569 86 751 57077 1.30 57828 87 694 56840 1.21 57534 88 656 53244 1.22 53900 89 768 58301 1.30 59069 90 847 56530 1.48 57377 91 766 58738 1.29 59504 92 765 55715 1.35 56480 93 668 53016 1.24 53684 94 680 52329 1.28 53009 95 760 54517 1.37 55277 96 821 51756 1.56 52577 97 734 50926 1.42 51660 98 638 50730 1.24 51368 99 557 0 100.00 557 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51049 178919 22.20 229968 2 44383 145578 23.36 189961 3 45889 149391 23.50 195280 4 46562 146020 24.18 192582 5 16429 302228 5.16 318657 6 15785 400639 3.79 416424 7 16594 537738 2.99 554332 8 15378 524385 2.85 539763 9 17549 491124 3.45 508673 10 16406 510218 3.12 526624 11 15648 502020 3.02 517668 12 14966 467623 3.10 482589 13 15052 488306 2.99 503358 14 14837 491279 2.93 506116 15 14721 510171 2.80 524892 16 13618 490757 2.70 504375 17 14397 491725 2.84 506122 18 13800 485564 2.76 499364 19 12866 442851 2.82 455717 20 14725 475672 3.00 490397 21 13904 447475 3.01 461379 22 14615 430579 3.28 445194 23 13924 421625 3.20 435549 24 13110 402676 3.15 415786 25 14356 400262 3.46 414618 26 13529 397740 3.29 411269 27 14294 431612 3.21 445906 28 13262 405280 3.17 418542 29 13213 398992 3.21 412205 30 14227 383386 3.58 397613 31 13502 373408 3.49 386910 32 12972 360522 3.47 373494 33 13751 358338 3.70 372089 34 13546 359573 3.63 373119 35 14173 370814 3.68 384987 36 12698 366148 3.35 378846 37 12581 361509 3.36 374090 38 13014 383133 3.29 396147 39 13118 341817 3.70 354935 40 12661 362026 3.38 374687 41 12472 335968 3.58 348440 42 12533 347366 3.48 359899 43 12699 323037 3.78 335736 44 11687 320850 3.51 332537 45 11970 319865 3.61 331835 46 11374 323324 3.40 334698 47 11122 315322 3.41 326444 48 11397 306506 3.59 317903 49 10822 314891 3.32 325713 50 10662 304149 3.39 314811 51 11063 295195 3.61 306258 52 10351 279228 3.57 289579 53 9820 279949 3.39 289769 54 9514 272873 3.37 282387 55 9709 286016 3.28 295725 56 9464 273166 3.35 282630 57 9201 283030 3.15 292231 58 8595 271515 3.07 280110 59 8787 258204 3.29 266991 60 8724 267430 3.16 276154 61 8877 254053 3.38 262930 62 8068 252453 3.10 260521 63 8039 256827 3.04 264866 64 8320 246788 3.26 255108 65 7713 251605 2.97 259318 66 7839 239958 3.16 247797 67 7516 242693 3.00 250209 68 7499 252745 2.88 260244 69 7852 244106 3.12 251958 70 7311 234792 3.02 242103 71 7264 230032 3.06 237296 72 7728 228631 3.27 236359 73 7415 226339 3.17 233754 74 7028 226255 3.01 233283 75 6937 225302 2.99 232239 76 6779 216278 3.04 223057 77 7032 215753 3.16 222785 78 7130 219187 3.15 226317 79 6848 222394 2.99 229242 80 6893 212335 3.14 219228 81 7112 214156 3.21 221268 82 6772 209533 3.13 216305 83 6689 209000 3.10 215689 84 6665 207411 3.11 214076 85 6257 204502 2.97 210759 86 6073 202319 2.91 208392 87 6509 201140 3.13 207649 88 6106 193686 3.06 199792 89 6101 193051 3.06 199152 90 6340 194227 3.16 200567 91 6093 191931 3.08 198024 92 5822 189905 2.97 195727 93 5688 186961 2.95 192649 94 5511 185689 2.88 191200 95 5635 181479 3.01 187114 96 5447 178931 2.95 184378 97 5181 180654 2.79 185835 98 4718 173171 2.65 177889 99 3597 0 100.00 3597