Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-215_S31_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-215_S31_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 21150005
Paired-end alignments with a unique best hit 10236960
Pairs without alignments under any condition 8937067
Pairs that did not map uniquely 1975978
Genomic sequence context not extractable (edges of chromosomes) 24

Cytosine Methylation

Total C's analysed 306752449
Methylated C's in CpG context 11752174
Methylated C's in CHG context 1777591
Methylated C's in CHH context 7279068
Methylated C's in Unknown context 275365
Unmethylated C's in CpG context 31866501
Unmethylated C's in CHG context 65426912
Unmethylated C's in CHH context 188650203
Unmethylated C's in Unknown context 2057640
Percentage methylation (CpG context) 26.9%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 3.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4997699 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5239237 original bottom strand