CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 76674 115307 39.94 191981 2 74663 131861 36.15 206524 3 71562 119847 37.39 191409 4 74746 98273 43.20 173019 5 74022 84945 46.56 158967 6 76271 71050 51.77 147321 7 85883 70410 54.95 156293 8 39839 81685 32.78 121524 9 35200 74303 32.15 109503 10 34495 73128 32.05 107623 11 36515 75026 32.74 111541 12 35153 76655 31.44 111808 13 35035 79479 30.59 114514 14 34145 80300 29.84 114445 15 33603 81438 29.21 115041 16 30864 80366 27.75 111230 17 29917 78904 27.49 108821 18 31017 81382 27.60 112399 19 29799 81569 26.76 111368 20 30795 82551 27.17 113346 21 30204 83432 26.58 113636 22 29872 82762 26.52 112634 23 29468 81225 26.62 110693 24 29581 81455 26.64 111036 25 28879 81564 26.15 110443 26 29559 80711 26.81 110270 27 29096 82507 26.07 111603 28 29965 82682 26.60 112647 29 29036 83398 25.82 112434 30 28115 82904 25.32 111019 31 28947 80552 26.44 109499 32 28101 79391 26.14 107492 33 28634 79641 26.45 108275 34 29486 79617 27.03 109103 35 28693 80683 26.23 109376 36 28155 81949 25.57 110104 37 27564 79314 25.79 106878 38 26874 78201 25.58 105075 39 28224 80157 26.04 108381 40 28056 78276 26.39 106332 41 27760 77997 26.25 105757 42 28543 80603 26.15 109146 43 27743 79198 25.94 106941 44 27233 78521 25.75 105754 45 27677 78049 26.18 105726 46 27702 79272 25.90 106974 47 27556 77502 26.23 105058 48 26836 78293 25.53 105129 49 27971 78015 26.39 105986 50 27449 78573 25.89 106022 51 27052 78817 25.55 105869 52 27535 80522 25.48 108057 53 26693 77004 25.74 103697 54 26188 76512 25.50 102700 55 26312 75446 25.86 101758 56 26406 75052 26.03 101458 57 27147 76186 26.27 103333 58 27455 76208 26.48 103663 59 27593 75231 26.84 102824 60 27369 76278 26.41 103647 61 27354 74697 26.80 102051 62 26854 74835 26.41 101689 63 26231 73181 26.39 99412 64 26015 72704 26.35 98719 65 26251 71256 26.92 97507 66 26523 71845 26.96 98368 67 25727 70031 26.87 95758 68 25353 69635 26.69 94988 69 24836 68831 26.52 93667 70 25078 68091 26.92 93169 71 23915 67016 26.30 90931 72 23769 66004 26.48 89773 73 23267 65078 26.34 88345 74 23051 63972 26.49 87023 75 22554 64590 25.88 87144 76 22423 63921 25.97 86344 77 22634 62924 26.45 85558 78 22646 63108 26.41 85754 79 21854 61550 26.20 83404 80 21614 61339 26.06 82953 81 21103 60499 25.86 81602 82 20572 59519 25.69 80091 83 20994 59961 25.93 80955 84 20699 59629 25.77 80328 85 20203 58225 25.76 78428 86 19865 56850 25.89 76715 87 19255 56729 25.34 75984 88 19629 56162 25.90 75791 89 19000 55157 25.62 74157 90 19098 54935 25.80 74033 91 18482 54033 25.49 72515 92 18434 53598 25.59 72032 93 18369 53446 25.58 71815 94 17992 52442 25.54 70434 95 17858 52121 25.52 69979 96 17997 52533 25.52 70530 97 17187 50471 25.40 67658 98 16223 47405 25.50 63628 99 12791 36911 25.74 49702 100 16530 46648 26.16 63178 101 15749 47271 24.99 63020 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 101587 158831 39.01 260418 2 58130 155416 27.22 213546 3 25167 151732 14.23 176899 4 14525 146049 9.05 160574 5 10466 133120 7.29 143586 6 9345 126876 6.86 136221 7 7264 158220 4.39 165484 8 3438 174059 1.94 177497 9 2799 167324 1.65 170123 10 3027 161013 1.85 164040 11 3106 161799 1.88 164905 12 2987 163534 1.79 166521 13 2807 156631 1.76 159438 14 2574 157095 1.61 159669 15 2658 163578 1.60 166236 16 2347 163893 1.41 166240 17 2680 160962 1.64 163642 18 2376 160577 1.46 162953 19 2123 160537 1.31 162660 20 2397 169924 1.39 172321 21 2322 171440 1.34 173762 22 2510 167833 1.47 170343 23 2355 169395 1.37 171750 24 2412 173138 1.37 175550 25 2383 166673 1.41 169056 26 2927 167532 1.72 170459 27 2357 170985 1.36 173342 28 2264 170584 1.31 172848 29 2610 172044 1.49 174654 30 2167 173896 1.23 176063 31 2222 168294 1.30 170516 32 2231 171007 1.29 173238 33 2309 170348 1.34 172657 34 2448 168018 1.44 170466 35 2819 167510 1.66 170329 36 2337 169893 1.36 172230 37 2261 162516 1.37 164777 38 2606 167131 1.54 169737 39 2256 165906 1.34 168162 40 2296 165353 1.37 167649 41 2259 164886 1.35 167145 42 2246 165738 1.34 167984 43 2132 162340 1.30 164472 44 2236 164687 1.34 166923 45 2158 164548 1.29 166706 46 2134 162766 1.29 164900 47 2361 163303 1.43 165664 48 2135 167879 1.26 170014 49 2145 162401 1.30 164546 50 2291 162670 1.39 164961 51 2295 164593 1.38 166888 52 2227 163820 1.34 166047 53 2248 160578 1.38 162826 54 2329 164750 1.39 167079 55 2322 160421 1.43 162743 56 2396 164331 1.44 166727 57 2504 162718 1.52 165222 58 2545 159762 1.57 162307 59 2693 161131 1.64 163824 60 2544 161756 1.55 164300 61 2700 158157 1.68 160857 62 2797 157848 1.74 160645 63 2727 156239 1.72 158966 64 2785 154887 1.77 157672 65 3124 153896 1.99 157020 66 2658 149837 1.74 152495 67 2721 145892 1.83 148613 68 2952 147042 1.97 149994 69 2479 146348 1.67 148827 70 2485 141716 1.72 144201 71 2506 142368 1.73 144874 72 2490 141844 1.73 144334 73 2458 139776 1.73 142234 74 2607 138023 1.85 140630 75 2407 137619 1.72 140026 76 2362 133007 1.74 135369 77 2710 133795 1.99 136505 78 2412 130513 1.81 132925 79 2345 128160 1.80 130505 80 2323 127224 1.79 129547 81 2271 125815 1.77 128086 82 2192 123216 1.75 125408 83 2370 125372 1.86 127742 84 2305 124780 1.81 127085 85 2339 121342 1.89 123681 86 2353 121675 1.90 124028 87 2156 122452 1.73 124608 88 2142 119149 1.77 121291 89 2253 116550 1.90 118803 90 2174 116062 1.84 118236 91 2159 114123 1.86 116282 92 2299 115324 1.95 117623 93 2392 113165 2.07 115557 94 2392 110353 2.12 112745 95 2285 109840 2.04 112125 96 2310 108205 2.09 110515 97 2240 98816 2.22 101056 98 2130 91093 2.28 93223 99 1270 58730 2.12 60000 100 1584 59443 2.60 61027 101 3013 99209 2.95 102222 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 130455 214590 37.81 345045 2 75806 231277 24.69 307083 3 46030 264735 14.81 310765 4 42688 274899 13.44 317587 5 42303 329412 11.38 371715 6 34997 361009 8.84 396006 7 28474 460244 5.83 488718 8 21808 506442 4.13 528250 9 16883 465927 3.50 482810 10 16665 449792 3.57 466457 11 21025 451680 4.45 472705 12 17835 454516 3.78 472351 13 19705 463362 4.08 483067 14 21682 474517 4.37 496199 15 18692 485976 3.70 504668 16 18240 488134 3.60 506374 17 21320 491391 4.16 512711 18 17921 508496 3.40 526417 19 18417 518648 3.43 537065 20 21123 536541 3.79 557664 21 18290 535536 3.30 553826 22 19650 534169 3.55 553819 23 21405 532880 3.86 554285 24 18029 529980 3.29 548009 25 19671 532294 3.56 551965 26 21527 535903 3.86 557430 27 18368 538401 3.30 556769 28 18272 540001 3.27 558273 29 21663 537950 3.87 559613 30 18118 534810 3.28 552928 31 18984 525692 3.49 544676 32 20144 526124 3.69 546268 33 18076 526643 3.32 544719 34 20314 530351 3.69 550665 35 20990 524071 3.85 545061 36 18299 528519 3.35 546818 37 17655 525309 3.25 542964 38 21002 526185 3.84 547187 39 17953 523543 3.32 541496 40 17892 522221 3.31 540113 41 20558 523921 3.78 544479 42 18116 528231 3.32 546347 43 19366 520072 3.59 539438 44 20010 525340 3.67 545350 45 18465 518697 3.44 537162 46 18009 519851 3.35 537860 47 19998 517959 3.72 537957 48 16854 517671 3.15 534525 49 17261 511565 3.26 528826 50 19313 510889 3.64 530202 51 16902 505185 3.24 522087 52 17997 502245 3.46 520242 53 19129 498988 3.69 518117 54 17234 498134 3.34 515368 55 17703 495870 3.45 513573 56 19339 494206 3.77 513545 57 16570 497835 3.22 514405 58 17049 494145 3.34 511194 59 19529 492001 3.82 511530 60 16492 484757 3.29 501249 61 17713 479637 3.56 497350 62 18547 472798 3.77 491345 63 16564 467645 3.42 484209 64 17480 462404 3.64 479884 65 17938 458860 3.76 476798 66 15745 452661 3.36 468406 67 15989 447441 3.45 463430 68 17518 444838 3.79 462356 69 15389 440923 3.37 456312 70 15383 436440 3.40 451823 71 17227 433485 3.82 450712 72 15213 430021 3.42 445234 73 16489 422316 3.76 438805 74 16889 419774 3.87 436663 75 14829 415133 3.45 429962 76 14820 412845 3.47 427665 77 16946 405852 4.01 422798 78 13955 403719 3.34 417674 79 14469 398711 3.50 413180 80 16166 394796 3.93 410962 81 14570 387988 3.62 402558 82 15247 383531 3.82 398778 83 16490 383164 4.13 399654 84 14423 377852 3.68 392275 85 13982 372328 3.62 386310 86 15288 367751 3.99 383039 87 13545 364625 3.58 378170 88 13095 359750 3.51 372845 89 15402 355057 4.16 370459 90 13198 352946 3.60 366144 91 13472 348392 3.72 361864 92 14532 344931 4.04 359463 93 13120 341425 3.70 354545 94 12976 337984 3.70 350960 95 14536 331971 4.20 346507 96 12350 326350 3.65 338700 97 12386 316315 3.77 328701 98 13076 294772 4.25 307848 99 7644 204751 3.60 212395 100 8509 181262 4.48 189771 101 12891 297731 4.15 310622 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 64995 72671 47.21 137666 2 55287 60977 47.55 116264 3 59295 69246 46.13 128541 4 52973 75660 41.18 128633 5 23555 96910 19.55 120465 6 14605 53994 21.29 68599 7 12285 56879 17.76 69164 8 12993 52265 19.91 65258 9 10778 45000 19.32 55778 10 12540 50235 19.98 62775 11 13169 49604 20.98 62773 12 12948 48232 21.16 61180 13 13033 45879 22.12 58912 14 13588 47992 22.07 61580 15 13367 43694 23.43 57061 16 12662 41533 23.36 54195 17 15676 45693 25.54 61369 18 14570 44958 24.48 59528 19 13968 43438 24.33 57406 20 13247 42963 23.57 56210 21 13464 41136 24.66 54600 22 13465 41574 24.46 55039 23 12395 39825 23.74 52220 24 11650 37108 23.89 48758 25 13242 40334 24.72 53576 26 12386 37080 25.04 49466 27 13367 38893 25.58 52260 28 11977 35578 25.19 47555 29 12893 37524 25.57 50417 30 11768 35142 25.09 46910 31 11577 35040 24.83 46617 32 11011 33318 24.84 44329 33 12451 34748 26.38 47199 34 11923 36028 24.86 47951 35 14627 38686 27.44 53313 36 11612 32471 26.34 44083 37 12042 34330 25.97 46372 38 11058 32726 25.26 43784 39 11298 31800 26.21 43098 40 12072 32202 27.27 44274 41 10745 31944 25.17 42689 42 10810 32833 24.77 43643 43 10562 29967 26.06 40529 44 10125 29480 25.56 39605 45 12186 33513 26.67 45699 46 9640 27670 25.84 37310 47 9740 29039 25.12 38779 48 9951 28457 25.91 38408 49 9425 30198 23.79 39623 50 8924 26640 25.09 35564 51 9013 25860 25.85 34873 52 9017 26415 25.45 35432 53 9372 25546 26.84 34918 54 8971 26118 25.57 35089 55 9084 25033 26.63 34117 56 7967 25219 24.01 33186 57 8299 24424 25.36 32723 58 8176 24360 25.13 32536 59 7663 22895 25.08 30558 60 7834 23592 24.93 31426 61 6961 21892 24.13 28853 62 7037 20634 25.43 27671 63 7654 21038 26.68 28692 64 7189 21012 25.49 28201 65 7107 19695 26.52 26802 66 7560 20868 26.59 28428 67 6781 21322 24.13 28103 68 7641 21947 25.82 29588 69 6776 19406 25.88 26182 70 6454 18943 25.41 25397 71 6624 18314 26.56 24938 72 6462 17649 26.80 24111 73 6295 18319 25.57 24614 74 5754 18191 24.03 23945 75 5731 17651 24.51 23382 76 5975 17209 25.77 23184 77 5805 16911 25.55 22716 78 5853 16856 25.77 22709 79 5677 16326 25.80 22003 80 5489 16363 25.12 21852 81 5506 16271 25.28 21777 82 5662 16308 25.77 21970 83 5645 15473 26.73 21118 84 6048 17284 25.92 23332 85 5234 15460 25.29 20694 86 5202 15318 25.35 20520 87 5155 14977 25.61 20132 88 5045 14611 25.67 19656 89 5484 15147 26.58 20631 90 5381 15064 26.32 20445 91 4837 14542 24.96 19379 92 4856 14647 24.90 19503 93 4927 14096 25.90 19023 94 5107 14255 26.38 19362 95 4880 13798 26.13 18678 96 4668 13877 25.17 18545 97 5134 14767 25.80 19901 98 4660 13368 25.85 18028 99 4146 0 100.00 4146 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21178 91320 18.83 112498 2 19175 88095 17.88 107270 3 18001 92086 16.35 110087 4 19640 99009 16.55 118649 5 2934 180696 1.60 183630 6 2100 219721 0.95 221821 7 1310 123735 1.05 125045 8 1241 133513 0.92 134754 9 1085 107485 1.00 108570 10 1116 103323 1.07 104439 11 1701 148453 1.13 150154 12 1152 111003 1.03 112155 13 1131 110710 1.01 111841 14 1180 105767 1.10 106947 15 1223 102587 1.18 103810 16 1094 93390 1.16 94484 17 1301 103133 1.25 104434 18 1520 89924 1.66 91444 19 1383 88459 1.54 89842 20 1585 87563 1.78 89148 21 1764 83584 2.07 85348 22 1520 92767 1.61 94287 23 1460 91678 1.57 93138 24 1305 80078 1.60 81383 25 1341 81730 1.61 83071 26 1473 87104 1.66 88577 27 1374 80784 1.67 82158 28 1227 76229 1.58 77456 29 1362 81841 1.64 83203 30 1418 78066 1.78 79484 31 1323 76265 1.71 77588 32 1248 75743 1.62 76991 33 1518 92917 1.61 94435 34 1248 74418 1.65 75666 35 1377 78030 1.73 79407 36 1241 76464 1.60 77705 37 1177 68821 1.68 69998 38 1390 75815 1.80 77205 39 1282 70469 1.79 71751 40 1239 67842 1.79 69081 41 1216 64587 1.85 65803 42 1387 60273 2.25 61660 43 1449 63231 2.24 64680 44 1228 61483 1.96 62711 45 1173 56930 2.02 58103 46 1128 56545 1.96 57673 47 1317 59433 2.17 60750 48 1158 55602 2.04 56760 49 1214 58661 2.03 59875 50 1188 56370 2.06 57558 51 1105 51564 2.10 52669 52 1106 50316 2.15 51422 53 1361 56782 2.34 58143 54 1031 52028 1.94 53059 55 1049 51696 1.99 52745 56 945 50385 1.84 51330 57 1175 48374 2.37 49549 58 905 48542 1.83 49447 59 804 48277 1.64 49081 60 787 46970 1.65 47757 61 651 46844 1.37 47495 62 604 48410 1.23 49014 63 631 47961 1.30 48592 64 541 42861 1.25 43402 65 625 45693 1.35 46318 66 524 41742 1.24 42266 67 609 45707 1.31 46316 68 528 45128 1.16 45656 69 606 42787 1.40 43393 70 534 42726 1.23 43260 71 514 43940 1.16 44454 72 486 40242 1.19 40728 73 493 39577 1.23 40070 74 470 41276 1.13 41746 75 446 39204 1.12 39650 76 465 38396 1.20 38861 77 495 40078 1.22 40573 78 510 37737 1.33 38247 79 473 37354 1.25 37827 80 429 36459 1.16 36888 81 537 35747 1.48 36284 82 432 35083 1.22 35515 83 476 36068 1.30 36544 84 430 34118 1.24 34548 85 454 38572 1.16 39026 86 460 33723 1.35 34183 87 457 33924 1.33 34381 88 423 31533 1.32 31956 89 469 34938 1.32 35407 90 458 33568 1.35 34026 91 424 34714 1.21 35138 92 475 33344 1.40 33819 93 436 31756 1.35 32192 94 386 31140 1.22 31526 95 435 32130 1.34 32565 96 490 30733 1.57 31223 97 395 29668 1.31 30063 98 367 30250 1.20 30617 99 334 0 100.00 334 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35291 124207 22.13 159498 2 29813 101174 22.76 130987 3 30660 102521 23.02 133181 4 31210 99656 23.85 130866 5 11283 204591 5.23 215874 6 10867 272680 3.83 283547 7 10818 361160 2.91 371978 8 10244 353576 2.82 363820 9 12058 330600 3.52 342658 10 10524 343381 2.97 353905 11 10370 338219 2.97 348589 12 9994 312634 3.10 322628 13 9633 326916 2.86 336549 14 9737 330183 2.86 339920 15 9875 339605 2.83 349480 16 8681 324035 2.61 332716 17 9687 325561 2.89 335248 18 9123 322694 2.75 331817 19 8364 296525 2.74 304889 20 9861 314950 3.04 324811 21 9541 295933 3.12 305474 22 9284 284965 3.16 294249 23 9141 277843 3.19 286984 24 8750 265400 3.19 274150 25 9110 263047 3.35 272157 26 8894 259154 3.32 268048 27 9569 281919 3.28 291488 28 8501 265709 3.10 274210 29 8891 260755 3.30 269646 30 9210 249051 3.57 258261 31 8665 241322 3.47 249987 32 8603 232712 3.57 241315 33 8870 229938 3.71 238808 34 8533 231680 3.55 240213 35 9191 237665 3.72 246856 36 8424 235685 3.45 244109 37 8012 230591 3.36 238603 38 8568 243272 3.40 251840 39 8324 217647 3.68 225971 40 7973 229241 3.36 237214 41 7993 213587 3.61 221580 42 8152 218380 3.60 226532 43 7889 203889 3.73 211778 44 7505 202645 3.57 210150 45 7614 200719 3.65 208333 46 7036 202190 3.36 209226 47 7152 198069 3.49 205221 48 7072 191285 3.57 198357 49 6723 193931 3.35 200654 50 6716 189593 3.42 196309 51 6863 182695 3.62 189558 52 6298 172516 3.52 178814 53 6122 173230 3.41 179352 54 5991 166960 3.46 172951 55 5802 174248 3.22 180050 56 6014 168490 3.45 174504 57 5718 171724 3.22 177442 58 5378 165480 3.15 170858 59 5466 157513 3.35 162979 60 5118 162072 3.06 167190 61 5155 153963 3.24 159118 62 4855 153767 3.06 158622 63 4774 154726 2.99 159500 64 4682 149592 3.03 154274 65 4625 152361 2.95 156986 66 4829 144999 3.22 149828 67 4354 146523 2.89 150877 68 4516 151625 2.89 156141 69 4620 147024 3.05 151644 70 4403 142369 3.00 146772 71 4309 138758 3.01 143067 72 4399 138268 3.08 142667 73 4356 135017 3.13 139373 74 4205 136186 3.00 140391 75 4179 134844 3.01 139023 76 3892 130476 2.90 134368 77 4164 129472 3.12 133636 78 4265 130926 3.15 135191 79 4035 132691 2.95 136726 80 4057 127360 3.09 131417 81 4239 127392 3.22 131631 82 3957 125754 3.05 129711 83 3866 124324 3.02 128190 84 3983 124516 3.10 128499 85 3668 121389 2.93 125057 86 3701 120890 2.97 124591 87 3774 119291 3.07 123065 88 3519 115288 2.96 118807 89 3602 114422 3.05 118024 90 3648 115780 3.05 119428 91 3411 113441 2.92 116852 92 3235 113027 2.78 116262 93 3303 110977 2.89 114280 94 3219 109761 2.85 112980 95 3165 107282 2.87 110447 96 3202 106054 2.93 109256 97 2960 106188 2.71 109148 98 2782 101872 2.66 104654 99 2022 0 100.00 2022