CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150750 243330 38.25 394080 2 143678 274354 34.37 418032 3 134209 248133 35.10 382342 4 139461 203788 40.63 343249 5 137267 179375 43.35 316642 6 142574 149616 48.79 292190 7 159010 145594 52.20 304604 8 73756 171323 30.09 245079 9 65282 157204 29.34 222486 10 65085 151654 30.03 216739 11 67915 155293 30.43 223208 12 66069 156579 29.67 222648 13 65505 159672 29.09 225177 14 63704 162858 28.12 226562 15 62533 164155 27.59 226688 16 58345 163443 26.31 221788 17 55004 159364 25.66 214368 18 56928 163217 25.86 220145 19 56014 164251 25.43 220265 20 56243 165899 25.32 222142 21 56903 168022 25.30 224925 22 55888 165333 25.26 221221 23 55283 164676 25.13 219959 24 54852 165587 24.88 220439 25 53554 164381 24.57 217935 26 54020 162241 24.98 216261 27 54188 168041 24.38 222229 28 55677 167385 24.96 223062 29 54221 167551 24.45 221772 30 53806 166380 24.44 220186 31 54357 163569 24.94 217926 32 53049 160536 24.84 213585 33 53774 163264 24.78 217038 34 54625 161555 25.27 216180 35 53517 163308 24.68 216825 36 52537 166187 24.02 218724 37 51249 160563 24.20 211812 38 50656 159542 24.10 210198 39 52726 163303 24.41 216029 40 52181 159907 24.60 212088 41 51799 160622 24.39 212421 42 53298 164548 24.47 217846 43 52470 163582 24.29 216052 44 51967 162359 24.25 214326 45 52684 161896 24.55 214580 46 52661 163530 24.36 216191 47 51910 160054 24.49 211964 48 52020 160287 24.50 212307 49 53378 161010 24.90 214388 50 51894 163648 24.08 215542 51 52835 162959 24.48 215794 52 52461 166155 24.00 218616 53 50716 159549 24.12 210265 54 50458 158371 24.16 208829 55 50142 156148 24.31 206290 56 50649 154763 24.66 205412 57 51939 158276 24.71 210215 58 52131 158545 24.74 210676 59 52408 157081 25.02 209489 60 52010 158701 24.68 210711 61 52042 155728 25.05 207770 62 50779 155950 24.56 206729 63 49997 153663 24.55 203660 64 49858 153424 24.53 203282 65 49757 151619 24.71 201376 66 50751 153013 24.91 203764 67 49435 148325 25.00 197760 68 48897 149474 24.65 198371 69 48232 147493 24.64 195725 70 47808 147495 24.48 195303 71 46437 144507 24.32 190944 72 46733 143745 24.53 190478 73 45875 141369 24.50 187244 74 45864 140268 24.64 186132 75 44286 140094 24.02 184380 76 44703 138218 24.44 182921 77 44576 136844 24.57 181420 78 44616 139125 24.28 183741 79 44218 135575 24.59 179793 80 43017 134896 24.18 177913 81 42492 133434 24.15 175926 82 41133 131763 23.79 172896 83 42481 132686 24.25 175167 84 42024 131861 24.17 173885 85 41538 128885 24.37 170423 86 40295 127695 23.99 167990 87 39103 126082 23.67 165185 88 39725 125940 23.98 165665 89 38952 123548 23.97 162500 90 38551 124289 23.67 162840 91 37999 121023 23.90 159022 92 37588 121370 23.65 158958 93 37270 120194 23.67 157464 94 37092 118168 23.89 155260 95 36679 116679 23.92 153358 96 36618 117712 23.73 154330 97 35053 113771 23.55 148824 98 33161 107190 23.63 140351 99 26328 83806 23.91 110134 100 34400 105711 24.55 140111 101 32874 109235 23.13 142109 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 206915 319615 39.30 526530 2 117954 312177 27.42 430131 3 46775 300928 13.45 347703 4 26931 294541 8.38 321472 5 18481 269215 6.42 287696 6 16259 253361 6.03 269620 7 13194 323947 3.91 337141 8 6376 355287 1.76 361663 9 5278 338033 1.54 343311 10 5332 321806 1.63 327138 11 5567 323240 1.69 328807 12 5491 322853 1.67 328344 13 5059 310890 1.60 315949 14 4937 311338 1.56 316275 15 5016 321625 1.54 326641 16 4338 320716 1.33 325054 17 4849 317531 1.50 322380 18 4296 316249 1.34 320545 19 3866 317463 1.20 321329 20 4263 334590 1.26 338853 21 4027 337742 1.18 341769 22 4261 331957 1.27 336218 23 4283 337099 1.25 341382 24 4220 342428 1.22 346648 25 4100 329463 1.23 333563 26 5108 331850 1.52 336958 27 4034 338611 1.18 342645 28 4034 336882 1.18 340916 29 4596 340215 1.33 344811 30 3821 342702 1.10 346523 31 3776 335222 1.11 338998 32 3810 340180 1.11 343990 33 3923 339141 1.14 343064 34 3994 335118 1.18 339112 35 4607 336147 1.35 340754 36 4015 338139 1.17 342154 37 4034 327529 1.22 331563 38 4460 334883 1.31 339343 39 4007 332824 1.19 336831 40 4006 332896 1.19 336902 41 3858 333356 1.14 337214 42 3768 334412 1.11 338180 43 3843 328661 1.16 332504 44 3849 334150 1.14 337999 45 3874 334060 1.15 337934 46 3837 328964 1.15 332801 47 4141 332554 1.23 336695 48 3880 339767 1.13 343647 49 3868 331524 1.15 335392 50 4277 331128 1.28 335405 51 4123 334244 1.22 338367 52 4063 331199 1.21 335262 53 4057 329891 1.21 333948 54 4341 335767 1.28 340108 55 4144 330548 1.24 334692 56 4431 334383 1.31 338814 57 4157 333672 1.23 337829 58 4631 330009 1.38 334640 59 4838 332345 1.43 337183 60 4807 333098 1.42 337905 61 4722 327139 1.42 331861 62 4990 327066 1.50 332056 63 4919 324467 1.49 329386 64 4992 320700 1.53 325692 65 5796 320747 1.77 326543 66 4978 314934 1.56 319912 67 5000 307531 1.60 312531 68 5374 310891 1.70 316265 69 4743 310545 1.50 315288 70 4507 302386 1.47 306893 71 4661 303286 1.51 307947 72 4632 302069 1.51 306701 73 4592 298208 1.52 302800 74 4855 296358 1.61 301213 75 4516 296646 1.50 301162 76 4328 287083 1.49 291411 77 5069 288813 1.72 293882 78 4588 284227 1.59 288815 79 4487 276877 1.59 281364 80 4400 276513 1.57 280913 81 4475 273679 1.61 278154 82 4278 268110 1.57 272388 83 4549 273087 1.64 277636 84 4555 272156 1.65 276711 85 4625 267049 1.70 271674 86 4545 266394 1.68 270939 87 4423 269116 1.62 273539 88 4414 261739 1.66 266153 89 4587 259323 1.74 263910 90 4351 259289 1.65 263640 91 4403 254796 1.70 259199 92 4453 255514 1.71 259967 93 4763 251951 1.86 256714 94 4477 246674 1.78 251151 95 4608 245479 1.84 250087 96 4742 244044 1.91 248786 97 4556 223020 2.00 227576 98 4307 207268 2.04 211575 99 2521 133669 1.85 136190 100 3274 135851 2.35 139125 101 6266 224440 2.72 230706 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 251789 404817 38.35 656606 2 140525 440969 24.17 581494 3 81719 506832 13.88 588551 4 75757 534955 12.40 610712 5 74470 644406 10.36 718876 6 62247 712243 8.04 774490 7 50564 915765 5.23 966329 8 40025 1007066 3.82 1047091 9 30168 918878 3.18 949046 10 29592 887338 3.23 916930 11 37539 886561 4.06 924100 12 31702 896219 3.42 927921 13 35035 912573 3.70 947608 14 39501 934753 4.05 974254 15 33021 959826 3.33 992847 16 32115 969244 3.21 1001359 17 38415 976478 3.79 1014893 18 32056 1012204 3.07 1044260 19 32002 1037785 2.99 1069787 20 37836 1068804 3.42 1106640 21 32373 1072761 2.93 1105134 22 34545 1071848 3.12 1106393 23 38302 1071088 3.45 1109390 24 32481 1071065 2.94 1103546 25 34839 1076270 3.14 1111109 26 38577 1088718 3.42 1127295 27 32374 1094306 2.87 1126680 28 33056 1097613 2.92 1130669 29 38198 1095862 3.37 1134060 30 32766 1087344 2.93 1120110 31 33641 1074027 3.04 1107668 32 36499 1074830 3.28 1111329 33 32655 1077767 2.94 1110422 34 36072 1085092 3.22 1121164 35 38391 1074612 3.45 1113003 36 32933 1087017 2.94 1119950 37 31796 1079413 2.86 1111209 38 38112 1083402 3.40 1121514 39 32274 1076599 2.91 1108873 40 32344 1071717 2.93 1104061 41 38042 1079904 3.40 1117946 42 33288 1084911 2.98 1118199 43 35322 1077039 3.18 1112361 44 37020 1085809 3.30 1122829 45 33844 1075263 3.05 1109107 46 33013 1079536 2.97 1112549 47 36848 1078127 3.30 1114975 48 31551 1076345 2.85 1107896 49 32087 1064809 2.93 1096896 50 36169 1064801 3.29 1100970 51 31145 1057663 2.86 1088808 52 33801 1052737 3.11 1086538 53 36721 1045304 3.39 1082025 54 31934 1047176 2.96 1079110 55 32685 1041088 3.04 1073773 56 36656 1040646 3.40 1077302 57 31394 1051156 2.90 1082550 58 32311 1045831 3.00 1078142 59 37099 1045685 3.43 1082784 60 31054 1034270 2.91 1065324 61 33443 1025551 3.16 1058994 62 35716 1012785 3.41 1048501 63 31360 1007079 3.02 1038439 64 33212 999560 3.22 1032772 65 35216 992322 3.43 1027538 66 30477 987438 2.99 1017915 67 30842 978527 3.06 1009369 68 34296 972918 3.41 1007214 69 29898 966470 3.00 996368 70 30124 959167 3.05 989291 71 34128 952992 3.46 987120 72 30041 951398 3.06 981439 73 32389 933209 3.35 965598 74 33675 933308 3.48 966983 75 29450 924285 3.09 953735 76 29514 918584 3.11 948098 77 33873 909899 3.59 943772 78 27875 901686 3.00 929561 79 28831 895232 3.12 924063 80 32516 887708 3.53 920224 81 28846 874339 3.19 903185 82 30306 866437 3.38 896743 83 32517 866507 3.62 899024 84 28749 854797 3.25 883546 85 27826 842926 3.20 870752 86 30990 834259 3.58 865249 87 26938 827859 3.15 854797 88 26665 821513 3.14 848178 89 30827 810290 3.67 841117 90 26398 807222 3.17 833620 91 27188 798845 3.29 826033 92 29606 793479 3.60 823085 93 26126 786998 3.21 813124 94 26346 777075 3.28 803421 95 29680 767515 3.72 797195 96 25135 755428 3.22 780563 97 24811 736299 3.26 761110 98 26697 686860 3.74 713557 99 15164 476092 3.09 491256 100 16911 423488 3.84 440399 101 26835 696425 3.71 723260 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 118116 145658 44.78 263774 2 104123 128327 44.79 232450 3 112592 145924 43.55 258516 4 104635 164503 38.88 269138 5 45493 213626 17.56 259119 6 27418 116693 19.03 144111 7 24109 121967 16.50 146076 8 24979 112665 18.15 137644 9 22024 98927 18.21 120951 10 24760 109410 18.45 134170 11 26330 106994 19.75 133324 12 25356 102840 19.78 128196 13 26177 99894 20.76 126071 14 27562 102885 21.13 130447 15 26671 95725 21.79 122396 16 25451 90146 22.02 115597 17 30448 98950 23.53 129398 18 29458 97258 23.25 126716 19 28050 93818 23.02 121868 20 26277 92029 22.21 118306 21 27430 89681 23.42 117111 22 26698 90242 22.83 116940 23 25861 87451 22.82 113312 24 24094 82451 22.61 106545 25 26476 87408 23.25 113884 26 24540 82261 22.98 106801 27 26479 85069 23.74 111548 28 24537 80568 23.35 105105 29 25213 83545 23.18 108758 30 24470 77837 23.92 102307 31 23301 79691 22.62 102992 32 22305 74198 23.11 96503 33 25289 77041 24.71 102330 34 24342 80244 23.27 104586 35 28342 83913 25.25 112255 36 24052 73620 24.63 97672 37 24663 76146 24.47 100809 38 22288 73215 23.34 95503 39 23136 72554 24.18 95690 40 25040 72754 25.60 97794 41 22038 71746 23.50 93784 42 22561 72578 23.71 95139 43 22053 69472 24.10 91525 44 21072 68410 23.55 89482 45 25079 75362 24.97 100441 46 20543 65643 23.84 86186 47 21041 67120 23.87 88161 48 20517 65765 23.78 86282 49 20255 67750 23.02 88005 50 19221 61732 23.74 80953 51 19223 60285 24.18 79508 52 19518 61559 24.07 81077 53 19550 60202 24.51 79752 54 19088 60398 24.01 79486 55 19027 59131 24.34 78158 56 17593 58610 23.09 76203 57 18181 57837 23.92 76018 58 17565 57128 23.52 74693 59 17237 54576 24.00 71813 60 17577 55340 24.11 72917 61 15404 51849 22.90 67253 62 15886 51040 23.74 66926 63 16699 51240 24.58 67939 64 15871 50196 24.02 66067 65 15563 48078 24.45 63641 66 16499 50390 24.67 66889 67 15312 50426 23.29 65738 68 16277 51671 23.96 67948 69 15049 46390 24.49 61439 70 14576 46520 23.86 61096 71 14979 45151 24.91 60130 72 14024 43404 24.42 57428 73 14215 44729 24.12 58944 74 13031 43132 23.20 56163 75 12946 42458 23.37 55404 76 13478 41842 24.36 55320 77 13167 40808 24.39 53975 78 13135 40983 24.27 54118 79 12425 40631 23.42 53056 80 12310 39798 23.62 52108 81 12227 38504 24.10 50731 82 12413 39622 23.86 52035 83 12539 37976 24.82 50515 84 13325 40521 24.75 53846 85 11940 37554 24.12 49494 86 11537 37312 23.62 48849 87 11538 35865 24.34 47403 88 11545 35934 24.32 47479 89 12050 36609 24.76 48659 90 11978 36107 24.91 48085 91 11238 35019 24.29 46257 92 10761 34778 23.63 45539 93 11318 34916 24.48 46234 94 11186 34838 24.30 46024 95 11002 33936 24.48 44938 96 10899 34391 24.06 45290 97 11438 35598 24.32 47036 98 10600 32636 24.52 43236 99 9185 0 100.00 9185 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 41169 190077 17.80 231246 2 41460 195101 17.53 236561 3 39066 199655 16.36 238721 4 42516 211750 16.72 254266 5 5337 388626 1.35 393963 6 3738 470363 0.79 474101 7 2304 259687 0.88 261991 8 2352 277220 0.84 279572 9 2139 231537 0.92 233676 10 2190 222240 0.98 224430 11 2918 294064 0.98 296982 12 2359 232412 1.00 234771 13 2259 232085 0.96 234344 14 2325 225462 1.02 227787 15 2324 214450 1.07 216774 16 2131 200021 1.05 202152 17 2373 215505 1.09 217878 18 2628 191332 1.35 193960 19 2214 188149 1.16 190363 20 2247 186926 1.19 189173 21 2830 180285 1.55 183115 22 2422 194094 1.23 196516 23 2221 193204 1.14 195425 24 2123 173059 1.21 175182 25 2182 175959 1.22 178141 26 2343 185873 1.24 188216 27 2198 173101 1.25 175299 28 2085 163990 1.26 166075 29 2187 174139 1.24 176326 30 2265 168832 1.32 171097 31 1965 164181 1.18 166146 32 2067 166816 1.22 168883 33 2306 191701 1.19 194007 34 2016 161983 1.23 163999 35 2164 167360 1.28 169524 36 2018 164990 1.21 167008 37 2035 151620 1.32 153655 38 2194 162344 1.33 164538 39 2153 153168 1.39 155321 40 2081 149266 1.37 151347 41 2080 144464 1.42 146544 42 2190 135554 1.59 137744 43 2307 140566 1.61 142873 44 1970 139265 1.39 141235 45 1890 130504 1.43 132394 46 1961 130163 1.48 132124 47 2015 135236 1.47 137251 48 2097 128745 1.60 130842 49 1972 132355 1.47 134327 50 2013 129310 1.53 131323 51 2056 120059 1.68 122115 52 1998 117651 1.67 119649 53 2269 130739 1.71 133008 54 1913 120751 1.56 122664 55 1812 119285 1.50 121097 56 1888 119893 1.55 121781 57 2071 112630 1.81 114701 58 1690 113108 1.47 114798 59 1503 113794 1.30 115297 60 1550 110535 1.38 112085 61 1283 108884 1.16 110167 62 1306 112100 1.15 113406 63 1352 112228 1.19 113580 64 1159 103161 1.11 104320 65 1209 106771 1.12 107980 66 1181 99851 1.17 101032 67 1194 106952 1.10 108146 68 1141 105643 1.07 106784 69 1253 102342 1.21 103595 70 1081 100862 1.06 101943 71 1123 103276 1.08 104399 72 1103 95485 1.14 96588 73 1007 94875 1.05 95882 74 1006 97848 1.02 98854 75 933 93493 0.99 94426 76 1010 89989 1.11 90999 77 1041 95231 1.08 96272 78 1063 89711 1.17 90774 79 1019 88513 1.14 89532 80 983 87989 1.10 88972 81 1009 84111 1.19 85120 82 926 83316 1.10 84242 83 920 85191 1.07 86111 84 902 81477 1.09 82379 85 978 89004 1.09 89982 86 903 81264 1.10 82167 87 960 80582 1.18 81542 88 913 75980 1.19 76893 89 944 82747 1.13 83691 90 1010 79515 1.25 80525 91 955 80957 1.17 81912 92 918 79223 1.15 80141 93 897 75310 1.18 76207 94 919 74222 1.22 75141 95 944 76775 1.21 77719 96 984 73211 1.33 74195 97 931 71551 1.28 72482 98 778 70395 1.09 71173 99 679 0 100.00 679 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72909 277864 20.79 350773 2 61790 231401 21.07 293191 3 62738 229345 21.48 292083 4 62213 220330 22.02 282543 5 19979 435691 4.38 455670 6 18685 585128 3.09 603813 7 19366 781488 2.42 800854 8 18442 768633 2.34 787075 9 21145 721306 2.85 742451 10 18835 744260 2.47 763095 11 19017 730557 2.54 749574 12 17939 677970 2.58 695909 13 17097 704888 2.37 721985 14 17546 707800 2.42 725346 15 17677 723746 2.38 741423 16 15495 687519 2.20 703014 17 17055 689396 2.41 706451 18 16661 685326 2.37 701987 19 15033 640494 2.29 655527 20 16744 669139 2.44 685883 21 16688 636193 2.56 652881 22 15988 617872 2.52 633860 23 16102 606278 2.59 622380 24 15384 579323 2.59 594707 25 16015 577612 2.70 593627 26 15682 570804 2.67 586486 27 16649 610234 2.66 626883 28 15082 582875 2.52 597957 29 15397 573378 2.62 588775 30 16345 556872 2.85 573217 31 15162 545437 2.70 560599 32 15318 529519 2.81 544837 33 16053 519633 3.00 535686 34 15108 518809 2.83 533917 35 15982 532208 2.92 548190 36 14900 527918 2.74 542818 37 14008 520501 2.62 534509 38 15063 540326 2.71 555389 39 15121 497589 2.95 512710 40 14458 516619 2.72 531077 41 14555 490332 2.88 504887 42 14549 497276 2.84 511825 43 14282 473082 2.93 487364 44 13470 470603 2.78 484073 45 14368 467044 2.98 481412 46 12853 471131 2.66 483984 47 13177 463020 2.77 476197 48 13440 449834 2.90 463274 49 12562 453087 2.70 465649 50 12963 446687 2.82 459650 51 12862 436067 2.87 448929 52 12043 414026 2.83 426069 53 11833 412821 2.79 424654 54 11460 400705 2.78 412165 55 11511 412620 2.71 424131 56 11283 403394 2.72 414677 57 11027 410633 2.62 421660 58 10408 398600 2.54 409008 59 10858 382672 2.76 393530 60 10430 391710 2.59 402140 61 10560 373787 2.75 384347 62 10079 373468 2.63 383547 63 9915 373875 2.58 383790 64 9858 362727 2.65 372585 65 9529 365407 2.54 374936 66 9536 352874 2.63 362410 67 9221 354063 2.54 363284 68 9108 363212 2.45 372320 69 9532 351946 2.64 361478 70 8756 342955 2.49 351711 71 9107 337864 2.62 346971 72 9370 333883 2.73 343253 73 8912 328667 2.64 337579 74 8486 329691 2.51 338177 75 8614 327936 2.56 336550 76 8236 316945 2.53 325181 77 8728 314268 2.70 322996 78 8719 317088 2.68 325807 79 8157 319926 2.49 328083 80 8344 308555 2.63 316899 81 8704 308749 2.74 317453 82 8064 303728 2.59 311792 83 8188 300709 2.65 308897 84 8281 300752 2.68 309033 85 7742 293877 2.57 301619 86 7635 292484 2.54 300119 87 7893 287958 2.67 295851 88 7261 281607 2.51 288868 89 7592 279383 2.65 286975 90 7620 279013 2.66 286633 91 7322 274729 2.60 282051 92 7000 271198 2.52 278198 93 7013 268505 2.55 275518 94 6628 264234 2.45 270862 95 6962 260707 2.60 267669 96 6701 258594 2.53 265295 97 6167 257978 2.33 264145 98 5856 247662 2.31 253518 99 4336 0 100.00 4336