EPI-205_S26_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5150110 lines in total Total number of methylation call strings processed: 10300220 Final Cytosine Methylation Report ================================= Total number of C's analysed: 103331667 Total methylated C's in CpG context: 4086624 Total methylated C's in CHG context: 624807 Total methylated C's in CHH context: 2760965 Total C to T conversions in CpG context: 10383710 Total C to T conversions in CHG context: 21368446 Total C to T conversions in CHH context: 64107115 C methylated in CpG context: 28.2% C methylated in CHG context: 2.8% C methylated in CHH context: 4.1%