CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113338 161110 41.30 274448 2 109839 182449 37.58 292288 3 105877 169352 38.47 275229 4 111055 142862 43.74 253917 5 107342 123284 46.54 230626 6 112635 103864 52.03 216499 7 124288 101719 54.99 226007 8 57643 119428 32.55 177071 9 50958 109505 31.76 160463 10 50269 106063 32.16 156332 11 52920 109496 32.58 162416 12 51528 111269 31.65 162797 13 51447 114582 30.99 166029 14 49845 116833 29.90 166678 15 49630 118637 29.49 168267 16 45925 117879 28.04 163804 17 43522 115599 27.35 159121 18 44696 117852 27.50 162548 19 43639 118413 26.93 162052 20 44426 120352 26.96 164778 21 43858 120715 26.65 164573 22 43346 119540 26.61 162886 23 43278 118371 26.77 161649 24 42446 119683 26.18 162129 25 41878 118205 26.16 160083 26 42677 117874 26.58 160551 27 42329 120712 25.96 163041 28 43814 120150 26.72 163964 29 42320 120457 26.00 162777 30 41752 120519 25.73 162271 31 42541 117471 26.59 160012 32 41579 115499 26.47 157078 33 41922 117517 26.29 159439 34 42785 116784 26.81 159569 35 42024 116973 26.43 158997 36 41468 119619 25.74 161087 37 40537 115907 25.91 156444 38 39778 114735 25.74 154513 39 41305 116903 26.11 158208 40 40696 114981 26.14 155677 41 40476 114255 26.16 154731 42 41418 117288 26.10 158706 43 40718 116130 25.96 156848 44 40187 114671 25.95 154858 45 40824 114850 26.22 155674 46 41250 115520 26.31 156770 47 40215 113858 26.10 154073 48 39766 114423 25.79 154189 49 41779 114385 26.75 156164 50 39958 115831 25.65 155789 51 39966 114863 25.81 154829 52 40750 117683 25.72 158433 53 39135 113076 25.71 152211 54 39019 112743 25.71 151762 55 39136 110110 26.22 149246 56 39020 109754 26.23 148774 57 39714 112874 26.03 152588 58 40230 112152 26.40 152382 59 40797 110831 26.91 151628 60 40592 112004 26.60 152596 61 40546 109950 26.94 150496 62 39970 109233 26.79 149203 63 38756 108517 26.32 147273 64 38694 107367 26.49 146061 65 38518 106833 26.50 145351 66 38944 106441 26.79 145385 67 38300 103736 26.96 142036 68 37599 103596 26.63 141195 69 37204 102468 26.64 139672 70 36388 101833 26.33 138221 71 35981 99527 26.55 135508 72 35485 99244 26.34 134729 73 35217 97748 26.49 132965 74 34747 96959 26.38 131706 75 33545 96483 25.80 130028 76 33396 95681 25.87 129077 77 34027 93766 26.63 127793 78 33525 95629 25.96 129154 79 32988 93320 26.12 126308 80 32576 92702 26.00 125278 81 31890 92319 25.67 124209 82 31090 89932 25.69 121022 83 31886 90778 25.99 122664 84 31578 89728 26.03 121306 85 30872 87874 26.00 118746 86 29936 86248 25.77 116184 87 29268 86588 25.26 115856 88 29538 86120 25.54 115658 89 28973 83866 25.68 112839 90 28779 84489 25.41 113268 91 28198 82093 25.57 110291 92 27924 82636 25.26 110560 93 27573 81761 25.22 109334 94 27600 80073 25.63 107673 95 26840 79217 25.31 106057 96 27071 80036 25.27 107107 97 26226 77345 25.32 103571 98 24511 71947 25.41 96458 99 19402 56674 25.50 76076 100 25435 71050 26.36 96485 101 24589 73558 25.05 98147 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150946 229104 39.72 380050 2 86780 229063 27.48 315843 3 35980 223520 13.87 259500 4 21248 215564 8.97 236812 5 15148 195185 7.20 210333 6 13089 185417 6.59 198506 7 10615 236496 4.30 247111 8 5144 258474 1.95 263618 9 4311 246877 1.72 251188 10 4319 238848 1.78 243167 11 4633 241595 1.88 246228 12 4341 241353 1.77 245694 13 4272 232725 1.80 236997 14 3980 232696 1.68 236676 15 4044 242066 1.64 246110 16 3380 241767 1.38 245147 17 4030 240041 1.65 244071 18 3463 238353 1.43 241816 19 3248 238279 1.34 241527 20 3515 251639 1.38 255154 21 3345 255122 1.29 258467 22 3630 249297 1.44 252927 23 3641 254044 1.41 257685 24 3496 257329 1.34 260825 25 3429 247149 1.37 250578 26 4520 249120 1.78 253640 27 3452 253299 1.34 256751 28 3351 252624 1.31 255975 29 4006 255249 1.55 259255 30 3212 257756 1.23 260968 31 3162 249626 1.25 252788 32 3265 254793 1.27 258058 33 3452 254628 1.34 258080 34 3430 249104 1.36 252534 35 4173 250417 1.64 254590 36 3433 252032 1.34 255465 37 3337 243798 1.35 247135 38 3918 249323 1.55 253241 39 3384 247941 1.35 251325 40 3355 246712 1.34 250067 41 3220 247637 1.28 250857 42 3371 247430 1.34 250801 43 3227 242963 1.31 246190 44 3126 246132 1.25 249258 45 3065 245952 1.23 249017 46 3206 243058 1.30 246264 47 3506 244990 1.41 248496 48 3124 250307 1.23 253431 49 3256 243532 1.32 246788 50 3424 242832 1.39 246256 51 3261 246357 1.31 249618 52 3310 244554 1.34 247864 53 3374 241340 1.38 244714 54 3540 245743 1.42 249283 55 3507 241580 1.43 245087 56 3629 245531 1.46 249160 57 3514 243399 1.42 246913 58 3683 241213 1.50 244896 59 3991 242569 1.62 246560 60 3816 242797 1.55 246613 61 3942 237337 1.63 241279 62 4071 237757 1.68 241828 63 3952 235452 1.65 239404 64 3998 232092 1.69 236090 65 4774 231586 2.02 236360 66 3997 227032 1.73 231029 67 3950 220813 1.76 224763 68 4401 223429 1.93 227830 69 3760 221951 1.67 225711 70 3673 216848 1.67 220521 71 3728 215774 1.70 219502 72 3658 216545 1.66 220203 73 3671 212676 1.70 216347 74 4057 210610 1.89 214667 75 3512 211403 1.63 214915 76 3515 202850 1.70 206365 77 3871 205418 1.85 209289 78 3530 201539 1.72 205069 79 3431 195861 1.72 199292 80 3522 196510 1.76 200032 81 3411 192526 1.74 195937 82 3255 188335 1.70 191590 83 3508 192348 1.79 195856 84 3527 192347 1.80 195874 85 3514 186821 1.85 190335 86 3456 187432 1.81 190888 87 3407 188965 1.77 192372 88 3242 183109 1.74 186351 89 3593 181662 1.94 185255 90 3190 182104 1.72 185294 91 3313 177111 1.84 180424 92 3539 178094 1.95 181633 93 3684 176397 2.05 180081 94 3375 171414 1.93 174789 95 3528 170689 2.03 174217 96 3515 170167 2.02 173682 97 3459 153710 2.20 157169 98 3209 143477 2.19 146686 99 1991 91947 2.12 93938 100 2474 93151 2.59 95625 101 4734 155096 2.96 159830 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 198725 299835 39.86 498560 2 114453 330737 25.71 445190 3 68810 379292 15.36 448102 4 65044 396412 14.10 461456 5 63798 474559 11.85 538357 6 53308 525649 9.21 578957 7 43055 676814 5.98 719869 8 34104 745111 4.38 779215 9 25955 680544 3.67 706499 10 25553 658738 3.73 684291 11 32625 661928 4.70 694553 12 27492 664337 3.97 691829 13 30374 677299 4.29 707673 14 33669 693863 4.63 727532 15 28325 710373 3.83 738698 16 27810 715914 3.74 743724 17 33256 722334 4.40 755590 18 27246 747674 3.52 774920 19 27363 762576 3.46 789939 20 32453 788681 3.95 821134 21 27706 788403 3.39 816109 22 29831 787297 3.65 817128 23 32779 785163 4.01 817942 24 27644 781331 3.42 808975 25 30090 783186 3.70 813276 26 33017 789365 4.01 822382 27 27934 795726 3.39 823660 28 28044 799182 3.39 827226 29 33221 795090 4.01 828311 30 27974 787122 3.43 815096 31 28892 777494 3.58 806386 32 31403 777149 3.88 808552 33 27862 780643 3.45 808505 34 31307 783715 3.84 815022 35 32895 776027 4.07 808922 36 28056 782326 3.46 810382 37 27491 775780 3.42 803271 38 32941 779407 4.06 812348 39 26968 773023 3.37 799991 40 27716 769712 3.48 797428 41 32151 774367 3.99 806518 42 28185 778708 3.49 806893 43 29974 770096 3.75 800070 44 31630 778059 3.91 809689 45 28860 767382 3.62 796242 46 28016 771503 3.50 799519 47 31060 769344 3.88 800404 48 26456 768455 3.33 794911 49 26929 759014 3.43 785943 50 30502 760271 3.86 790773 51 26402 751376 3.39 777778 52 28225 747299 3.64 775524 53 30618 739622 3.98 770240 54 26848 741186 3.50 768034 55 27813 737352 3.63 765165 56 30774 734028 4.02 764802 57 26290 741261 3.43 767551 58 26810 735883 3.52 762693 59 30720 733310 4.02 764030 60 25856 724260 3.45 750116 61 27992 717468 3.75 745460 62 29674 708004 4.02 737678 63 25875 701704 3.56 727579 64 27629 694747 3.82 722376 65 29002 687923 4.05 716925 66 24952 683055 3.52 708007 67 25336 678128 3.60 703464 68 28277 670594 4.05 698871 69 24364 665699 3.53 690063 70 24969 658771 3.65 683740 71 28039 657003 4.09 685042 72 24424 653793 3.60 678217 73 26962 641350 4.03 668312 74 27455 638238 4.12 665693 75 24183 633576 3.68 657759 76 23862 627529 3.66 651391 77 27579 619505 4.26 647084 78 22760 613790 3.58 636550 79 23260 608244 3.68 631504 80 26310 603958 4.17 630268 81 23340 593630 3.78 616970 82 24410 586437 4.00 610847 83 26575 586411 4.34 612986 84 23488 578552 3.90 602040 85 22423 569860 3.79 592283 86 25024 562182 4.26 587206 87 21809 557962 3.76 579771 88 21107 552849 3.68 573956 89 24829 545790 4.35 570619 90 21134 543185 3.75 564319 91 22041 536489 3.95 558530 92 23869 532672 4.29 556541 93 20948 526983 3.82 547931 94 20942 520279 3.87 541221 95 23835 513694 4.43 537529 96 20105 503680 3.84 523785 97 20053 491113 3.92 511166 98 21479 457911 4.48 479390 99 12062 317626 3.66 329688 100 13848 283257 4.66 297105 101 21376 464347 4.40 485723 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 93067 105368 46.90 198435 2 80822 89836 47.36 170658 3 86368 103087 45.59 189455 4 78454 113045 40.97 191499 5 34555 147258 19.01 181813 6 21355 80876 20.89 102231 7 18480 84895 17.88 103375 8 19152 78308 19.65 97460 9 16830 67924 19.86 84754 10 18400 75711 19.55 94111 11 19465 74158 20.79 93623 12 19353 72060 21.17 91413 13 19658 69837 21.97 89495 14 20689 72177 22.28 92866 15 19966 66213 23.17 86179 16 18649 62168 23.08 80817 17 23090 68175 25.30 91265 18 22096 67137 24.76 89233 19 21351 66248 24.37 87599 20 19717 64393 23.44 84110 21 20454 62380 24.69 82834 22 20139 63407 24.11 83546 23 19450 60008 24.48 79458 24 17880 56577 24.01 74457 25 19928 60007 24.93 79935 26 18513 56314 24.74 74827 27 19984 58246 25.55 78230 28 18159 54454 25.01 72613 29 19086 56918 25.11 76004 30 18243 53178 25.54 71421 31 17726 54606 24.51 72332 32 16628 51295 24.48 67923 33 18997 53047 26.37 72044 34 18289 54810 25.02 73099 35 21975 58032 27.47 80007 36 17725 50257 26.07 67982 37 18622 52332 26.25 70954 38 16757 49949 25.12 66706 39 17183 49575 25.74 66758 40 18795 49494 27.52 68289 41 16246 49313 24.78 65559 42 16703 49827 25.11 66530 43 16361 46926 25.85 63287 44 15540 46317 25.12 61857 45 18889 51476 26.84 70365 46 14899 43240 25.63 58139 47 15145 45261 25.07 60406 48 15370 44077 25.85 59447 49 14458 46513 23.71 60971 50 13799 41261 25.06 55060 51 14213 39981 26.23 54194 52 13939 41768 25.02 55707 53 14030 40435 25.76 54465 54 13718 40275 25.41 53993 55 13689 39023 25.97 52712 56 12657 38861 24.57 51518 57 12950 38608 25.12 51558 58 12761 37985 25.15 50746 59 12222 35612 25.55 47834 60 12301 36611 25.15 48912 61 10784 34344 23.90 45128 62 11165 33138 25.20 44303 63 11973 33292 26.45 45265 64 11421 33040 25.69 44461 65 10973 31443 25.87 42416 66 11591 32885 26.06 44476 67 10712 33536 24.21 44248 68 11771 34605 25.38 46376 69 10645 30134 26.10 40779 70 10267 30693 25.07 40960 71 10559 29168 26.58 39727 72 9929 28572 25.79 38501 73 9944 28770 25.69 38714 74 9278 28661 24.46 37939 75 9094 28127 24.43 37221 76 9453 26920 25.99 36373 77 9282 26797 25.73 36079 78 9298 26801 25.76 36099 79 8867 26401 25.14 35268 80 8715 25795 25.25 34510 81 8640 25316 25.44 33956 82 8724 25780 25.28 34504 83 8599 24948 25.63 33547 84 9544 26681 26.35 36225 85 8239 24489 25.17 32728 86 8179 24325 25.16 32504 87 8193 23501 25.85 31694 88 8046 23314 25.66 31360 89 8538 24064 26.19 32602 90 8325 24023 25.74 32348 91 7780 23616 24.78 31396 92 7728 22690 25.41 30418 93 7753 22571 25.57 30324 94 8011 22473 26.28 30484 95 7775 22233 25.91 30008 96 7554 22127 25.45 29681 97 8206 23462 25.91 31668 98 7343 21128 25.79 28471 99 6485 0 100.00 6485 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30489 135469 18.37 165958 2 29395 135689 17.81 165084 3 27654 140644 16.43 168298 4 29686 151682 16.37 181368 5 4264 274824 1.53 279088 6 2902 335020 0.86 337922 7 1800 187351 0.95 189151 8 1927 202709 0.94 204636 9 1761 164968 1.06 166729 10 1762 157211 1.11 158973 11 2535 217786 1.15 220321 12 1960 168206 1.15 170166 13 1743 168472 1.02 170215 14 1789 160837 1.10 162626 15 1831 156452 1.16 158283 16 1687 143923 1.16 145610 17 1912 156506 1.21 158418 18 2326 136928 1.67 139254 19 1985 135709 1.44 137694 20 2060 135610 1.50 137670 21 2573 127914 1.97 130487 22 2198 140206 1.54 142404 23 2145 139455 1.51 141600 24 1840 123529 1.47 125369 25 2007 125294 1.58 127301 26 2088 132792 1.55 134880 27 1965 122427 1.58 124392 28 1919 118231 1.60 120150 29 2065 125260 1.62 127325 30 1960 120228 1.60 122188 31 1868 116856 1.57 118724 32 1927 117650 1.61 119577 33 2239 139751 1.58 141990 34 1813 114253 1.56 116066 35 1970 119685 1.62 121655 36 1873 117256 1.57 119129 37 1697 107334 1.56 109031 38 1918 116745 1.62 118663 39 1959 107967 1.78 109926 40 1854 105475 1.73 107329 41 1875 100885 1.82 102760 42 1871 93752 1.96 95623 43 1964 99518 1.94 101482 44 1733 96179 1.77 97912 45 1714 89475 1.88 91189 46 1703 90233 1.85 91936 47 1886 93372 1.98 95258 48 1743 88010 1.94 89753 49 1729 92079 1.84 93808 50 1781 89050 1.96 90831 51 1664 81821 1.99 83485 52 1616 79804 1.98 81420 53 1818 89642 1.99 91460 54 1594 82334 1.90 83928 55 1596 81414 1.92 83010 56 1423 80991 1.73 82414 57 1732 76102 2.23 77834 58 1358 76069 1.75 77427 59 1225 77293 1.56 78518 60 1284 74357 1.70 75641 61 1034 73858 1.38 74892 62 1042 76193 1.35 77235 63 968 75841 1.26 76809 64 860 68356 1.24 69216 65 966 72189 1.32 73155 66 906 66593 1.34 67499 67 915 72955 1.24 73870 68 861 70964 1.20 71825 69 836 69052 1.20 69888 70 854 67694 1.25 68548 71 839 70683 1.17 71522 72 816 64366 1.25 65182 73 754 63356 1.18 64110 74 702 66225 1.05 66927 75 736 62384 1.17 63120 76 709 60717 1.15 61426 77 805 64525 1.23 65330 78 722 60664 1.18 61386 79 677 59900 1.12 60577 80 709 58894 1.19 59603 81 720 56471 1.26 57191 82 736 56403 1.29 57139 83 717 57898 1.22 58615 84 683 54472 1.24 55155 85 714 61186 1.15 61900 86 714 54689 1.29 55403 87 727 54645 1.31 55372 88 660 50907 1.28 51567 89 706 55618 1.25 56324 90 787 53813 1.44 54600 91 708 55449 1.26 56157 92 720 53903 1.32 54623 93 639 50752 1.24 51391 94 644 49213 1.29 49857 95 690 51954 1.31 52644 96 773 49054 1.55 49827 97 660 47813 1.36 48473 98 591 47759 1.22 48350 99 560 0 100.00 560 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53799 188706 22.18 242505 2 46287 156325 22.85 202612 3 47046 156564 23.11 203610 4 46945 153229 23.45 200174 5 17414 306801 5.37 324215 6 16318 411082 3.82 427400 7 16464 547070 2.92 563534 8 15861 537419 2.87 553280 9 18299 502998 3.51 521297 10 15971 520527 2.98 536498 11 16098 511991 3.05 528089 12 15231 473174 3.12 488405 13 14833 494466 2.91 509299 14 14926 497434 2.91 512360 15 15021 512603 2.85 527624 16 13399 488363 2.67 501762 17 14688 491028 2.90 505716 18 14130 486809 2.82 500939 19 13059 450847 2.82 463906 20 14606 474121 2.99 488727 21 14635 447282 3.17 461917 22 14256 431396 3.20 445652 23 14352 422142 3.29 436494 24 13182 401952 3.18 415134 25 14064 399198 3.40 413262 26 13524 396089 3.30 409613 27 14507 424955 3.30 439462 28 13130 403158 3.15 416288 29 13453 397539 3.27 410992 30 14183 382406 3.58 396589 31 13187 370659 3.44 383846 32 13168 357927 3.55 371095 33 13827 353289 3.77 367116 34 13226 352949 3.61 366175 35 14137 362798 3.75 376935 36 12720 358508 3.43 371228 37 12293 353726 3.36 366019 38 13155 369460 3.44 382615 39 13014 335488 3.73 348502 40 12535 351424 3.44 363959 41 12589 327882 3.70 340471 42 12449 334483 3.59 346932 43 12337 315611 3.76 327948 44 11683 312322 3.61 324005 45 12147 311427 3.75 323574 46 11135 312894 3.44 324029 47 11060 305806 3.49 316866 48 11318 295394 3.69 306712 49 10598 299945 3.41 310543 50 10697 294110 3.51 304807 51 10965 285380 3.70 296345 52 10268 269673 3.67 279941 53 9770 269576 3.50 279346 54 9562 260542 3.54 270104 55 9434 271243 3.36 280677 56 9305 262581 3.42 271886 57 9213 267397 3.33 276610 58 8587 259556 3.20 268143 59 8745 247386 3.41 256131 60 8391 254295 3.19 262686 61 8469 241743 3.38 250212 62 7896 241281 3.17 249177 63 7919 242574 3.16 250493 64 8002 234876 3.29 242878 65 7645 238278 3.11 245923 66 7842 228268 3.32 236110 67 7243 229971 3.05 237214 68 7413 237654 3.02 245067 69 7578 230439 3.18 238017 70 7011 223288 3.04 230299 71 7179 218859 3.18 226038 72 7424 217228 3.30 224652 73 6991 211795 3.20 218786 74 6902 213244 3.14 220146 75 7030 212889 3.20 219919 76 6529 204752 3.09 211281 77 6934 203273 3.30 210207 78 6981 205786 3.28 212767 79 6635 207961 3.09 214596 80 6658 200407 3.22 207065 81 6991 201207 3.36 208198 82 6605 197908 3.23 204513 83 6594 196102 3.25 202696 84 6514 195973 3.22 202487 85 6095 192215 3.07 198310 86 6271 189305 3.21 195576 87 6303 186815 3.26 193118 88 5790 181628 3.09 187418 89 6024 180536 3.23 186560 90 6180 180344 3.31 186524 91 5852 177628 3.19 183480 92 5673 175996 3.12 181669 93 5638 174081 3.14 179719 94 5277 171718 2.98 176995 95 5623 168776 3.22 174399 96 5263 166833 3.06 172096 97 5078 166692 2.96 171770 98 4658 159681 2.83 164339 99 3370 0 100.00 3370