Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-214_S30_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-214_S30_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 28660043
Paired-end alignments with a unique best hit 13828654
Pairs without alignments under any condition 12337643
Pairs that did not map uniquely 2493746
Genomic sequence context not extractable (edges of chromosomes) 14

Cytosine Methylation

Total C's analysed 426052941
Methylated C's in CpG context 13963490
Methylated C's in CHG context 2165482
Methylated C's in CHH context 8555313
Methylated C's in Unknown context 307555
Unmethylated C's in CpG context 46626860
Unmethylated C's in CHG context 90587401
Unmethylated C's in CHH context 264154395
Unmethylated C's in Unknown context 2806908
Percentage methylation (CpG context) 23.0%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 3.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6750401 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7078239 original bottom strand