Bismark Processing Report

/gscratch/scrubbed/strigg/Pgen_FQs/EPI-205_S26_L004_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/Pgen_FQs/EPI-205_S26_L004_R2_001_val_2.fq.gz

Data processed at 01:02 on 2019-08-07


Sequence pairs analysed in total 16541499
Paired-end alignments with a unique best hit 7025382
Pairs without alignments under any condition 8039389
Pairs that did not map uniquely 1476728
Genomic sequence context not extractable (edges of chromosomes) 20

Cytosine Methylation

Total C's analysed 203655615
Methylated C's in CpG context 7398519
Methylated C's in CHG context 1161571
Methylated C's in CHH context 4560293
Methylated C's in Unknown context 178365
Unmethylated C's in CpG context 22754525
Unmethylated C's in CHG context 43791734
Unmethylated C's in CHH context 123988973
Unmethylated C's in Unknown context 1416101
Percentage methylation (CpG context) 24.5%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 3.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3423867 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 3601495 original bottom strand