Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-206_S27_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-206_S27_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 20931018
Paired-end alignments with a unique best hit 9918260
Pairs without alignments under any condition 9026731
Pairs that did not map uniquely 1986027
Genomic sequence context not extractable (edges of chromosomes) 21

Cytosine Methylation

Total C's analysed 296793855
Methylated C's in CpG context 10485331
Methylated C's in CHG context 1669822
Methylated C's in CHH context 6970670
Methylated C's in Unknown context 260875
Unmethylated C's in CpG context 32893020
Unmethylated C's in CHG context 64524289
Unmethylated C's in CHH context 180250723
Unmethylated C's in Unknown context 1999481
Percentage methylation (CpG context) 24.2%
Percentage methylation (CHG context) 2.5%
Percentage methylation (CHH context) 3.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4828301 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5089938 original bottom strand